Wall clock time and date at job start Tue Mar 31 2020 22:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47315 * 2 1 4 4 N 1.46496 * 109.47343 * 239.99144 * 2 1 3 5 5 S 1.65598 * 119.99676 * 95.00206 * 4 2 1 6 6 O 1.42105 * 106.40472 * 311.46248 * 5 4 2 7 7 O 1.42104 * 106.40285 * 178.54052 * 5 4 2 8 8 C 1.76201 * 107.22017 * 65.00117 * 5 4 2 9 9 C 1.38661 * 119.87781 * 270.02242 * 8 5 4 10 10 C 1.38611 * 120.50174 * 179.97438 * 9 8 5 11 11 C 1.37633 * 120.25254 * 0.02562 * 10 9 8 12 12 C 1.40705 * 119.74106 * 359.74702 * 11 10 9 13 13 C 1.41396 * 120.24420 * 180.27933 * 12 11 10 14 14 H 1.08004 * 119.99746 * 204.51790 * 13 12 11 15 15 C 1.39947 * 119.99824 * 24.51337 * 13 12 11 16 16 N 1.30815 * 120.00517 * 17.73763 * 15 13 12 17 17 Si 1.86808 * 119.99688 * 197.74032 * 15 13 12 18 18 H 1.48504 * 109.47141 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47144 * 120.00274 * 17 15 13 20 20 H 1.48505 * 109.46677 * 240.00279 * 17 15 13 21 21 C 1.37600 * 119.87974 * 89.99510 * 8 5 4 22 22 C 1.53005 * 109.46893 * 119.99406 * 2 1 3 23 23 H 1.08991 * 109.52248 * 59.87280 * 22 2 1 24 24 C 1.53179 * 109.52230 * 299.68600 * 22 2 1 25 25 C 1.53170 * 109.03594 * 183.11242 * 24 22 2 26 26 C 1.53095 * 109.16451 * 56.98524 * 25 24 22 27 27 O 1.42902 * 109.40819 * 302.38816 * 26 25 24 28 28 C 1.42904 * 114.10112 * 61.16200 * 27 26 25 29 29 H 1.09001 * 109.46933 * 60.00306 * 1 2 3 30 30 H 1.08991 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47310 * 300.00801 * 1 2 3 32 32 H 0.96993 * 120.00439 * 275.00015 * 4 2 1 33 33 H 1.07999 * 119.74645 * 359.95384 * 9 8 5 34 34 H 1.08001 * 119.87439 * 180.02562 * 10 9 8 35 35 H 1.07995 * 120.13028 * 179.97438 * 11 10 9 36 36 H 0.96995 * 120.00754 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.11912 * 0.02562 * 21 8 5 38 38 H 1.09003 * 109.54687 * 302.98161 * 24 22 2 39 39 H 1.09006 * 109.54219 * 63.24493 * 24 22 2 40 40 H 1.09006 * 109.52667 * 297.07308 * 25 24 22 41 41 H 1.09005 * 109.57736 * 176.91891 * 25 24 22 42 42 H 1.09000 * 109.47817 * 182.40971 * 26 25 24 43 43 H 1.08995 * 109.48315 * 62.36927 * 26 25 24 44 44 H 1.08993 * 109.48322 * 178.85749 * 28 27 26 45 45 H 1.09005 * 109.49059 * 58.82553 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 16 2.4123 0.1769 -2.5504 6 8 1.3248 1.0591 -2.7922 7 8 2.8778 -0.7638 -3.5083 8 6 3.7929 1.1908 -2.1371 9 6 3.5871 2.4649 -1.6302 10 6 4.6637 3.2732 -1.3003 11 6 5.9510 2.8183 -1.4736 12 6 6.1719 1.5253 -1.9827 13 6 7.4900 1.0450 -2.1594 14 1 7.6891 0.2676 -2.8822 15 6 8.5365 1.5770 -1.3977 16 7 8.2754 2.2463 -0.3044 17 14 10.3065 1.3315 -1.9422 18 1 10.3324 0.5451 -3.2016 19 1 10.9422 2.6540 -2.1706 20 1 11.0520 0.5996 -0.8868 21 6 5.0713 0.7150 -2.3181 22 6 2.0400 -0.7212 1.2494 23 1 1.6753 -1.7482 1.2515 24 6 1.5365 0.0047 2.5008 25 6 2.1164 -0.6794 3.7424 26 6 3.6444 -0.6816 3.6475 27 8 4.0446 -1.3445 2.4464 28 6 3.5709 -0.7218 1.2506 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.1111 -1.6562 -1.1947 33 1 2.5802 2.8303 -1.4917 34 1 4.4917 4.2638 -0.9059 35 1 6.7884 3.4499 -1.2163 36 1 9.0008 2.6147 0.2237 37 1 5.2293 -0.2777 -2.7131 38 1 1.8595 1.0454 2.4735 39 1 0.4479 -0.0398 2.5349 40 1 1.7532 -1.7057 3.7961 41 1 1.8079 -0.1367 4.6361 42 1 4.0613 -1.2052 4.5079 43 1 4.0094 0.3453 3.6348 44 1 3.9348 -1.2742 0.3844 45 1 3.9349 0.3047 1.2063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619495621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:54 Heat of formation + Delta-G solvation = -142.432727 kcal Electronic energy + Delta-G solvation = -28707.635036 eV Core-core repulsion = 24815.009023 eV Total energy + Delta-G solvation = -3892.626012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60998 -39.44975 -38.32241 -37.56861 -36.89571 -35.67593 -34.22720 -31.92267 -31.90464 -31.59490 -30.07391 -27.35739 -26.03521 -24.75454 -23.67788 -22.86207 -22.43466 -21.26178 -20.50447 -19.59592 -18.51482 -17.73065 -17.53279 -17.05053 -16.96586 -16.75106 -16.53791 -16.02259 -15.80389 -15.23834 -15.13679 -15.08494 -14.41168 -14.33747 -14.22303 -14.10534 -13.72982 -13.39732 -13.33100 -13.23537 -13.17275 -13.07665 -13.04006 -12.80673 -12.64019 -12.58610 -12.36406 -12.22363 -12.03220 -11.85537 -11.60171 -11.50175 -11.32903 -11.21937 -11.15259 -10.60202 -10.23485 -9.85076 -9.55958 -8.74314 -6.45592 -0.48865 0.40365 0.83872 1.36111 1.42931 1.50750 2.12005 2.16638 2.54606 2.77729 2.94704 3.46052 3.53655 3.65170 3.81924 3.83753 4.04976 4.13416 4.29635 4.32823 4.38914 4.43983 4.46548 4.53935 4.59577 4.75058 4.84091 4.87211 4.90016 4.95167 4.99352 5.01130 5.05825 5.12148 5.17628 5.20081 5.31519 5.40549 5.45874 5.48017 5.56088 5.88424 5.93700 6.09631 6.12751 6.27786 6.52388 6.79383 6.84424 8.23539 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.004754 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.176660 B = 5888.240641 C = 7566.521201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 H 0.079 0.921 4 N -1.103 6.103 5 S 2.715 3.285 6 O -0.981 6.981 7 O -0.999 6.999 8 C -0.637 4.637 9 C -0.147 4.147 10 C -0.121 4.121 11 C -0.141 4.141 12 C 0.065 3.935 13 C -0.497 4.497 14 H 0.076 0.924 15 C 0.040 3.960 16 N -0.820 5.820 17 Si 0.979 3.021 18 H -0.260 1.260 19 H -0.261 1.261 20 H -0.265 1.265 21 C -0.143 4.143 22 C -0.113 4.113 23 H 0.099 0.901 24 C -0.119 4.119 25 C -0.145 4.145 26 C 0.045 3.955 27 O -0.404 6.404 28 C 0.064 3.936 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.426 0.574 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.291 0.709 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 -3.541 9.420 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.046 3.954 3 H 0.097 0.903 4 N -0.864 5.864 5 S 2.808 3.192 6 O -0.971 6.971 7 O -0.989 6.989 8 C -0.726 4.726 9 C -0.167 4.167 10 C -0.140 4.140 11 C -0.160 4.160 12 C 0.062 3.938 13 C -0.527 4.527 14 H 0.094 0.906 15 C -0.176 4.176 16 N -0.445 5.445 17 Si 0.800 3.200 18 H -0.184 1.184 19 H -0.186 1.186 20 H -0.189 1.189 21 C -0.164 4.164 22 C -0.133 4.133 23 H 0.117 0.883 24 C -0.157 4.157 25 C -0.183 4.183 26 C -0.031 4.031 27 O -0.324 6.324 28 C -0.013 4.013 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.263 0.737 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.007 -3.444 8.803 15.282 hybrid contribution 1.802 0.192 0.069 1.813 sum -10.205 -3.253 8.872 13.908 Atomic orbital electron populations 1.22349 0.92903 1.03843 1.03576 1.20926 0.95778 0.95691 0.83040 0.90299 1.55373 1.81742 1.19609 1.29698 1.00912 0.73109 0.72679 0.72505 1.93501 1.52395 1.66981 1.84202 1.93502 1.82720 1.62969 1.59695 1.30230 1.14604 1.10686 1.17033 1.20443 0.98764 0.93398 1.04143 1.21119 0.92742 0.99608 1.00527 1.21625 0.96355 0.95650 1.02406 1.18005 0.93330 0.91767 0.90689 1.19868 0.92463 1.20156 1.20170 0.90578 1.26685 1.05688 0.92375 0.92838 1.69804 1.36793 1.27205 1.10721 0.85196 0.75906 0.79403 0.79514 1.18410 1.18578 1.18940 1.20810 0.91498 0.98828 1.05261 1.22001 0.94752 1.01826 0.94732 0.88255 1.21757 1.02395 0.99126 0.92462 1.22135 0.94622 1.02470 0.99068 1.22833 0.95968 0.97185 0.87123 1.87903 1.75668 1.54029 1.14769 1.22582 0.94257 0.97268 0.87193 0.92443 0.90546 0.89036 0.73723 0.84990 0.85633 0.87051 0.89797 0.87526 0.91856 0.88209 0.90419 0.88706 0.87830 0.94112 0.89955 0.94976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.17 71.98 0.66 -2.41 16 2 C 0.15 3.52 2.36 45.00 0.11 3.62 16 3 H 0.08 2.03 7.22 -2.38 -0.02 2.01 16 4 N -1.10 -29.30 4.76 -169.38 -0.81 -30.10 16 5 S 2.72 97.47 5.65 -56.49 -0.32 97.15 16 6 O -0.98 -37.07 16.53 -128.00 -2.12 -39.19 16 7 O -1.00 -41.45 17.27 -128.00 -2.21 -43.66 16 8 C -0.64 -27.06 5.81 22.22 0.13 -26.93 16 9 C -0.15 -6.02 8.90 22.46 0.20 -5.82 16 10 C -0.12 -5.25 10.02 22.22 0.22 -5.03 16 11 C -0.14 -7.07 8.70 22.73 0.20 -6.87 16 12 C 0.07 3.46 5.57 -21.29 -0.12 3.34 16 13 C -0.50 -26.50 9.05 23.46 0.21 -26.29 16 14 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 15 C 0.04 1.96 5.14 85.26 0.44 2.40 16 16 N -0.82 -41.18 10.95 21.83 0.24 -40.94 16 17 Si 0.98 37.58 29.60 68.60 2.03 39.61 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 20 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 21 C -0.14 -6.97 9.26 22.73 0.21 -6.76 16 22 C -0.11 -2.40 2.08 -10.70 -0.02 -2.42 16 23 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 24 C -0.12 -2.01 4.87 30.71 0.15 -1.86 16 25 C -0.15 -2.34 6.14 30.68 0.19 -2.15 16 26 C 0.05 1.02 6.84 72.01 0.49 1.51 16 27 O -0.40 -12.30 10.76 -148.98 -1.60 -13.91 16 28 C 0.06 1.90 5.93 72.01 0.43 2.33 16 29 H 0.06 1.26 7.64 -2.39 -0.02 1.24 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.24 6.52 -2.39 -0.02 1.23 16 32 H 0.43 9.38 8.84 -96.76 -0.85 8.53 16 33 H 0.13 4.66 7.60 -2.91 -0.02 4.64 16 34 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 36 H 0.29 13.13 8.30 -92.71 -0.77 12.37 16 37 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.18 6.63 -2.38 -0.02 1.17 16 40 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 2.63 7.69 -2.39 -0.02 2.61 16 45 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -66.79 371.98 -1.14 -67.94 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.15 Total: 36.45 kcal Atomic # 6 Polarization: -76.84 SS G_CDS: 3.49 Total: -73.34 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -0.57 Total: -71.04 kcal Atomic # 8 Polarization: -90.82 SS G_CDS: -5.93 Total: -96.75 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 97.47 SS G_CDS: -0.32 Total: 97.15 kcal Total: -66.79 -1.14 -67.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.498 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds