Wall clock time and date at job start Tue Mar 31 2020 22:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47157 * 2 1 4 4 N 1.46500 * 109.46820 * 240.00203 * 2 1 3 5 5 S 1.65596 * 120.00118 * 95.00441 * 4 2 1 6 6 O 1.42096 * 106.40463 * 178.53740 * 5 4 2 7 7 O 1.42099 * 106.40009 * 311.45557 * 5 4 2 8 8 C 1.76195 * 107.22066 * 64.99489 * 5 4 2 9 9 C 1.38659 * 119.87652 * 90.00139 * 8 5 4 10 10 C 1.38614 * 120.50114 * 179.97438 * 9 8 5 11 11 C 1.37639 * 120.25012 * 0.02562 * 10 9 8 12 12 C 1.40695 * 119.74365 * 359.97438 * 11 10 9 13 13 C 1.41397 * 120.24432 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00050 * 155.23187 * 13 12 11 15 15 C 1.39945 * 119.99873 * 335.23834 * 13 12 11 16 16 N 1.30821 * 120.00052 * 342.28121 * 15 13 12 17 17 Si 1.86805 * 119.99885 * 162.28667 * 15 13 12 18 18 H 1.48495 * 109.47023 * 59.99437 * 17 15 13 19 19 H 1.48492 * 109.46936 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47101 * 299.99599 * 17 15 13 21 21 C 1.37600 * 119.87751 * 269.72881 * 8 5 4 22 22 C 1.52996 * 109.47244 * 120.00276 * 2 1 3 23 23 H 1.08998 * 109.57920 * 179.83931 * 22 2 1 24 24 C 1.53181 * 109.52083 * 300.00101 * 22 2 1 25 25 C 1.53182 * 109.03657 * 176.88501 * 24 22 2 26 26 C 1.53090 * 109.16426 * 303.01864 * 25 24 22 27 27 O 1.42910 * 109.41573 * 57.60690 * 26 25 24 28 28 C 1.42903 * 114.09792 * 298.84118 * 27 26 25 29 29 H 1.09000 * 109.47227 * 299.99977 * 1 2 3 30 30 H 1.08998 * 109.46870 * 59.99740 * 1 2 3 31 31 H 1.09001 * 109.46845 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99918 * 274.99392 * 4 2 1 33 33 H 1.08002 * 119.74745 * 359.95851 * 9 8 5 34 34 H 1.07998 * 119.87390 * 180.02562 * 10 9 8 35 35 H 1.07998 * 120.12705 * 179.97438 * 11 10 9 36 36 H 0.96997 * 119.99624 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.12436 * 359.97438 * 21 8 5 38 38 H 1.08999 * 109.54473 * 57.01888 * 24 22 2 39 39 H 1.08992 * 109.54104 * 296.75052 * 24 22 2 40 40 H 1.09001 * 109.52291 * 62.91965 * 25 24 22 41 41 H 1.08993 * 109.52513 * 183.11311 * 25 24 22 42 42 H 1.09000 * 109.48375 * 177.59141 * 26 25 24 43 43 H 1.08998 * 109.48284 * 297.62583 * 26 25 24 44 44 H 1.09000 * 109.48132 * 181.13567 * 28 27 26 45 45 H 1.08999 * 109.48403 * 301.16805 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4122 0.1772 -2.5505 6 8 2.8776 -0.7634 -3.5085 7 8 1.3247 1.0593 -2.7921 8 6 3.7927 1.1910 -2.1371 9 6 5.0810 0.7116 -2.3197 10 6 6.1764 1.4982 -1.9994 11 6 5.9958 2.7662 -1.4951 12 6 4.6932 3.2630 -1.3057 13 6 4.4955 4.5638 -0.7878 14 1 3.5815 5.0975 -1.0030 15 6 5.4841 5.1597 0.0033 16 7 6.4156 4.4227 0.5515 17 14 5.4735 7.0076 0.2769 18 1 4.2016 7.4035 0.9332 19 1 6.6169 7.3859 1.1454 20 1 5.5931 7.7022 -1.0302 21 6 3.5886 2.4575 -1.6397 22 6 2.0400 -0.7213 1.2492 23 1 3.1300 -0.7248 1.2495 24 6 1.5301 -0.0001 2.5007 25 6 1.9815 -0.7749 3.7426 26 6 1.4677 -2.2141 3.6514 27 8 1.9533 -2.8167 2.4501 28 6 1.5238 -2.1627 1.2543 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1110 -1.6561 -1.1949 33 1 5.2320 -0.2824 -2.7142 34 1 7.1753 1.1148 -2.1460 35 1 6.8507 3.3772 -1.2458 36 1 7.1006 4.8357 1.1001 37 1 2.5844 2.8308 -1.5028 38 1 0.4414 0.0470 2.4762 39 1 1.9395 1.0095 2.5320 40 1 3.0704 -0.7795 3.7932 41 1 1.5764 -0.2995 4.6358 42 1 1.8220 -2.7818 4.5118 43 1 0.3778 -2.2111 3.6416 44 1 1.9187 -2.6932 0.3879 45 1 0.4346 -2.1590 1.2131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:58 Heat of formation + Delta-G solvation = -120.237695 kcal Electronic energy + Delta-G solvation = -28375.415776 eV Core-core repulsion = 24483.752212 eV Total energy + Delta-G solvation = -3891.663563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.82821 -37.67050 -36.86124 -36.39857 -35.29873 -33.87273 -33.32828 -31.02634 -30.10347 -29.82519 -28.72349 -25.50944 -25.17184 -24.54061 -21.91524 -21.75953 -21.00909 -19.53524 -19.16747 -17.97766 -17.19620 -16.50470 -16.02380 -15.94412 -15.70752 -15.28605 -14.86666 -14.75415 -14.62954 -14.44557 -13.80871 -13.50881 -13.44462 -13.25626 -12.75827 -12.70522 -12.59438 -12.10453 -11.94290 -11.73161 -11.67513 -11.53616 -11.41739 -11.37830 -11.33750 -11.14155 -11.03305 -10.92451 -10.90105 -10.65503 -10.55387 -10.35847 -9.81655 -9.69853 -9.46286 -9.37294 -9.18706 -8.06565 -7.72860 -6.95522 -4.56636 1.02323 2.17202 2.61447 2.97402 2.99261 3.06384 3.53117 3.75423 3.80173 4.23249 4.41441 4.63093 4.70900 4.72120 4.83766 4.99083 5.01329 5.15003 5.28913 5.32929 5.36296 5.40543 5.43527 5.57472 5.63960 5.76108 5.86537 5.90626 5.97280 6.02768 6.06829 6.16176 6.21236 6.32339 6.43876 6.62095 6.73116 6.82568 7.00733 7.08680 7.16534 7.22169 7.35724 7.70661 7.77772 7.91406 8.37231 8.64224 8.68964 9.99944 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.004348 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.707535 B = 6438.618026 C = 7975.512731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.159 3.841 3 H 0.097 0.903 4 N -1.117 6.117 5 S 2.688 3.312 6 O -0.978 6.978 7 O -0.970 6.970 8 C -0.631 4.631 9 C -0.145 4.145 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.093 3.907 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.911 3.089 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.130 4.130 22 C -0.127 4.127 23 H 0.091 0.909 24 C -0.120 4.120 25 C -0.156 4.156 26 C 0.060 3.940 27 O -0.383 6.383 28 C 0.063 3.937 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.410 0.590 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.284 0.716 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 -8.316 6.516 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.052 3.948 3 H 0.115 0.885 4 N -0.875 5.875 5 S 2.783 3.217 6 O -0.968 6.968 7 O -0.960 6.960 8 C -0.723 4.723 9 C -0.166 4.166 10 C -0.140 4.140 11 C -0.136 4.136 12 C 0.090 3.910 13 C -0.491 4.491 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.151 4.151 22 C -0.148 4.148 23 H 0.109 0.891 24 C -0.158 4.158 25 C -0.193 4.193 26 C -0.017 4.017 27 O -0.301 6.301 28 C -0.014 4.014 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.838 -8.329 5.861 12.851 hybrid contribution 0.703 1.007 0.730 1.429 sum -7.134 -7.322 6.591 12.164 Atomic orbital electron populations 1.22467 0.95317 1.02401 1.03399 1.20678 0.94094 0.96678 0.83378 0.88543 1.55741 1.82510 1.18882 1.30320 1.01720 0.74380 0.73300 0.72259 1.93519 1.82542 1.62744 1.57998 1.93527 1.52749 1.66177 1.83533 1.29744 1.13889 1.10103 1.18589 1.20084 0.91152 0.99445 1.05930 1.20818 0.96804 0.95604 1.00816 1.21636 0.98096 0.95041 0.98873 1.17665 0.90930 0.92666 0.89782 1.19579 1.03225 0.99277 1.26980 0.89960 1.25920 0.94134 1.00647 0.93493 1.69769 1.11957 1.37623 1.22575 0.86316 0.78854 0.82024 0.79338 1.18821 1.20245 1.18665 1.20774 0.98576 0.92135 1.03602 1.22047 1.02548 0.95665 0.94494 0.89051 1.21709 1.01145 0.99836 0.93158 1.22183 1.02457 0.96142 0.98564 1.22577 0.97802 0.93636 0.87665 1.87935 1.74531 1.53794 1.13864 1.22711 0.98728 0.92400 0.87522 0.91295 0.90782 0.92204 0.75584 0.87613 0.88387 0.85806 0.90518 0.87077 0.91191 0.90513 0.90826 0.90870 0.89177 0.93381 0.89044 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.81 37.16 0.33 -1.71 16 2 C 0.16 2.11 2.61 -67.93 -0.18 1.93 16 3 H 0.10 1.45 7.24 -51.93 -0.38 1.08 16 4 N -1.12 -15.72 5.43 -4.89 -0.03 -15.75 16 5 S 2.69 49.36 5.65 -107.50 -0.61 48.76 16 6 O -0.98 -19.77 17.27 -57.17 -0.99 -20.76 16 7 O -0.97 -19.69 16.52 -57.17 -0.94 -20.63 16 8 C -0.63 -13.51 5.81 -39.66 -0.23 -13.74 16 9 C -0.14 -3.14 9.53 -39.29 -0.37 -3.51 16 10 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 11 C -0.12 -2.86 8.70 -38.87 -0.34 -3.20 16 12 C 0.09 2.34 5.57 -106.82 -0.60 1.75 16 13 C -0.46 -11.53 9.05 -37.74 -0.34 -11.88 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 15 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 16 N -0.79 -19.22 10.97 55.55 0.61 -18.61 16 17 Si 0.91 17.71 29.60 -169.99 -5.03 12.67 16 18 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 C -0.13 -3.01 8.65 -38.87 -0.34 -3.34 16 22 C -0.13 -1.53 2.41 -90.48 -0.22 -1.74 16 23 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 24 C -0.12 -1.29 5.04 -26.54 -0.13 -1.43 16 25 C -0.16 -1.52 6.14 -26.59 -0.16 -1.68 16 26 C 0.06 0.57 6.84 37.20 0.25 0.82 16 27 O -0.38 -4.60 10.77 -35.23 -0.38 -4.98 16 28 C 0.06 0.69 5.60 37.21 0.21 0.89 16 29 H 0.07 0.68 6.37 -51.93 -0.33 0.35 16 30 H 0.07 0.97 7.64 -51.93 -0.40 0.58 16 31 H 0.06 0.59 6.37 -51.93 -0.33 0.26 16 32 H 0.41 4.77 7.10 -34.46 -0.24 4.52 16 33 H 0.11 2.09 7.60 -52.49 -0.40 1.69 16 34 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.12 3.09 6.18 -52.49 -0.32 2.77 16 36 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 37 H 0.11 2.45 7.60 -52.49 -0.40 2.06 16 38 H 0.07 0.65 6.29 -51.93 -0.33 0.32 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.93 6.62 -51.93 -0.34 0.58 16 45 H 0.06 0.54 6.30 -51.93 -0.33 0.21 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -29.92 365.84 -10.76 -40.69 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.31 Total: 11.33 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: -2.60 Total: -38.23 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.58 Total: -34.36 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -2.31 Total: -46.38 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 49.36 SS G_CDS: -0.61 Total: 48.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.92 -10.76 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.552 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds