Wall clock time and date at job start Tue Mar 31 2020 23:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00452 * 2 1 4 4 C 1.52999 * 109.47435 * 175.24289 * 3 2 1 5 5 C 1.53000 * 109.46942 * 179.09822 * 4 3 2 6 6 N 1.46497 * 112.85036 * 52.82567 * 5 4 3 7 7 S 1.65602 * 120.00414 * 58.86328 * 6 5 4 8 8 O 1.42098 * 106.40349 * 177.78652 * 7 6 5 9 9 O 1.42097 * 106.40402 * 310.71141 * 7 6 5 10 10 C 1.76199 * 107.21396 * 64.25010 * 7 6 5 11 11 C 1.38659 * 119.88010 * 83.99718 * 10 7 6 12 12 C 1.38609 * 120.50485 * 179.97438 * 11 10 7 13 13 C 1.37630 * 120.24809 * 359.97438 * 12 11 10 14 14 C 1.40699 * 119.74682 * 0.02562 * 13 12 11 15 15 C 1.41401 * 120.24703 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00088 * 147.94376 * 15 14 13 17 17 C 1.39947 * 119.99549 * 327.94732 * 15 14 13 18 18 N 1.30819 * 120.00124 * 349.33193 * 17 15 14 19 19 Si 1.86795 * 119.99748 * 169.33429 * 17 15 14 20 20 H 1.48494 * 109.47511 * 89.99827 * 19 17 15 21 21 H 1.48504 * 109.47408 * 210.00205 * 19 17 15 22 22 H 1.48504 * 109.47053 * 329.99743 * 19 17 15 23 23 C 1.37596 * 119.87521 * 263.72076 * 10 7 6 24 24 C 1.53778 * 113.61687 * 281.51304 * 5 4 3 25 25 C 1.53777 * 87.08461 * 220.02014 * 24 5 4 26 26 C 1.53783 * 87.08206 * 25.43334 * 25 24 5 27 27 H 1.09004 * 109.47255 * 184.78138 * 1 2 3 28 28 H 1.09008 * 109.46790 * 304.77760 * 1 2 3 29 29 H 1.08998 * 109.47209 * 64.77579 * 1 2 3 30 30 H 1.09003 * 109.46871 * 55.24062 * 3 2 1 31 31 H 1.09010 * 109.46928 * 295.24440 * 3 2 1 32 32 H 1.09001 * 109.47272 * 59.10332 * 4 3 2 33 33 H 1.08996 * 109.47103 * 299.09846 * 4 3 2 34 34 H 0.97003 * 119.99570 * 238.87159 * 6 5 4 35 35 H 1.08002 * 119.74303 * 0.02562 * 11 10 7 36 36 H 1.07998 * 119.87188 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.13138 * 180.02562 * 13 12 11 38 38 H 0.97008 * 119.99645 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.12758 * 0.02562 * 23 10 7 40 40 H 1.08998 * 113.61488 * 334.57176 * 24 5 4 41 41 H 1.09006 * 113.61520 * 105.47100 * 24 5 4 42 42 H 1.08995 * 113.61705 * 270.88637 * 25 24 5 43 43 H 1.08998 * 113.61807 * 139.97929 * 25 24 5 44 44 H 1.08994 * 113.61953 * 220.02176 * 26 25 24 45 45 H 1.08996 * 113.61808 * 89.11045 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5309 1.1866 0.1196 5 6 4.1549 2.5834 0.0970 6 7 3.5645 3.4863 1.0880 7 16 3.6114 3.0952 2.6965 8 8 3.0127 4.1806 3.3911 9 8 3.1462 1.7563 2.7976 10 6 5.3062 3.0706 3.1780 11 6 5.9405 4.2513 3.5334 12 6 7.2731 4.2469 3.9148 13 6 7.9817 3.0674 3.9450 14 6 7.3484 1.8632 3.5864 15 6 8.0662 0.6452 3.6141 16 1 7.5569 -0.2764 3.8542 17 6 9.4366 0.6342 3.3306 18 7 10.0116 1.7016 2.8393 19 14 10.4447 -0.9049 3.6536 20 1 10.4398 -1.7633 2.4419 21 1 11.8411 -0.5219 3.9832 22 1 9.8547 -1.6531 4.7926 23 6 5.9937 1.8791 3.2053 24 6 4.2531 3.1915 -1.3120 25 6 5.6341 3.7273 -0.8992 26 6 5.6927 2.5714 0.1135 27 1 -0.3634 -1.0241 0.0857 28 1 -0.3633 0.5862 0.8442 29 1 -0.3633 0.4379 -0.9296 30 1 1.6228 1.8756 0.8443 31 1 1.7577 1.8156 -0.9296 32 1 3.9167 0.6028 -0.7162 33 1 3.7840 0.6907 1.0567 34 1 3.1460 4.3133 0.8020 35 1 5.3917 5.1813 3.5138 36 1 7.7569 5.1724 4.1900 37 1 9.0198 3.0661 4.2428 38 1 10.9615 1.6937 2.6425 39 1 5.4967 0.9600 2.9320 40 1 4.2935 2.4470 -2.1071 41 1 3.5195 3.9752 -1.5015 42 1 5.5992 4.7129 -0.4351 43 1 6.3838 3.6557 -1.6872 44 1 6.1212 2.8544 1.0749 45 1 6.1265 1.6573 -0.2918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619504598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:44 Heat of formation + Delta-G solvation = -84.559819 kcal Electronic energy + Delta-G solvation = -28923.783092 eV Core-core repulsion = 25033.666637 eV Total energy + Delta-G solvation = -3890.116455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.70236 -37.72938 -37.48724 -36.64651 -35.32018 -33.79363 -32.68854 -30.93787 -30.07910 -29.88791 -26.64371 -25.64582 -25.43080 -24.27755 -21.89985 -21.50672 -21.01359 -19.71687 -18.75291 -17.83382 -17.14317 -16.40106 -15.90859 -15.86137 -15.63664 -15.25388 -14.99164 -14.71978 -14.66590 -14.46790 -13.60508 -13.46718 -13.38963 -13.20723 -12.61389 -12.50914 -12.30634 -11.94468 -11.81186 -11.64727 -11.60470 -11.48027 -11.40273 -11.32098 -11.10277 -11.00602 -10.94785 -10.84689 -10.69657 -10.62024 -10.45164 -9.85837 -9.74564 -9.61708 -9.47877 -9.37344 -9.07059 -8.00784 -7.63937 -6.86448 -4.54754 1.00944 2.15843 2.62296 3.02193 3.04233 3.08352 3.49126 3.83726 3.86373 4.21410 4.45056 4.56100 4.74258 4.94181 5.04475 5.08395 5.23189 5.27769 5.32186 5.39589 5.42518 5.53380 5.65464 5.73669 5.74774 5.90510 5.92555 6.01304 6.07579 6.12174 6.17679 6.38281 6.47311 6.61002 6.64443 6.69533 6.72890 6.82440 7.05790 7.18048 7.24608 7.30686 7.34941 7.67603 7.82470 7.92193 8.40301 8.67661 8.72962 10.10300 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.004318 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.098245 B = 6482.296335 C = 7074.290464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.074 3.926 4 C -0.130 4.130 5 C 0.160 3.840 6 N -1.101 6.101 7 S 2.685 3.315 8 O -0.979 6.979 9 O -0.961 6.961 10 C -0.634 4.634 11 C -0.139 4.139 12 C -0.124 4.124 13 C -0.106 4.106 14 C 0.095 3.905 15 C -0.464 4.464 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.805 5.805 19 Si 0.911 3.089 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.114 4.114 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.161 4.161 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.413 0.587 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.281 0.719 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 2.355 -8.545 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.002 4.002 4 C -0.169 4.169 5 C 0.070 3.930 6 N -0.857 5.857 7 S 2.781 3.219 8 O -0.970 6.970 9 O -0.951 6.951 10 C -0.726 4.726 11 C -0.160 4.160 12 C -0.144 4.144 13 C -0.126 4.126 14 C 0.091 3.909 15 C -0.495 4.495 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.431 5.431 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.135 4.135 24 C -0.170 4.170 25 C -0.173 4.173 26 C -0.199 4.199 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.246 0.754 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.121 0.879 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.141 1.931 -8.049 12.332 hybrid contribution 0.998 0.169 -0.163 1.025 sum -8.143 2.100 -8.212 11.754 Atomic orbital electron populations 1.22698 0.81725 1.02443 0.99589 1.87871 1.19114 1.28411 1.95319 1.22385 0.94248 0.84296 0.99292 1.22031 0.93415 0.95743 1.05698 1.21011 0.93735 0.88492 0.89718 1.55356 1.73339 1.32555 1.24459 1.01811 0.75167 0.73311 0.71640 1.93526 1.76825 1.55654 1.70976 1.93549 1.79864 1.36553 1.85167 1.29711 1.22798 1.00667 1.19433 1.20060 0.95283 0.94630 1.06024 1.20806 0.94126 0.97512 1.01915 1.21606 0.99985 0.92095 0.98893 1.17665 0.90681 0.93576 0.88935 1.19562 0.93036 0.94631 1.42225 0.90037 1.25853 0.98174 0.97776 0.92343 1.69737 1.12773 1.29248 1.31321 0.86258 0.78736 0.81538 0.79943 1.19389 1.20166 1.18451 1.20881 0.96024 0.94371 1.02273 1.23223 0.98161 1.00436 0.95204 1.22757 0.96501 0.98941 0.99127 1.23679 0.93794 0.99541 1.02900 0.89922 0.94115 0.94600 0.93342 0.94087 0.90005 0.87881 0.75360 0.87885 0.88406 0.86081 0.90768 0.86708 0.88962 0.91251 0.90121 0.91423 0.87871 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.88 10.70 -35.23 -0.38 -6.26 16 3 C 0.07 1.05 5.47 37.16 0.20 1.25 16 4 C -0.13 -1.91 4.36 -26.73 -0.12 -2.03 16 5 C 0.16 2.18 0.85 -131.01 -0.11 2.07 16 6 N -1.10 -15.52 4.82 1.19 0.01 -15.51 16 7 S 2.68 49.15 5.67 -107.50 -0.61 48.54 16 8 O -0.98 -19.82 17.43 -57.17 -1.00 -20.82 16 9 O -0.96 -19.29 13.24 -57.17 -0.76 -20.05 16 10 C -0.63 -13.20 3.98 -39.66 -0.16 -13.36 16 11 C -0.14 -2.90 9.53 -39.29 -0.37 -3.27 16 12 C -0.12 -2.68 10.02 -39.67 -0.40 -3.08 16 13 C -0.11 -2.54 8.64 -38.88 -0.34 -2.87 16 14 C 0.09 2.34 5.51 -106.82 -0.59 1.75 16 15 C -0.46 -11.57 9.05 -37.74 -0.34 -11.92 16 16 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 17 C 0.08 1.78 5.23 -17.34 -0.09 1.69 16 18 N -0.80 -19.46 11.07 55.55 0.61 -18.85 16 19 Si 0.91 17.96 29.57 -169.99 -5.03 12.94 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.11 -2.59 7.74 -38.87 -0.30 -2.89 16 24 C -0.13 -1.42 7.24 -25.92 -0.19 -1.60 16 25 C -0.14 -1.69 7.99 -25.92 -0.21 -1.90 16 26 C -0.16 -2.46 7.02 -25.91 -0.18 -2.64 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.45 8.12 -51.92 -0.42 0.02 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.72 6.71 -51.93 -0.35 0.37 16 31 H 0.04 0.48 8.07 -51.92 -0.42 0.06 16 32 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 33 H 0.10 1.80 6.28 -51.93 -0.33 1.47 16 34 H 0.41 4.66 8.77 -34.47 -0.30 4.36 16 35 H 0.10 1.95 7.75 -52.49 -0.41 1.55 16 36 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.12 2.98 6.48 -52.49 -0.34 2.64 16 38 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 39 H 0.11 2.55 7.48 -52.49 -0.39 2.16 16 40 H 0.09 0.89 8.02 -51.93 -0.42 0.47 16 41 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.91 4.46 -51.93 -0.23 1.68 16 45 H 0.09 1.41 8.10 -51.93 -0.42 0.99 16 LS Contribution 370.61 15.07 5.58 5.58 Total: -1.00 -29.36 370.61 -10.16 -39.51 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.52 Total: 12.23 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -2.08 Total: -37.33 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.62 Total: -34.36 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -2.13 Total: -47.12 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.61 Total: 48.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.36 -10.16 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619504598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.045 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds