Wall clock time and date at job start Tue Mar 31 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47032 * 2 1 4 4 O 1.42898 * 109.46819 * 240.00212 * 2 1 3 5 5 C 1.53000 * 109.47261 * 120.00207 * 2 1 3 6 6 H 1.08998 * 109.58388 * 62.23919 * 5 2 1 7 7 C 1.53195 * 109.58309 * 301.81407 * 5 2 1 8 8 C 1.53046 * 109.30897 * 185.58002 * 7 5 2 9 9 C 1.53034 * 109.54243 * 61.36209 * 8 7 5 10 10 C 1.53188 * 109.31496 * 298.63742 * 9 8 7 11 11 N 1.46925 * 109.58489 * 182.52404 * 5 2 1 12 12 S 1.65596 * 120.63255 * 353.41680 * 11 5 2 13 13 O 1.42094 * 106.39997 * 30.84467 * 12 11 5 14 14 O 1.42097 * 106.39994 * 163.76550 * 12 11 5 15 15 C 1.76202 * 107.21452 * 277.30339 * 12 11 5 16 16 C 1.37638 * 120.12408 * 118.30944 * 15 12 11 17 17 C 1.38619 * 120.24726 * 179.72102 * 16 15 12 18 18 C 1.38654 * 120.49690 * 0.55002 * 17 16 15 19 19 C 1.37601 * 120.25446 * 359.72292 * 18 17 16 20 20 C 1.40697 * 120.13018 * 298.57148 * 15 12 11 21 21 C 1.41395 * 120.24209 * 359.97438 * 20 15 12 22 22 H 1.08001 * 119.99817 * 327.34926 * 21 20 15 23 23 C 1.39939 * 120.00149 * 147.35436 * 21 20 15 24 24 N 1.30830 * 120.00130 * 349.62426 * 23 21 20 25 25 Si 1.86805 * 120.00351 * 169.62712 * 23 21 20 26 26 H 1.48497 * 109.47010 * 89.99607 * 25 23 21 27 27 H 1.48499 * 109.46923 * 209.99926 * 25 23 21 28 28 H 1.48504 * 109.46600 * 329.99605 * 25 23 21 29 29 H 1.09002 * 109.47019 * 306.59347 * 1 2 3 30 30 H 1.09002 * 109.47207 * 66.59123 * 1 2 3 31 31 H 1.09006 * 109.47220 * 186.59810 * 1 2 3 32 32 H 0.96701 * 113.99819 * 305.82147 * 4 2 1 33 33 H 1.08996 * 109.49959 * 305.52351 * 7 5 2 34 34 H 1.08992 * 109.50034 * 65.63055 * 7 5 2 35 35 H 1.09003 * 109.46120 * 301.33754 * 8 7 5 36 36 H 1.09004 * 109.44759 * 181.38012 * 8 7 5 37 37 H 1.08996 * 109.50227 * 178.68375 * 9 8 7 38 38 H 1.09004 * 109.49827 * 58.58512 * 9 8 7 39 39 H 1.08996 * 109.58928 * 294.84766 * 10 9 8 40 40 H 1.08998 * 109.71087 * 174.48742 * 10 9 8 41 41 H 1.08002 * 119.87896 * 359.96823 * 16 15 12 42 42 H 1.07997 * 119.75154 * 180.25209 * 17 16 15 43 43 H 1.08005 * 119.87388 * 179.75007 * 18 17 16 44 44 H 1.07993 * 120.13305 * 180.02562 * 19 18 17 45 45 H 0.97000 * 120.00208 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7109 -1.7602 1.2312 7 6 1.4938 -0.0280 2.5014 8 6 2.1169 -0.6657 3.7453 9 6 3.6351 -0.4764 3.7118 10 6 4.2055 -1.1747 2.4733 11 7 3.5080 -0.6702 1.2826 12 16 4.3602 -0.0551 0.0028 13 8 3.5356 0.9406 -0.5868 14 8 5.6719 0.2061 0.4827 15 6 4.5138 -1.3438 -1.1890 16 6 3.9671 -1.1936 -2.4432 17 6 4.0914 -2.2034 -3.3846 18 6 4.7566 -3.3791 -3.0718 19 6 5.3061 -3.5534 -1.8224 20 6 5.1910 -2.5325 -0.8605 21 6 5.7523 -2.7000 0.4264 22 1 6.1432 -1.8464 0.9603 23 6 5.8015 -3.9718 1.0083 24 7 5.1529 -4.9673 0.4606 25 14 6.7931 -4.2481 2.5671 26 1 5.9293 -4.0118 3.7517 27 1 7.2967 -5.6449 2.5923 28 1 7.9417 -3.3072 2.5963 29 1 -0.3633 0.6126 0.8251 30 1 -0.3634 0.4083 -0.9431 31 1 -0.3634 -1.0209 0.1181 32 1 1.6499 -1.5655 -1.2790 33 1 1.7471 1.0316 2.4703 34 1 0.4106 -0.1428 2.5376 35 1 1.8840 -1.7304 3.7630 36 1 1.7113 -0.1906 4.6386 37 1 4.0758 -0.9102 4.6093 38 1 3.8682 0.5875 3.6692 39 1 4.0529 -2.2506 2.5576 40 1 5.2713 -0.9623 2.3898 41 1 3.4427 -0.2840 -2.6961 42 1 3.6629 -2.0754 -4.3676 43 1 4.8440 -4.1610 -3.8117 44 1 5.8241 -4.4697 -1.5809 45 1 5.1867 -5.8487 0.8641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:46 Heat of formation + Delta-G solvation = -93.481192 kcal Electronic energy + Delta-G solvation = -30786.452335 eV Core-core repulsion = 26895.949021 eV Total energy + Delta-G solvation = -3890.503314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.00270 -37.46717 -36.91377 -35.41534 -34.72013 -33.78136 -32.00276 -31.86665 -30.06332 -29.42134 -28.73400 -25.44000 -24.17928 -23.52795 -21.53214 -21.17792 -20.87879 -20.11354 -18.12985 -17.55300 -16.96758 -16.02502 -15.74751 -15.55702 -15.21565 -14.84139 -14.25636 -14.02994 -13.97251 -13.94529 -13.33005 -13.21312 -13.12756 -12.97699 -12.71610 -12.61911 -12.03346 -11.95350 -11.81711 -11.41980 -11.23632 -11.21090 -11.15356 -11.01583 -10.95756 -10.81983 -10.73717 -10.65580 -10.47674 -10.45858 -10.07697 -9.70844 -9.52880 -9.37367 -9.26791 -9.02236 -8.24252 -7.78956 -7.39335 -6.95055 -4.67308 1.70516 2.49398 2.81040 2.97704 3.04950 3.14787 3.80654 3.90762 4.47668 4.77137 4.80547 4.94724 5.07887 5.20603 5.25716 5.42024 5.45058 5.50119 5.59228 5.71969 5.77094 5.82685 5.92571 5.97313 6.00610 6.16026 6.19213 6.22295 6.28558 6.29848 6.38717 6.46034 6.53979 6.66902 6.73056 6.85551 6.94172 7.10852 7.19298 7.40672 7.48892 7.69004 7.82490 7.94302 8.07000 8.20926 8.44347 8.62903 8.78092 9.99759 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.008139 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.905686 B = 3439.423465 C = 4957.600555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 H 0.152 0.848 4 O -0.532 6.532 5 C 0.133 3.867 6 H 0.069 0.931 7 C -0.125 4.125 8 C -0.115 4.115 9 C -0.137 4.137 10 C 0.126 3.874 11 N -0.982 5.982 12 S 2.713 3.287 13 O -0.982 6.982 14 O -0.991 6.991 15 C -0.745 4.745 16 C 0.031 3.969 17 C -0.260 4.260 18 C -0.076 4.076 19 C -0.164 4.164 20 C 0.191 3.809 21 C -0.483 4.483 22 H 0.106 0.894 23 C 0.085 3.915 24 N -0.787 5.787 25 Si 0.896 3.104 26 H -0.262 1.262 27 H -0.275 1.275 28 H -0.253 1.253 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.364 0.636 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 3.365 5.359 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.003 4.003 3 H 0.169 0.831 4 O -0.338 6.338 5 C 0.026 3.974 6 H 0.087 0.913 7 C -0.164 4.164 8 C -0.152 4.152 9 C -0.176 4.176 10 C 0.001 3.999 11 N -0.817 5.817 12 S 2.814 3.186 13 O -0.973 6.973 14 O -0.982 6.982 15 C -0.840 4.840 16 C 0.011 3.989 17 C -0.280 4.280 18 C -0.095 4.095 19 C -0.184 4.184 20 C 0.187 3.813 21 C -0.512 4.512 22 H 0.123 0.877 23 C -0.135 4.135 24 N -0.411 5.411 25 Si 0.719 3.281 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.176 1.176 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.211 0.789 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.134 0.866 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.084 4.542 5.292 9.941 hybrid contribution -0.148 -1.930 0.506 2.001 sum -7.232 2.611 5.798 9.630 Atomic orbital electron populations 1.22522 0.96838 1.01876 1.02508 1.23127 0.92711 1.00793 0.83624 0.83135 1.87118 1.70566 1.32060 1.44009 1.21632 0.80301 0.99753 0.95749 0.91302 1.21906 0.99589 1.00345 0.94565 1.21452 0.95713 1.00900 0.97182 1.21974 0.95836 1.01283 0.98522 1.21482 0.97047 0.98433 0.82942 1.57444 1.13226 1.79943 1.31114 1.00701 0.71596 0.73975 0.72279 1.93380 1.67231 1.58646 1.78048 1.93441 1.38571 1.85245 1.80901 1.29880 1.21589 1.19656 1.12922 1.20239 0.90659 0.96886 0.91099 1.20538 1.11552 0.96766 0.99138 1.20875 0.96675 0.95812 0.96152 1.21361 1.04042 1.00711 0.92254 1.17054 0.83924 0.88503 0.91832 1.20272 1.34506 0.95434 1.00975 0.87654 1.25863 0.93316 0.95219 0.99100 1.69795 1.31503 1.02009 1.37797 0.86484 0.81407 0.78908 0.81312 1.18673 1.19945 1.17647 0.91873 0.91670 0.92888 0.78879 0.91490 0.91191 0.91940 0.92374 0.91381 0.91872 0.91192 0.88623 0.86409 0.89156 0.89341 0.86632 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.89 37.16 0.33 -1.79 16 2 C 0.06 0.89 2.30 -26.73 -0.06 0.83 16 3 H 0.15 2.63 5.60 -52.78 -0.30 2.33 16 4 O -0.53 -9.31 5.93 -59.33 -0.35 -9.66 16 5 C 0.13 2.05 2.76 -67.60 -0.19 1.86 16 6 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 7 C -0.12 -1.57 4.80 -26.61 -0.13 -1.70 16 8 C -0.11 -1.41 5.88 -26.69 -0.16 -1.57 16 9 C -0.14 -1.93 6.08 -26.62 -0.16 -2.09 16 10 C 0.13 2.26 4.73 -3.71 -0.02 2.24 16 11 N -0.98 -18.18 3.17 -106.47 -0.34 -18.52 16 12 S 2.71 59.55 4.47 -107.50 -0.48 59.07 16 13 O -0.98 -21.42 11.54 -67.00 -0.77 -22.20 16 14 O -0.99 -24.48 14.59 -57.17 -0.83 -25.32 16 15 C -0.75 -17.56 5.10 -38.87 -0.20 -17.76 16 16 C 0.03 0.69 7.21 -39.66 -0.29 0.40 16 17 C -0.26 -5.64 10.05 -39.29 -0.39 -6.03 16 18 C -0.08 -1.72 10.02 -39.66 -0.40 -2.11 16 19 C -0.16 -4.06 8.64 -38.87 -0.34 -4.39 16 20 C 0.19 4.82 5.50 -106.82 -0.59 4.23 16 21 C -0.48 -11.90 6.38 -37.74 -0.24 -12.14 16 22 H 0.11 2.63 4.11 -52.49 -0.22 2.42 16 23 C 0.08 1.96 5.24 -17.34 -0.09 1.87 16 24 N -0.79 -18.59 11.10 55.55 0.62 -17.98 16 25 Si 0.90 17.53 29.57 -169.99 -5.03 12.51 16 26 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 27 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 28 H -0.25 -5.05 7.11 56.52 0.40 -4.65 16 29 H 0.06 0.64 6.92 -51.93 -0.36 0.28 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.36 5.71 8.91 45.56 0.41 6.12 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.73 6.89 -51.93 -0.36 0.37 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 40 H 0.10 1.86 5.45 -51.93 -0.28 1.58 16 41 H 0.12 2.54 6.40 -52.49 -0.34 2.20 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.12 2.92 6.52 -52.49 -0.34 2.58 16 45 H 0.28 6.12 8.30 -40.82 -0.34 5.79 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -28.35 343.54 -10.48 -38.83 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -5.56 Total: 16.23 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: -2.91 Total: -38.16 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.28 Total: -36.49 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -1.96 Total: -57.17 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: 59.55 SS G_CDS: -0.48 Total: 59.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.35 -10.48 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.646 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds