Wall clock time and date at job start Tue Mar 31 2020 22:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46984 * 2 1 4 4 O 1.42901 * 109.47193 * 119.99807 * 2 1 3 5 5 C 1.53006 * 109.47213 * 239.99773 * 2 1 3 6 6 H 1.09000 * 109.58511 * 286.02598 * 5 2 1 7 7 C 1.53191 * 109.58378 * 46.45792 * 5 2 1 8 8 C 1.53038 * 109.30909 * 174.42322 * 7 5 2 9 9 C 1.53039 * 109.53703 * 298.63042 * 8 7 5 10 10 C 1.53189 * 109.31309 * 61.37034 * 9 8 7 11 11 N 1.46924 * 109.58516 * 165.74207 * 5 2 1 12 12 S 1.65605 * 120.63121 * 6.62977 * 11 5 2 13 13 O 1.42102 * 106.39971 * 45.39380 * 12 11 5 14 14 O 1.42098 * 106.39880 * 178.31012 * 12 11 5 15 15 C 1.76201 * 107.21871 * 291.85111 * 12 11 5 16 16 C 1.37630 * 120.12608 * 113.86022 * 15 12 11 17 17 C 1.38617 * 120.24588 * 179.70091 * 16 15 12 18 18 C 1.38652 * 120.49933 * 0.59795 * 17 16 15 19 19 C 1.37591 * 120.25226 * 359.68760 * 18 17 16 20 20 C 1.40700 * 120.12588 * 294.13773 * 15 12 11 21 21 C 1.41397 * 120.24424 * 0.02562 * 20 15 12 22 22 H 1.08005 * 119.99796 * 337.94358 * 21 20 15 23 23 C 1.39945 * 120.00005 * 157.95051 * 21 20 15 24 24 N 1.30824 * 119.99796 * 342.66452 * 23 21 20 25 25 Si 1.86802 * 120.00075 * 162.66344 * 23 21 20 26 26 H 1.48495 * 109.46698 * 60.00004 * 25 23 21 27 27 H 1.48501 * 109.46819 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46912 * 300.00007 * 25 23 21 29 29 H 1.08997 * 109.47200 * 293.38450 * 1 2 3 30 30 H 1.09000 * 109.47249 * 53.39175 * 1 2 3 31 31 H 1.09006 * 109.47300 * 173.38482 * 1 2 3 32 32 H 0.96695 * 114.00378 * 300.00382 * 4 2 1 33 33 H 1.09006 * 109.49544 * 294.37320 * 7 5 2 34 34 H 1.08998 * 109.50161 * 54.46470 * 7 5 2 35 35 H 1.09002 * 109.45732 * 178.61324 * 8 7 5 36 36 H 1.08996 * 109.46663 * 58.65534 * 8 7 5 37 37 H 1.09004 * 109.49667 * 301.41382 * 9 8 7 38 38 H 1.09001 * 109.49358 * 181.32210 * 9 8 7 39 39 H 1.08995 * 109.58789 * 185.58016 * 10 9 8 40 40 H 1.08994 * 109.70633 * 65.21604 * 10 9 8 41 41 H 1.08008 * 119.87975 * 359.97438 * 16 15 12 42 42 H 1.08005 * 119.74783 * 180.30387 * 17 16 15 43 43 H 1.08003 * 119.87405 * 179.70191 * 18 17 16 44 44 H 1.07995 * 120.13004 * 179.97438 * 19 18 17 45 45 H 0.96998 * 119.99930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 1 1.8945 -1.7956 -1.1359 7 6 1.2738 -0.2231 -2.4787 8 6 1.8810 -0.8434 -3.7390 9 6 3.3420 -0.4075 -3.8712 10 6 4.1317 -0.9078 -2.6576 11 7 3.4690 -0.4346 -1.4345 12 16 4.3169 0.4052 -0.2864 13 8 3.9552 -0.1544 0.9687 14 8 5.6588 0.4739 -0.7490 15 6 3.7041 2.0572 -0.2899 16 6 3.0319 2.5469 0.8067 17 6 2.5541 3.8482 0.8090 18 6 2.7362 4.6666 -0.2953 19 6 3.4002 4.1963 -1.4048 20 6 3.8951 2.8788 -1.4160 21 6 4.5786 2.3844 -2.5507 22 1 5.2522 1.5458 -2.4525 23 6 4.3825 2.9816 -3.8011 24 7 3.3443 3.7518 -4.0024 25 14 5.6031 2.6792 -5.1824 26 1 5.6595 1.2262 -5.4837 27 1 5.1714 3.4194 -6.3952 28 1 6.9482 3.1511 -4.7664 29 1 -0.3633 0.4079 0.9432 30 1 -0.3634 0.6128 -0.8249 31 1 -0.3634 -1.0209 -0.1184 32 1 1.7210 -0.2702 1.9979 33 1 0.2267 -0.5150 -2.3976 34 1 1.3456 0.8630 -2.5367 35 1 1.3220 -0.5099 -4.6134 36 1 1.8311 -1.9300 -3.6693 37 1 3.3944 0.6803 -3.9162 38 1 3.7669 -0.8306 -4.7814 39 1 5.1484 -0.5169 -2.6968 40 1 4.1587 -1.9974 -2.6604 41 1 2.8798 1.9165 1.6703 42 1 2.0320 4.2258 1.6757 43 1 2.3556 5.6773 -0.2844 44 1 3.5405 4.8353 -2.2640 45 1 3.2082 4.1654 -4.8692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:54 Heat of formation + Delta-G solvation = -94.594333 kcal Electronic energy + Delta-G solvation = -31085.066504 eV Core-core repulsion = 27194.514920 eV Total energy + Delta-G solvation = -3890.551584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -38.87448 -37.56884 -36.75633 -35.40719 -34.60716 -33.99241 -31.93992 -31.81376 -30.25902 -29.61786 -28.53398 -25.56821 -24.21087 -23.51919 -21.65546 -21.22301 -20.62294 -19.82661 -17.91697 -17.76828 -16.93076 -16.42449 -15.88023 -15.50557 -15.27542 -14.46067 -14.26268 -14.05071 -13.82761 -13.73511 -13.42298 -13.22512 -13.17049 -12.91659 -12.79614 -12.30167 -12.12344 -11.93951 -11.61419 -11.38244 -11.33757 -11.25241 -11.15898 -11.05457 -10.97300 -10.77026 -10.63574 -10.57755 -10.33763 -10.29299 -9.96253 -9.92319 -9.72101 -9.41445 -9.13761 -9.02866 -8.22609 -7.89693 -7.63518 -7.12788 -4.77982 1.66853 2.35282 2.69105 2.91501 2.95784 3.09845 3.70829 3.91859 4.32084 4.59960 4.86085 5.00188 5.25991 5.36261 5.43025 5.46625 5.48128 5.61924 5.69324 5.75501 5.88281 5.92576 6.00775 6.07841 6.10856 6.13433 6.20941 6.24371 6.30121 6.36004 6.39126 6.46520 6.52007 6.70372 6.73719 6.84460 6.96965 7.00876 7.07574 7.31262 7.39411 7.51682 7.68631 7.80932 7.93165 8.30679 8.33956 8.47754 8.65350 9.77576 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.007773 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.531475 B = 3601.527533 C = 4407.834311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.033 3.967 3 H 0.093 0.907 4 O -0.517 6.517 5 C 0.182 3.818 6 H 0.071 0.929 7 C -0.129 4.129 8 C -0.108 4.108 9 C -0.147 4.147 10 C 0.127 3.873 11 N -0.987 5.987 12 S 2.690 3.310 13 O -0.952 6.952 14 O -0.986 6.986 15 C -0.783 4.783 16 C -0.003 4.003 17 C -0.254 4.254 18 C -0.079 4.079 19 C -0.162 4.162 20 C 0.186 3.814 21 C -0.455 4.455 22 H 0.111 0.889 23 C 0.083 3.917 24 N -0.769 5.769 25 Si 0.900 3.100 26 H -0.252 1.252 27 H -0.275 1.275 28 H -0.257 1.257 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.365 0.635 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.127 0.873 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 -4.947 -1.079 7.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 H 0.110 0.890 4 O -0.321 6.321 5 C 0.076 3.924 6 H 0.089 0.911 7 C -0.168 4.168 8 C -0.145 4.145 9 C -0.186 4.186 10 C 0.001 3.999 11 N -0.822 5.822 12 S 2.788 3.212 13 O -0.942 6.942 14 O -0.977 6.977 15 C -0.877 4.877 16 C -0.023 4.023 17 C -0.275 4.275 18 C -0.098 4.098 19 C -0.182 4.182 20 C 0.181 3.819 21 C -0.483 4.483 22 H 0.129 0.871 23 C -0.139 4.139 24 N -0.391 5.391 25 Si 0.723 3.277 26 H -0.176 1.176 27 H -0.200 1.200 28 H -0.181 1.181 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.211 0.789 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.145 0.855 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.507 -5.606 -1.201 7.293 hybrid contribution -0.471 1.150 -0.608 1.384 sum -4.978 -4.456 -1.810 6.922 Atomic orbital electron populations 1.22409 0.96074 1.02136 1.02438 1.22769 0.94061 0.98792 0.87025 0.88999 1.86893 1.75379 1.55722 1.14087 1.20619 0.80225 0.99005 0.92595 0.91084 1.21970 0.98140 1.02577 0.94089 1.21371 0.96442 0.99463 0.97258 1.22091 0.94956 1.04541 0.96980 1.21288 0.97137 0.97713 0.83737 1.57682 1.18390 1.71220 1.34932 1.01578 0.72792 0.74044 0.72786 1.93618 1.82838 1.77402 1.40387 1.93428 1.34722 1.87833 1.81695 1.29930 1.29196 1.22771 1.05833 1.20144 0.92423 0.94919 0.94784 1.20452 1.11858 0.95943 0.99226 1.20866 0.97543 0.97442 0.93946 1.21623 1.02450 0.96359 0.97781 1.16971 0.85612 0.90194 0.89094 1.20445 1.21331 1.14981 0.91518 0.87105 1.26003 0.94649 0.92686 1.00559 1.69808 1.22823 1.21478 1.25017 0.86462 0.81754 0.80703 0.78824 1.17623 1.20003 1.18104 0.92377 0.91404 0.92286 0.78905 0.91596 0.90102 0.92387 0.92784 0.88514 0.92169 0.88782 0.92710 0.87632 0.88994 0.89087 0.85500 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 8.52 37.16 0.32 -2.03 16 2 C 0.03 0.57 2.56 -26.73 -0.07 0.50 16 3 H 0.09 1.76 2.99 -51.93 -0.16 1.61 16 4 O -0.52 -9.22 9.28 -60.82 -0.56 -9.78 16 5 C 0.18 3.11 2.84 -67.60 -0.19 2.92 16 6 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 7 C -0.13 -2.00 4.39 -26.61 -0.12 -2.12 16 8 C -0.11 -1.56 5.88 -26.69 -0.16 -1.72 16 9 C -0.15 -2.43 6.08 -26.61 -0.16 -2.59 16 10 C 0.13 2.24 5.82 -3.71 -0.02 2.22 16 11 N -0.99 -19.04 3.23 -106.48 -0.34 -19.39 16 12 S 2.69 60.16 4.43 -107.50 -0.48 59.68 16 13 O -0.95 -21.58 12.21 -67.58 -0.83 -22.40 16 14 O -0.99 -24.46 14.06 -57.17 -0.80 -25.27 16 15 C -0.78 -18.17 4.62 -38.87 -0.18 -18.35 16 16 C 0.00 -0.06 7.41 -39.66 -0.29 -0.36 16 17 C -0.25 -5.35 10.05 -39.29 -0.39 -5.75 16 18 C -0.08 -1.73 10.02 -39.66 -0.40 -2.12 16 19 C -0.16 -3.89 8.72 -38.87 -0.34 -4.23 16 20 C 0.19 4.56 5.60 -106.82 -0.60 3.96 16 21 C -0.46 -10.89 6.79 -37.74 -0.26 -11.15 16 22 H 0.11 2.71 3.95 -52.48 -0.21 2.50 16 23 C 0.08 1.84 4.04 -17.34 -0.07 1.77 16 24 N -0.77 -17.11 10.76 55.55 0.60 -16.51 16 25 Si 0.90 17.10 29.43 -169.99 -5.00 12.10 16 26 H -0.25 -4.58 7.11 56.52 0.40 -4.18 16 27 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 28 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.90 6.89 -51.93 -0.36 0.55 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.36 5.35 9.08 45.56 0.41 5.76 16 33 H 0.07 0.87 6.85 -51.93 -0.36 0.51 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.85 5.20 -51.93 -0.27 1.58 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.79 5.82 -51.93 -0.30 1.49 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.11 2.09 7.31 -52.48 -0.38 1.70 16 42 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 44 H 0.13 3.07 5.95 -52.49 -0.31 2.76 16 45 H 0.29 5.84 8.30 -40.82 -0.34 5.50 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -27.98 341.66 -10.49 -38.47 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -5.29 Total: 16.99 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: -2.93 Total: -39.05 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.25 Total: -35.89 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -2.19 Total: -57.45 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.00 Total: 12.10 kcal Atomic # 16 Polarization: 60.16 SS G_CDS: -0.48 Total: 59.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.98 -10.49 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.123 kcal (2) G-P(sol) polarization free energy of solvation -27.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds