Wall clock time and date at job start Tue Mar 31 2020 23:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00452 * 2 1 4 4 C 1.52999 * 109.47435 * 175.24289 * 3 2 1 5 5 C 1.53000 * 109.46942 * 179.09822 * 4 3 2 6 6 N 1.46497 * 112.85036 * 52.82567 * 5 4 3 7 7 S 1.65602 * 120.00414 * 58.86328 * 6 5 4 8 8 O 1.42098 * 106.40349 * 177.78652 * 7 6 5 9 9 O 1.42097 * 106.40402 * 310.71141 * 7 6 5 10 10 C 1.76199 * 107.21396 * 64.25010 * 7 6 5 11 11 C 1.38659 * 119.88010 * 83.99718 * 10 7 6 12 12 C 1.38609 * 120.50485 * 179.97438 * 11 10 7 13 13 C 1.37630 * 120.24809 * 359.97438 * 12 11 10 14 14 C 1.40699 * 119.74682 * 0.02562 * 13 12 11 15 15 C 1.41401 * 120.24703 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00088 * 147.94376 * 15 14 13 17 17 C 1.39947 * 119.99549 * 327.94732 * 15 14 13 18 18 N 1.30819 * 120.00124 * 349.33193 * 17 15 14 19 19 Si 1.86795 * 119.99748 * 169.33429 * 17 15 14 20 20 H 1.48494 * 109.47511 * 89.99827 * 19 17 15 21 21 H 1.48504 * 109.47408 * 210.00205 * 19 17 15 22 22 H 1.48504 * 109.47053 * 329.99743 * 19 17 15 23 23 C 1.37596 * 119.87521 * 263.72076 * 10 7 6 24 24 C 1.53778 * 113.61687 * 281.51304 * 5 4 3 25 25 C 1.53777 * 87.08461 * 220.02014 * 24 5 4 26 26 C 1.53783 * 87.08206 * 25.43334 * 25 24 5 27 27 H 1.09004 * 109.47255 * 184.78138 * 1 2 3 28 28 H 1.09008 * 109.46790 * 304.77760 * 1 2 3 29 29 H 1.08998 * 109.47209 * 64.77579 * 1 2 3 30 30 H 1.09003 * 109.46871 * 55.24062 * 3 2 1 31 31 H 1.09010 * 109.46928 * 295.24440 * 3 2 1 32 32 H 1.09001 * 109.47272 * 59.10332 * 4 3 2 33 33 H 1.08996 * 109.47103 * 299.09846 * 4 3 2 34 34 H 0.97003 * 119.99570 * 238.87159 * 6 5 4 35 35 H 1.08002 * 119.74303 * 0.02562 * 11 10 7 36 36 H 1.07998 * 119.87188 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.13138 * 180.02562 * 13 12 11 38 38 H 0.97008 * 119.99645 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.12758 * 0.02562 * 23 10 7 40 40 H 1.08998 * 113.61488 * 334.57176 * 24 5 4 41 41 H 1.09006 * 113.61520 * 105.47100 * 24 5 4 42 42 H 1.08995 * 113.61705 * 270.88637 * 25 24 5 43 43 H 1.08998 * 113.61807 * 139.97929 * 25 24 5 44 44 H 1.08994 * 113.61953 * 220.02176 * 26 25 24 45 45 H 1.08996 * 113.61808 * 89.11045 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5309 1.1866 0.1196 5 6 4.1549 2.5834 0.0970 6 7 3.5645 3.4863 1.0880 7 16 3.6114 3.0952 2.6965 8 8 3.0127 4.1806 3.3911 9 8 3.1462 1.7563 2.7976 10 6 5.3062 3.0706 3.1780 11 6 5.9405 4.2513 3.5334 12 6 7.2731 4.2469 3.9148 13 6 7.9817 3.0674 3.9450 14 6 7.3484 1.8632 3.5864 15 6 8.0662 0.6452 3.6141 16 1 7.5569 -0.2764 3.8542 17 6 9.4366 0.6342 3.3306 18 7 10.0116 1.7016 2.8393 19 14 10.4447 -0.9049 3.6536 20 1 10.4398 -1.7633 2.4419 21 1 11.8411 -0.5219 3.9832 22 1 9.8547 -1.6531 4.7926 23 6 5.9937 1.8791 3.2053 24 6 4.2531 3.1915 -1.3120 25 6 5.6341 3.7273 -0.8992 26 6 5.6927 2.5714 0.1135 27 1 -0.3634 -1.0241 0.0857 28 1 -0.3633 0.5862 0.8442 29 1 -0.3633 0.4379 -0.9296 30 1 1.6228 1.8756 0.8443 31 1 1.7577 1.8156 -0.9296 32 1 3.9167 0.6028 -0.7162 33 1 3.7840 0.6907 1.0567 34 1 3.1460 4.3133 0.8020 35 1 5.3917 5.1813 3.5138 36 1 7.7569 5.1724 4.1900 37 1 9.0198 3.0661 4.2428 38 1 10.9615 1.6937 2.6425 39 1 5.4967 0.9600 2.9320 40 1 4.2935 2.4470 -2.1071 41 1 3.5195 3.9752 -1.5015 42 1 5.5992 4.7129 -0.4351 43 1 6.3838 3.6557 -1.6872 44 1 6.1212 2.8544 1.0749 45 1 6.1265 1.6573 -0.2918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619504598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:43 Heat of formation + Delta-G solvation = -103.541534 kcal Electronic energy + Delta-G solvation = -28924.606201 eV Core-core repulsion = 25033.666637 eV Total energy + Delta-G solvation = -3890.939564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81239 -39.45542 -38.55760 -38.21221 -36.90229 -35.58796 -33.85689 -32.08314 -31.86753 -31.63443 -27.57778 -27.30105 -26.64105 -25.31286 -23.63242 -22.79181 -22.60257 -20.95232 -20.23511 -19.39899 -18.57331 -17.75932 -17.37771 -17.05949 -16.83378 -16.78424 -16.45269 -16.24743 -15.77297 -15.68101 -15.20442 -15.07653 -14.66717 -14.34681 -14.28994 -13.75521 -13.64731 -13.36396 -13.24598 -13.09902 -13.00620 -12.99678 -12.95009 -12.75302 -12.66525 -12.51313 -12.26406 -12.15791 -11.95340 -11.73489 -11.62276 -11.51672 -11.25964 -11.13999 -10.96572 -10.50998 -10.32042 -9.73925 -9.44783 -8.64888 -6.43384 -0.49083 0.41867 0.86898 1.38831 1.44629 1.51293 2.07890 2.20440 2.59824 2.77310 2.86695 3.42637 3.50699 3.57925 3.70234 4.00796 4.04598 4.08651 4.27691 4.32386 4.36429 4.42742 4.55543 4.57213 4.65485 4.79680 4.85385 4.86032 4.90258 4.91551 4.94296 5.06264 5.10309 5.15512 5.23798 5.28243 5.31794 5.39821 5.43446 5.57430 5.60999 5.88378 5.98526 6.12014 6.19111 6.32348 6.55710 6.84478 6.88724 8.33665 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.004318 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.098245 B = 6482.296335 C = 7074.290464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.418 6.418 3 C 0.073 3.927 4 C -0.132 4.132 5 C 0.158 3.842 6 N -1.081 6.081 7 S 2.710 3.290 8 O -0.994 6.994 9 O -0.979 6.979 10 C -0.637 4.637 11 C -0.138 4.138 12 C -0.126 4.126 13 C -0.127 4.127 14 C 0.069 3.931 15 C -0.502 4.502 16 H 0.074 0.926 17 C 0.041 3.959 18 N -0.830 5.830 19 Si 0.977 3.023 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.263 1.263 23 C -0.121 4.121 24 C -0.108 4.108 25 C -0.132 4.132 26 C -0.178 4.178 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.430 0.570 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.288 0.712 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 3.355 -10.533 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.337 6.337 3 C -0.003 4.003 4 C -0.171 4.171 5 C 0.069 3.931 6 N -0.843 5.843 7 S 2.803 3.197 8 O -0.984 6.984 9 O -0.969 6.969 10 C -0.727 4.727 11 C -0.159 4.159 12 C -0.145 4.145 13 C -0.147 4.147 14 C 0.066 3.934 15 C -0.532 4.532 16 H 0.092 0.908 17 C -0.174 4.174 18 N -0.457 5.457 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.217 4.217 27 H 0.113 0.887 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.268 0.732 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.297 2.959 -10.023 14.671 hybrid contribution 1.252 -0.093 0.423 1.325 sum -9.045 2.866 -9.600 13.497 Atomic orbital electron populations 1.22923 0.79905 1.03622 1.00747 1.87827 1.21244 1.29107 1.95546 1.22430 0.93366 0.84193 1.00348 1.22026 0.94554 0.96190 1.04373 1.21104 0.92253 0.88288 0.91458 1.54921 1.73033 1.33544 1.22762 1.01058 0.73587 0.72573 0.72478 1.93500 1.76539 1.55998 1.72388 1.93539 1.79589 1.37795 1.85984 1.30148 1.24382 0.99920 1.18202 1.20423 0.95172 0.95578 1.04683 1.21104 0.94549 0.97759 1.01052 1.21568 0.99689 0.92950 1.00454 1.17949 0.91716 0.94064 0.89647 1.19754 0.94384 0.94633 1.44417 0.90822 1.26565 0.98543 1.00702 0.91555 1.69782 1.13352 1.30857 1.31708 0.85271 0.77397 0.77845 0.79675 1.18779 1.19028 1.18700 1.20822 0.95643 0.95027 1.02721 1.23187 0.97350 1.01088 0.93086 1.22765 0.98114 0.97704 0.98333 1.23718 0.95026 1.00783 1.02161 0.88681 0.94263 0.92285 0.94512 0.90913 0.88699 0.91502 0.73208 0.85383 0.85701 0.87463 0.90107 0.87442 0.87036 0.88411 0.89966 0.90473 0.91386 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 11.01 113.37 1.25 1.75 16 2 O -0.42 -12.13 10.70 -148.98 -1.59 -13.72 16 3 C 0.07 1.92 5.47 71.98 0.39 2.31 16 4 C -0.13 -3.78 4.36 30.59 0.13 -3.65 16 5 C 0.16 4.05 0.85 4.13 0.00 4.05 16 6 N -1.08 -28.46 4.82 -150.13 -0.72 -29.19 16 7 S 2.71 97.88 5.67 -56.49 -0.32 97.56 16 8 O -0.99 -38.84 17.43 -128.00 -2.23 -41.07 16 9 O -0.98 -39.83 13.24 -128.00 -1.69 -41.53 16 10 C -0.64 -26.88 3.98 22.22 0.09 -26.79 16 11 C -0.14 -5.69 9.53 22.46 0.21 -5.47 16 12 C -0.13 -5.44 10.02 22.21 0.22 -5.22 16 13 C -0.13 -6.30 8.64 22.73 0.20 -6.11 16 14 C 0.07 3.59 5.51 -21.29 -0.12 3.48 16 15 C -0.50 -26.37 9.05 23.46 0.21 -26.16 16 16 H 0.07 3.82 7.87 -2.91 -0.02 3.79 16 17 C 0.04 1.98 5.23 85.26 0.45 2.43 16 18 N -0.83 -41.41 11.07 21.83 0.24 -41.17 16 19 Si 0.98 37.62 29.57 68.60 2.03 39.64 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 C -0.12 -5.76 7.74 22.73 0.18 -5.59 16 24 C -0.11 -1.91 7.24 31.12 0.23 -1.69 16 25 C -0.13 -2.97 7.99 31.12 0.25 -2.72 16 26 C -0.18 -5.41 7.02 31.12 0.22 -5.19 16 27 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.04 0.81 8.12 -2.38 -0.02 0.79 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 1.03 6.71 -2.39 -0.02 1.02 16 31 H 0.07 1.43 8.07 -2.38 -0.02 1.41 16 32 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 33 H 0.07 2.41 6.28 -2.39 -0.02 2.39 16 34 H 0.43 8.34 8.77 -96.74 -0.85 7.50 16 35 H 0.13 4.60 7.75 -2.91 -0.02 4.58 16 36 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.11 5.53 6.48 -2.91 -0.02 5.51 16 38 H 0.29 13.06 8.30 -92.70 -0.77 12.29 16 39 H 0.11 5.13 7.48 -2.91 -0.02 5.11 16 40 H 0.11 1.64 8.02 -2.39 -0.02 1.62 16 41 H 0.10 1.26 8.10 -2.38 -0.02 1.24 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 2.57 4.46 -2.39 -0.01 2.56 16 45 H 0.09 2.69 8.10 -2.39 -0.02 2.67 16 Total: -1.00 -65.92 370.61 -0.22 -66.14 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.16 Total: 37.89 kcal Atomic # 6 Polarization: -78.48 SS G_CDS: 3.91 Total: -74.56 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -0.48 Total: -70.36 kcal Atomic # 8 Polarization: -90.79 SS G_CDS: -5.52 Total: -96.31 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: 97.88 SS G_CDS: -0.32 Total: 97.56 kcal Total: -65.92 -0.22 -66.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619504598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.399 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds