Wall clock time and date at job start Tue Mar 31 2020 22:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47208 * 2 1 4 4 N 1.46505 * 109.46952 * 119.99348 * 2 1 3 5 5 S 1.65592 * 120.00348 * 264.99807 * 4 2 1 6 6 O 1.42098 * 106.40557 * 311.46413 * 5 4 2 7 7 O 1.42099 * 106.40393 * 178.53585 * 5 4 2 8 8 C 1.76202 * 107.21685 * 64.99994 * 5 4 2 9 9 C 1.38665 * 119.87617 * 89.99865 * 8 5 4 10 10 C 1.38613 * 120.50227 * 180.02562 * 9 8 5 11 11 C 1.37639 * 120.24850 * 0.02562 * 10 9 8 12 12 C 1.40697 * 119.74251 * 359.97438 * 11 10 9 13 13 C 1.41400 * 120.24175 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00036 * 155.30402 * 13 12 11 15 15 C 1.39950 * 119.99831 * 335.29908 * 13 12 11 16 16 N 1.30821 * 120.00108 * 342.23508 * 15 13 12 17 17 Si 1.86799 * 119.99603 * 162.23126 * 15 13 12 18 18 H 1.48493 * 109.47255 * 94.66879 * 17 15 13 19 19 H 1.48507 * 109.46731 * 214.66853 * 17 15 13 20 20 H 1.48496 * 109.47440 * 334.66229 * 17 15 13 21 21 C 1.37597 * 119.88131 * 270.02130 * 8 5 4 22 22 C 1.52993 * 109.47282 * 239.99438 * 2 1 3 23 23 H 1.09003 * 109.52401 * 300.00817 * 22 2 1 24 24 C 1.53180 * 109.52200 * 60.12878 * 22 2 1 25 25 C 1.53176 * 109.03747 * 176.88802 * 24 22 2 26 26 C 1.53087 * 109.16251 * 303.01738 * 25 24 22 27 27 O 1.42910 * 109.41374 * 57.61381 * 26 25 24 28 28 C 1.42912 * 114.14648 * 298.86850 * 27 26 25 29 29 H 1.08993 * 109.47645 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47144 * 300.00591 * 1 2 3 31 31 H 1.08996 * 109.47031 * 60.00123 * 1 2 3 32 32 H 0.96998 * 119.99333 * 84.99904 * 4 2 1 33 33 H 1.07999 * 119.74938 * 359.74921 * 9 8 5 34 34 H 1.07999 * 119.87339 * 180.02562 * 10 9 8 35 35 H 1.07991 * 120.12810 * 179.97438 * 11 10 9 36 36 H 0.97002 * 119.99679 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.12129 * 0.02562 * 21 8 5 38 38 H 1.09002 * 109.54226 * 296.75273 * 24 22 2 39 39 H 1.08997 * 109.54541 * 56.93174 * 24 22 2 40 40 H 1.09003 * 109.52195 * 62.92535 * 25 24 22 41 41 H 1.09003 * 109.52189 * 183.11062 * 25 24 22 42 42 H 1.09007 * 109.48028 * 177.58872 * 26 25 24 43 43 H 1.09001 * 109.48196 * 297.62564 * 26 25 24 44 44 H 1.08995 * 109.43020 * 301.11000 * 28 27 26 45 45 H 1.09007 * 109.53014 * 181.07630 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 2.4122 0.1773 2.5505 6 8 3.2436 1.2444 2.1156 7 8 2.8122 -0.7696 3.5316 8 6 0.9275 0.9150 3.1473 9 6 0.1379 0.2353 4.0625 10 6 -1.0329 0.8032 4.5401 11 6 -1.4246 2.0503 4.1093 12 6 -0.6314 2.7492 3.1809 13 6 -1.0241 4.0308 2.7308 14 1 -0.2829 4.7239 2.3611 15 6 -2.3733 4.4010 2.7642 16 7 -3.3007 3.4846 2.8719 17 14 -2.8499 6.2039 2.6552 18 1 -3.1483 6.5525 1.2429 19 1 -4.0531 6.4492 3.4905 20 1 -1.7275 7.0433 3.1458 21 6 0.5555 2.1631 2.7033 22 6 2.0400 -0.7213 -1.2491 23 1 1.6770 -1.7491 -1.2499 24 6 1.5327 0.0016 -2.5007 25 6 2.1127 -0.6825 -3.7424 26 6 3.6407 -0.6806 -3.6497 27 8 4.0445 -1.3410 -2.4484 28 6 3.5709 -0.7193 -1.2519 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.1109 -1.6561 1.1950 33 1 0.4351 -0.7458 4.4023 34 1 -1.6399 0.2650 5.2530 35 1 -2.3374 2.4907 4.4824 36 1 -4.2358 3.7413 2.8954 37 1 1.1716 2.6904 1.9899 38 1 0.4442 -0.0459 -2.5331 39 1 1.8516 1.0435 -2.4744 40 1 1.7521 -1.7099 -3.7941 41 1 1.8012 -0.1409 -4.6356 42 1 4.0578 -1.2042 -4.5100 43 1 4.0030 0.3474 -3.6388 44 1 3.9332 0.3078 -1.2091 45 1 3.9367 -1.2704 -0.3854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:02 Heat of formation + Delta-G solvation = -122.980649 kcal Electronic energy + Delta-G solvation = -28288.169686 eV Core-core repulsion = 24396.387179 eV Total energy + Delta-G solvation = -3891.782507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.72554 -37.70433 -36.85077 -36.41147 -35.32159 -33.88046 -33.35263 -30.97595 -30.11570 -29.88911 -28.94161 -25.51361 -25.20600 -23.83440 -21.91513 -21.54314 -21.02290 -20.31144 -19.07008 -17.98731 -17.16797 -16.35462 -16.15498 -15.92277 -15.80004 -15.30061 -14.93235 -14.73290 -14.56069 -14.32960 -13.54883 -13.41098 -13.33160 -13.30543 -13.12756 -12.62295 -12.55095 -12.09190 -11.95345 -11.70178 -11.59893 -11.55036 -11.38706 -11.37836 -11.31560 -11.21866 -11.04478 -10.99399 -10.92515 -10.65166 -10.48717 -10.40027 -9.85028 -9.74043 -9.52545 -9.37687 -9.13612 -8.05362 -7.73235 -6.96303 -4.56914 1.01288 2.16493 2.60118 2.97720 2.99397 3.06116 3.53027 3.75985 3.79963 4.22286 4.40461 4.56371 4.65991 4.68453 4.77519 4.97347 5.03840 5.19095 5.31517 5.36164 5.40643 5.47927 5.51606 5.62248 5.66593 5.73228 5.81061 5.87851 5.99692 6.02310 6.09150 6.15416 6.16165 6.41461 6.61670 6.63038 6.72571 6.82001 7.00203 7.08757 7.16611 7.23281 7.35293 7.69989 7.77507 7.90836 8.36901 8.63790 8.68478 9.99046 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.003833 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.326954 B = 7303.945829 C = 8748.014268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.157 3.843 3 H 0.094 0.906 4 N -1.118 6.118 5 S 2.686 3.314 6 O -0.972 6.972 7 O -0.977 6.977 8 C -0.630 4.630 9 C -0.144 4.144 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.093 3.907 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.126 4.126 22 C -0.123 4.123 23 H 0.085 0.915 24 C -0.120 4.120 25 C -0.154 4.154 26 C 0.058 3.942 27 O -0.384 6.384 28 C 0.063 3.937 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.283 0.717 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -6.376 -10.314 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.050 3.950 3 H 0.112 0.888 4 N -0.875 5.875 5 S 2.782 3.218 6 O -0.962 6.962 7 O -0.967 6.967 8 C -0.722 4.722 9 C -0.166 4.166 10 C -0.141 4.141 11 C -0.137 4.137 12 C 0.090 3.910 13 C -0.490 4.490 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.148 4.148 22 C -0.143 4.143 23 H 0.103 0.897 24 C -0.158 4.158 25 C -0.192 4.192 26 C -0.019 4.019 27 O -0.303 6.303 28 C -0.014 4.014 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.246 0.754 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.304 -6.300 -9.966 12.928 hybrid contribution -1.476 0.742 -0.011 1.652 sum 3.828 -5.558 -9.977 12.045 Atomic orbital electron populations 1.22421 0.94399 1.02654 1.04139 1.20730 0.94705 0.96310 0.83224 0.88819 1.55691 1.84240 1.19400 1.28146 1.01710 0.74821 0.73116 0.72114 1.93528 1.65275 1.55714 1.81685 1.93523 1.82234 1.62620 1.58359 1.29718 1.21688 1.07444 1.13303 1.20069 0.96258 0.99243 1.00987 1.20809 0.96237 0.96634 1.00374 1.21634 1.00885 0.94486 0.96673 1.17654 0.90577 0.92849 0.89948 1.19609 0.92901 0.99009 1.37474 0.89955 1.25912 0.96335 0.99754 0.92165 1.69777 1.01998 1.35026 1.35086 0.86280 0.79026 0.82296 0.79128 1.19426 1.19951 1.18256 1.20741 0.99527 0.93134 1.01350 1.22042 0.96675 1.01031 0.94553 0.89699 1.21703 1.01421 0.99611 0.93107 1.22180 0.96569 1.01850 0.98597 1.22588 0.94102 0.97500 0.87734 1.87923 1.74505 1.53954 1.13908 1.22680 0.92760 0.98662 0.87285 0.92360 0.90020 0.91470 0.75408 0.87668 0.88439 0.85828 0.90606 0.87177 0.90508 0.91226 0.91117 0.90861 0.89196 0.93154 0.92510 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.17 37.16 0.34 -2.11 16 2 C 0.16 2.07 2.49 -67.93 -0.17 1.90 16 3 H 0.09 1.33 7.50 -51.93 -0.39 0.94 16 4 N -1.12 -15.50 4.76 -4.89 -0.02 -15.53 16 5 S 2.69 48.98 5.71 -107.50 -0.61 48.37 16 6 O -0.97 -19.74 16.60 -57.17 -0.95 -20.69 16 7 O -0.98 -19.65 17.27 -57.17 -0.99 -20.64 16 8 C -0.63 -13.21 5.06 -39.66 -0.20 -13.41 16 9 C -0.14 -3.06 9.53 -39.29 -0.37 -3.43 16 10 C -0.12 -2.65 10.02 -39.66 -0.40 -3.05 16 11 C -0.12 -2.82 8.70 -38.87 -0.34 -3.16 16 12 C 0.09 2.31 5.57 -106.83 -0.60 1.71 16 13 C -0.46 -11.40 9.05 -37.74 -0.34 -11.74 16 14 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 15 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 16 N -0.79 -18.98 10.97 55.55 0.61 -18.37 16 17 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 C -0.13 -2.87 8.31 -38.88 -0.32 -3.20 16 22 C -0.12 -1.35 2.08 -90.48 -0.19 -1.53 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.12 -1.17 4.86 -26.55 -0.13 -1.30 16 25 C -0.15 -1.31 6.14 -26.60 -0.16 -1.48 16 26 C 0.06 0.54 6.84 37.20 0.25 0.79 16 27 O -0.38 -4.64 10.76 -35.23 -0.38 -5.01 16 28 C 0.06 0.74 5.94 37.20 0.22 0.96 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.41 6.16 -51.93 -0.32 1.09 16 31 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 32 H 0.41 4.68 8.84 -34.47 -0.30 4.38 16 33 H 0.11 2.04 7.60 -52.49 -0.40 1.64 16 34 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.12 3.05 6.18 -52.49 -0.32 2.73 16 36 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 37 H 0.11 2.41 7.60 -52.48 -0.40 2.01 16 38 H 0.08 0.72 6.62 -51.93 -0.34 0.37 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 1.11 7.69 -51.92 -0.40 0.71 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -29.34 370.01 -10.86 -40.20 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.57 Total: 10.90 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: -2.49 Total: -37.35 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.59 Total: -33.90 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -2.32 Total: -46.34 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: 48.98 SS G_CDS: -0.61 Total: 48.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.34 -10.86 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.779 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds