Wall clock time and date at job start Tue Mar 31 2020 22:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46984 * 2 1 4 4 O 1.42901 * 109.47193 * 119.99807 * 2 1 3 5 5 C 1.53006 * 109.47213 * 239.99773 * 2 1 3 6 6 H 1.09000 * 109.58511 * 286.02598 * 5 2 1 7 7 C 1.53191 * 109.58378 * 46.45792 * 5 2 1 8 8 C 1.53038 * 109.30909 * 174.42322 * 7 5 2 9 9 C 1.53039 * 109.53703 * 298.63042 * 8 7 5 10 10 C 1.53189 * 109.31309 * 61.37034 * 9 8 7 11 11 N 1.46924 * 109.58516 * 165.74207 * 5 2 1 12 12 S 1.65605 * 120.63121 * 6.62977 * 11 5 2 13 13 O 1.42102 * 106.39971 * 45.39380 * 12 11 5 14 14 O 1.42098 * 106.39880 * 178.31012 * 12 11 5 15 15 C 1.76201 * 107.21871 * 291.85111 * 12 11 5 16 16 C 1.37630 * 120.12608 * 113.86022 * 15 12 11 17 17 C 1.38617 * 120.24588 * 179.70091 * 16 15 12 18 18 C 1.38652 * 120.49933 * 0.59795 * 17 16 15 19 19 C 1.37591 * 120.25226 * 359.68760 * 18 17 16 20 20 C 1.40700 * 120.12588 * 294.13773 * 15 12 11 21 21 C 1.41397 * 120.24424 * 0.02562 * 20 15 12 22 22 H 1.08005 * 119.99796 * 337.94358 * 21 20 15 23 23 C 1.39945 * 120.00005 * 157.95051 * 21 20 15 24 24 N 1.30824 * 119.99796 * 342.66452 * 23 21 20 25 25 Si 1.86802 * 120.00075 * 162.66344 * 23 21 20 26 26 H 1.48495 * 109.46698 * 60.00004 * 25 23 21 27 27 H 1.48501 * 109.46819 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46912 * 300.00007 * 25 23 21 29 29 H 1.08997 * 109.47200 * 293.38450 * 1 2 3 30 30 H 1.09000 * 109.47249 * 53.39175 * 1 2 3 31 31 H 1.09006 * 109.47300 * 173.38482 * 1 2 3 32 32 H 0.96695 * 114.00378 * 300.00382 * 4 2 1 33 33 H 1.09006 * 109.49544 * 294.37320 * 7 5 2 34 34 H 1.08998 * 109.50161 * 54.46470 * 7 5 2 35 35 H 1.09002 * 109.45732 * 178.61324 * 8 7 5 36 36 H 1.08996 * 109.46663 * 58.65534 * 8 7 5 37 37 H 1.09004 * 109.49667 * 301.41382 * 9 8 7 38 38 H 1.09001 * 109.49358 * 181.32210 * 9 8 7 39 39 H 1.08995 * 109.58789 * 185.58016 * 10 9 8 40 40 H 1.08994 * 109.70633 * 65.21604 * 10 9 8 41 41 H 1.08008 * 119.87975 * 359.97438 * 16 15 12 42 42 H 1.08005 * 119.74783 * 180.30387 * 17 16 15 43 43 H 1.08003 * 119.87405 * 179.70191 * 18 17 16 44 44 H 1.07995 * 120.13004 * 179.97438 * 19 18 17 45 45 H 0.96998 * 119.99930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 1 1.8945 -1.7956 -1.1359 7 6 1.2738 -0.2231 -2.4787 8 6 1.8810 -0.8434 -3.7390 9 6 3.3420 -0.4075 -3.8712 10 6 4.1317 -0.9078 -2.6576 11 7 3.4690 -0.4346 -1.4345 12 16 4.3169 0.4052 -0.2864 13 8 3.9552 -0.1544 0.9687 14 8 5.6588 0.4739 -0.7490 15 6 3.7041 2.0572 -0.2899 16 6 3.0319 2.5469 0.8067 17 6 2.5541 3.8482 0.8090 18 6 2.7362 4.6666 -0.2953 19 6 3.4002 4.1963 -1.4048 20 6 3.8951 2.8788 -1.4160 21 6 4.5786 2.3844 -2.5507 22 1 5.2522 1.5458 -2.4525 23 6 4.3825 2.9816 -3.8011 24 7 3.3443 3.7518 -4.0024 25 14 5.6031 2.6792 -5.1824 26 1 5.6595 1.2262 -5.4837 27 1 5.1714 3.4194 -6.3952 28 1 6.9482 3.1511 -4.7664 29 1 -0.3633 0.4079 0.9432 30 1 -0.3634 0.6128 -0.8249 31 1 -0.3634 -1.0209 -0.1184 32 1 1.7210 -0.2702 1.9979 33 1 0.2267 -0.5150 -2.3976 34 1 1.3456 0.8630 -2.5367 35 1 1.3220 -0.5099 -4.6134 36 1 1.8311 -1.9300 -3.6693 37 1 3.3944 0.6803 -3.9162 38 1 3.7669 -0.8306 -4.7814 39 1 5.1484 -0.5169 -2.6968 40 1 4.1587 -1.9974 -2.6604 41 1 2.8798 1.9165 1.6703 42 1 2.0320 4.2258 1.6757 43 1 2.3556 5.6773 -0.2844 44 1 3.5405 4.8353 -2.2640 45 1 3.2082 4.1654 -4.8692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:54 Heat of formation + Delta-G solvation = -111.912498 kcal Electronic energy + Delta-G solvation = -31085.817476 eV Core-core repulsion = 27194.514920 eV Total energy + Delta-G solvation = -3891.302556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.23944 -39.24792 -38.34010 -36.94757 -36.38873 -35.68998 -33.27210 -33.13528 -31.98246 -31.33965 -29.74571 -27.29978 -25.49229 -24.86029 -23.35911 -22.91969 -21.95318 -21.17080 -19.55555 -19.46129 -18.53052 -17.81386 -17.46016 -17.16699 -16.84999 -16.06242 -15.66303 -15.53534 -15.21123 -15.05697 -14.92425 -14.87006 -14.68724 -14.42537 -14.29342 -13.64357 -13.53641 -13.35826 -13.15454 -13.00115 -12.88873 -12.83200 -12.71531 -12.55274 -12.41642 -12.33653 -12.13433 -12.07880 -11.80000 -11.65756 -11.60079 -11.23765 -11.14322 -11.01089 -10.82786 -10.48419 -9.72287 -9.53536 -9.36577 -8.80231 -6.54149 -0.00941 0.61628 1.00900 1.35741 1.43792 1.51693 2.13982 2.35858 2.62530 3.13352 3.34801 3.57725 3.70922 3.90686 4.11495 4.22421 4.27657 4.30759 4.35102 4.39790 4.45285 4.53755 4.60061 4.69265 4.76831 4.82235 4.89243 4.93645 5.00869 5.03536 5.11767 5.14895 5.24641 5.29262 5.32588 5.36532 5.43234 5.48285 5.59080 5.71808 5.76170 5.89399 6.01639 6.07263 6.19271 6.57283 6.73494 6.90196 7.10736 8.12707 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.007773 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.531475 B = 3601.527533 C = 4407.834311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 H 0.069 0.931 4 O -0.533 6.533 5 C 0.175 3.825 6 H 0.085 0.915 7 C -0.122 4.122 8 C -0.104 4.104 9 C -0.148 4.148 10 C 0.119 3.881 11 N -0.986 5.986 12 S 2.698 3.302 13 O -0.960 6.960 14 O -1.019 7.019 15 C -0.795 4.795 16 C -0.006 4.006 17 C -0.257 4.257 18 C -0.079 4.079 19 C -0.192 4.192 20 C 0.162 3.838 21 C -0.473 4.473 22 H 0.099 0.901 23 C 0.061 3.939 24 N -0.784 5.784 25 Si 0.942 3.058 26 H -0.239 1.239 27 H -0.259 1.259 28 H -0.270 1.270 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.376 0.624 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 -6.050 -1.616 9.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 H 0.086 0.914 4 O -0.339 6.339 5 C 0.070 3.930 6 H 0.103 0.897 7 C -0.161 4.161 8 C -0.142 4.142 9 C -0.187 4.187 10 C -0.006 4.006 11 N -0.824 5.824 12 S 2.796 3.204 13 O -0.950 6.950 14 O -1.010 7.010 15 C -0.889 4.889 16 C -0.026 4.026 17 C -0.278 4.278 18 C -0.097 4.097 19 C -0.212 4.212 20 C 0.157 3.843 21 C -0.500 4.500 22 H 0.117 0.883 23 C -0.159 4.159 24 N -0.407 5.407 25 Si 0.763 3.237 26 H -0.162 1.162 27 H -0.182 1.182 28 H -0.194 1.194 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.224 0.776 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.185 -6.697 -1.726 9.278 hybrid contribution 0.005 1.492 -0.369 1.537 sum -6.180 -5.205 -2.095 8.347 Atomic orbital electron populations 1.22343 0.93328 1.03397 1.03265 1.22791 0.96257 0.97305 0.86772 0.91365 1.86838 1.76075 1.56060 1.14945 1.20908 0.78900 0.99817 0.93421 0.89681 1.21920 0.99703 1.00428 0.94009 1.21380 0.94839 1.00822 0.97112 1.22076 0.96575 1.02795 0.97220 1.21472 0.96245 0.99206 0.83668 1.57491 1.19460 1.70562 1.34860 1.01172 0.72274 0.73943 0.73060 1.93605 1.82868 1.77381 1.41193 1.93378 1.37090 1.88246 1.82310 1.30108 1.29402 1.23303 1.06072 1.20406 0.91853 0.95511 0.94801 1.20802 1.11481 0.95555 0.99915 1.21178 0.96458 0.98701 0.93411 1.21643 1.04509 0.96430 0.98581 1.17247 0.86322 0.90779 0.89904 1.20447 1.21788 1.15371 0.92426 0.88299 1.26482 0.95611 0.92237 1.01617 1.69814 1.23466 1.21541 1.25869 0.85828 0.79207 0.81535 0.77177 1.16233 1.18239 1.19441 0.91115 0.91287 0.90539 0.77620 0.88722 0.93471 0.91160 0.90343 0.91445 0.90104 0.90933 0.89863 0.86122 0.85953 0.86623 0.86575 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.52 71.98 0.61 -3.48 16 2 C 0.03 0.93 2.56 30.60 0.08 1.01 16 3 H 0.07 2.60 2.99 -2.39 -0.01 2.59 16 4 O -0.53 -18.34 9.28 -124.52 -1.16 -19.49 16 5 C 0.18 5.71 2.84 44.98 0.13 5.84 16 6 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 7 C -0.12 -3.56 4.39 30.67 0.13 -3.42 16 8 C -0.10 -2.75 5.88 30.62 0.18 -2.57 16 9 C -0.15 -4.70 6.08 30.67 0.19 -4.51 16 10 C 0.12 4.14 5.82 86.36 0.50 4.64 16 11 N -0.99 -37.75 3.23 -490.78 -1.59 -39.34 16 12 S 2.70 122.68 4.43 -56.49 -0.25 122.43 16 13 O -0.96 -43.63 12.21 -118.05 -1.44 -45.08 16 14 O -1.02 -52.40 14.06 -128.00 -1.80 -54.20 16 15 C -0.80 -37.59 4.62 22.73 0.11 -37.49 16 16 C -0.01 -0.26 7.41 22.22 0.16 -0.10 16 17 C -0.26 -10.55 10.05 22.46 0.23 -10.33 16 18 C -0.08 -3.41 10.02 22.22 0.22 -3.19 16 19 C -0.19 -9.39 8.72 22.73 0.20 -9.19 16 20 C 0.16 8.17 5.60 -21.29 -0.12 8.06 16 21 C -0.47 -23.38 6.79 23.46 0.16 -23.22 16 22 H 0.10 5.05 3.95 -2.91 -0.01 5.04 16 23 C 0.06 2.77 4.04 85.26 0.34 3.11 16 24 N -0.78 -35.46 10.76 21.83 0.23 -35.22 16 25 Si 0.94 34.97 29.43 68.60 2.02 36.99 16 26 H -0.24 -8.28 7.11 99.48 0.71 -7.57 16 27 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 28 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.69 6.89 -2.39 -0.02 1.67 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.38 10.56 9.08 -74.06 -0.67 9.88 16 33 H 0.09 2.19 6.85 -2.38 -0.02 2.18 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 2.58 5.20 -2.39 -0.01 2.57 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 39 H 0.07 2.82 5.82 -2.39 -0.01 2.81 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.12 4.71 7.31 -2.91 -0.02 4.68 16 42 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 43 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 44 H 0.12 5.81 5.95 -2.91 -0.02 5.79 16 45 H 0.30 12.05 8.30 -92.71 -0.77 11.28 16 Total: -1.00 -61.52 341.66 -0.50 -62.02 By element: Atomic # 1 Polarization: 46.39 SS G_CDS: 0.36 Total: 46.75 kcal Atomic # 6 Polarization: -77.97 SS G_CDS: 3.12 Total: -74.85 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -1.35 Total: -74.57 kcal Atomic # 8 Polarization: -114.37 SS G_CDS: -4.40 Total: -118.77 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.02 Total: 36.99 kcal Atomic # 16 Polarization: 122.68 SS G_CDS: -0.25 Total: 122.43 kcal Total: -61.52 -0.50 -62.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.896 kcal (2) G-P(sol) polarization free energy of solvation -61.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds