Wall clock time and date at job start Tue Mar 31 2020 22:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47441 * 2 1 4 4 O 1.42898 * 109.47270 * 120.00964 * 2 1 3 5 5 C 1.53002 * 109.46536 * 240.00740 * 2 1 3 6 6 H 1.09001 * 109.70450 * 44.15312 * 5 2 1 7 7 C 1.53201 * 109.58812 * 283.79624 * 5 2 1 8 8 C 1.53032 * 109.31453 * 185.57904 * 7 5 2 9 9 C 1.53045 * 109.53915 * 61.36521 * 8 7 5 10 10 C 1.53190 * 109.31205 * 298.63835 * 9 8 7 11 11 N 1.46920 * 108.77839 * 54.62976 * 10 9 8 12 12 S 1.65604 * 120.62880 * 126.41426 * 11 10 9 13 13 O 1.42099 * 106.39961 * 220.23729 * 12 11 10 14 14 O 1.42102 * 106.40214 * 353.15843 * 12 11 10 15 15 C 1.76203 * 107.21953 * 106.69743 * 12 11 10 16 16 C 1.37637 * 120.12714 * 116.46785 * 15 12 11 17 17 C 1.38619 * 120.24663 * 179.72205 * 16 15 12 18 18 C 1.38658 * 120.49489 * 0.55940 * 17 16 15 19 19 C 1.37591 * 120.25460 * 359.72282 * 18 17 16 20 20 C 1.40694 * 120.12435 * 296.74870 * 15 12 11 21 21 C 1.41400 * 120.24767 * 359.97438 * 20 15 12 22 22 H 1.08000 * 119.99535 * 326.76628 * 21 20 15 23 23 C 1.39942 * 119.99938 * 146.76982 * 21 20 15 24 24 N 1.30823 * 119.99922 * 165.45665 * 23 21 20 25 25 Si 1.86797 * 120.00144 * 345.44927 * 23 21 20 26 26 H 1.48502 * 109.47138 * 88.65058 * 25 23 21 27 27 H 1.48503 * 109.47091 * 208.64477 * 25 23 21 28 28 H 1.48494 * 109.47354 * 328.65016 * 25 23 21 29 29 H 1.08997 * 109.47441 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46657 * 299.99719 * 1 2 3 31 31 H 1.08996 * 109.47052 * 59.98883 * 1 2 3 32 32 H 0.96700 * 114.00036 * 59.99408 * 4 2 1 33 33 H 1.09004 * 109.49352 * 65.62599 * 7 5 2 34 34 H 1.09000 * 109.49415 * 305.53471 * 7 5 2 35 35 H 1.08998 * 109.46385 * 181.38701 * 8 7 5 36 36 H 1.09002 * 109.46267 * 301.36066 * 8 7 5 37 37 H 1.08996 * 109.49575 * 58.58592 * 9 8 7 38 38 H 1.08997 * 109.49475 * 178.64857 * 9 8 7 39 39 H 1.09002 * 109.58324 * 174.42416 * 10 9 8 40 40 H 1.09006 * 109.58295 * 294.70172 * 10 9 8 41 41 H 1.08003 * 119.87571 * 359.97438 * 16 15 12 42 42 H 1.07993 * 119.75064 * 180.26064 * 17 16 15 43 43 H 1.08004 * 119.87130 * 179.74280 * 18 17 16 44 44 H 1.08002 * 120.13101 * 180.02562 * 19 18 17 45 45 H 0.97004 * 120.00087 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.0399 -0.7211 -1.2494 6 1 1.4682 -0.3979 -2.1193 7 6 1.8865 -2.2345 -1.0675 8 6 2.5240 -2.9546 -2.2578 9 6 4.0172 -2.6240 -2.3162 10 6 4.1947 -1.1151 -2.5122 11 7 3.4617 -0.4109 -1.4514 12 16 4.2236 0.7117 -0.5017 13 8 3.7409 0.5130 0.8199 14 8 5.6020 0.6563 -0.8424 15 6 3.6494 2.2988 -1.0077 16 6 2.9400 3.0885 -0.1316 17 6 2.4921 4.3399 -0.5252 18 6 2.7426 4.8058 -1.8069 19 6 3.4448 4.0312 -2.7012 20 6 3.9094 2.7614 -2.3108 21 6 4.6326 1.9567 -3.2212 22 1 5.4131 1.3025 -2.8616 23 6 4.3370 2.0080 -4.5881 24 7 5.1706 1.4969 -5.4572 25 14 2.7521 2.8060 -5.1716 26 1 2.9799 4.2570 -5.3906 27 1 2.3198 2.1753 -6.4447 28 1 1.6967 2.6203 -4.1437 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.7210 -1.5954 1.2327 33 1 0.8280 -2.4889 -1.0127 34 1 2.3832 -2.5425 -0.1474 35 1 2.3946 -4.0308 -2.1430 36 1 2.0436 -2.6274 -3.1799 37 1 4.4938 -2.9284 -1.3844 38 1 4.4752 -3.1562 -3.1499 39 1 5.2533 -0.8614 -2.4555 40 1 3.8010 -0.8244 -3.4862 41 1 2.7350 2.7334 0.8676 42 1 1.9398 4.9545 0.1701 43 1 2.3853 5.7807 -2.1042 44 1 3.6392 4.3963 -3.6989 45 1 4.9659 1.5328 -6.4047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:49 Heat of formation + Delta-G solvation = -117.952365 kcal Electronic energy + Delta-G solvation = -30656.419566 eV Core-core repulsion = 26764.855102 eV Total energy + Delta-G solvation = -3891.564464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.40871 -39.59503 -38.31209 -36.99180 -36.51831 -35.63111 -33.40516 -32.71239 -32.44304 -31.82983 -30.22374 -27.20921 -25.41681 -25.00876 -23.72377 -22.95873 -22.19907 -21.34892 -19.65738 -19.47487 -18.65832 -17.99882 -17.18396 -17.11768 -16.88682 -16.29257 -15.93089 -15.77213 -15.51028 -15.25399 -15.11348 -15.01442 -14.64382 -14.52319 -14.37202 -13.99394 -13.69864 -13.54599 -13.20442 -13.03703 -12.92509 -12.76866 -12.72211 -12.67157 -12.50614 -12.38125 -12.25342 -12.04072 -11.98308 -11.73739 -11.64003 -11.45103 -11.23062 -11.12562 -10.93500 -10.59189 -9.98309 -9.67185 -9.58302 -8.97389 -6.72407 -0.13839 0.33920 0.74944 1.22300 1.33084 1.42483 2.04309 2.25579 2.49362 3.01366 3.30398 3.43157 3.74720 3.81975 3.87625 4.03349 4.16760 4.20056 4.20701 4.29716 4.32526 4.43881 4.53659 4.57936 4.62405 4.70003 4.83688 4.87478 4.91403 4.95101 4.99783 5.10821 5.15760 5.21041 5.23295 5.27570 5.31252 5.36639 5.43491 5.53131 5.54561 5.69666 5.81418 5.95287 6.08349 6.29573 6.53331 6.69438 7.12887 8.06779 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.007451 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.944668 B = 3756.790069 C = 4677.748915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.068 3.932 3 H 0.079 0.921 4 O -0.528 6.528 5 C 0.121 3.879 6 H 0.077 0.923 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.130 4.130 10 C 0.128 3.872 11 N -0.979 5.979 12 S 2.700 3.300 13 O -0.956 6.956 14 O -1.018 7.018 15 C -0.786 4.786 16 C 0.001 3.999 17 C -0.245 4.245 18 C -0.041 4.041 19 C -0.261 4.261 20 C 0.149 3.851 21 C -0.484 4.484 22 H 0.092 0.908 23 C 0.065 3.935 24 N -0.815 5.815 25 Si 0.951 3.049 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.251 1.251 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.364 0.636 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.127 0.873 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.109 0.891 45 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 -6.759 2.964 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 H 0.097 0.903 4 O -0.334 6.334 5 C 0.015 3.985 6 H 0.095 0.905 7 C -0.167 4.167 8 C -0.146 4.146 9 C -0.169 4.169 10 C 0.003 3.997 11 N -0.817 5.817 12 S 2.797 3.203 13 O -0.947 6.947 14 O -1.009 7.009 15 C -0.878 4.878 16 C -0.019 4.019 17 C -0.265 4.265 18 C -0.060 4.060 19 C -0.280 4.280 20 C 0.145 3.855 21 C -0.512 4.512 22 H 0.110 0.890 23 C -0.154 4.154 24 N -0.439 5.439 25 Si 0.774 3.226 26 H -0.182 1.182 27 H -0.197 1.197 28 H -0.174 1.174 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.212 0.788 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.127 0.873 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.233 -6.487 3.473 13.428 hybrid contribution -0.280 0.713 -1.266 1.480 sum -11.513 -5.774 2.207 13.067 Atomic orbital electron populations 1.22395 0.93002 1.04358 1.03192 1.22395 0.95599 0.96749 0.84515 0.90294 1.87145 1.76218 1.28080 1.41951 1.21962 0.80090 0.97987 0.98503 0.90473 1.21999 1.02889 0.91998 0.99798 1.21433 0.93838 1.01049 0.98315 1.21928 0.98674 0.93718 1.02561 1.21328 0.95776 0.92761 0.89841 1.57349 1.19723 1.54443 1.50159 1.01228 0.72296 0.73669 0.73128 1.93658 1.80568 1.85373 1.35062 1.93413 1.34744 1.87717 1.85028 1.30463 1.26279 1.24664 1.06369 1.20709 0.90536 0.93733 0.96894 1.21016 1.10029 0.97881 0.97584 1.21298 0.92902 0.98452 0.93320 1.21503 1.09389 0.96282 1.00863 1.17302 0.86517 0.91326 0.90363 1.20106 1.16725 1.22311 0.92057 0.88993 1.26696 1.00059 0.92876 0.95806 1.69684 1.35101 1.34408 1.04675 0.85739 0.79306 0.79267 0.78273 1.18189 1.19674 1.17409 0.89274 0.91312 0.91307 0.78772 0.87673 0.90617 0.89227 0.91752 0.91985 0.89761 0.91920 0.92501 0.85534 0.84335 0.84401 0.87290 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 9.38 71.98 0.68 -3.05 16 2 C 0.07 2.06 2.51 30.60 0.08 2.14 16 3 H 0.08 2.90 3.34 -2.40 -0.01 2.89 16 4 O -0.53 -16.78 10.00 -124.95 -1.25 -18.03 16 5 C 0.12 3.60 2.79 44.98 0.13 3.73 16 6 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 7 C -0.13 -2.72 4.63 30.67 0.14 -2.58 16 8 C -0.11 -2.30 5.88 30.62 0.18 -2.12 16 9 C -0.13 -3.57 6.08 30.67 0.19 -3.38 16 10 C 0.13 4.85 5.16 86.36 0.45 5.30 16 11 N -0.98 -37.43 3.12 -490.77 -1.53 -38.97 16 12 S 2.70 124.25 4.47 -56.49 -0.25 124.00 16 13 O -0.96 -43.31 11.57 -118.22 -1.37 -44.67 16 14 O -1.02 -55.08 14.17 -128.00 -1.81 -56.89 16 15 C -0.79 -37.07 5.34 22.73 0.12 -36.94 16 16 C 0.00 0.03 8.10 22.22 0.18 0.21 16 17 C -0.25 -9.22 10.05 22.46 0.23 -9.00 16 18 C -0.04 -1.60 10.02 22.22 0.22 -1.38 16 19 C -0.26 -11.89 7.24 22.73 0.16 -11.72 16 20 C 0.15 7.49 5.05 -21.29 -0.11 7.38 16 21 C -0.48 -25.74 7.65 23.46 0.18 -25.56 16 22 H 0.09 5.44 4.91 -2.91 -0.01 5.43 16 23 C 0.07 3.22 5.44 85.26 0.46 3.68 16 24 N -0.82 -40.97 13.93 21.83 0.30 -40.66 16 25 Si 0.95 39.01 24.57 68.60 1.69 40.70 16 26 H -0.26 -10.08 6.46 99.48 0.64 -9.43 16 27 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 28 H -0.25 -10.40 7.04 99.48 0.70 -9.70 16 29 H 0.09 1.37 7.18 -2.39 -0.02 1.35 16 30 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.36 8.15 6.95 -74.06 -0.51 7.64 16 33 H 0.10 1.51 7.27 -2.39 -0.02 1.50 16 34 H 0.08 1.61 6.41 -2.39 -0.02 1.60 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.06 2.78 6.14 -2.39 -0.01 2.77 16 40 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.13 4.95 6.98 -2.91 -0.02 4.93 16 42 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.11 4.86 4.75 -2.91 -0.01 4.85 16 45 H 0.30 13.38 8.30 -92.71 -0.77 12.61 16 Total: -1.00 -68.29 341.14 -0.50 -68.79 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: 0.44 Total: 39.04 kcal Atomic # 6 Polarization: -76.58 SS G_CDS: 3.28 Total: -73.30 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.23 Total: -79.63 kcal Atomic # 8 Polarization: -115.17 SS G_CDS: -4.43 Total: -119.60 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.69 Total: 40.70 kcal Atomic # 16 Polarization: 124.25 SS G_CDS: -0.25 Total: 124.00 kcal Total: -68.29 -0.50 -68.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.163 kcal (2) G-P(sol) polarization free energy of solvation -68.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds