Wall clock time and date at job start Tue Mar 31 2020 23:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00064 * 2 1 4 4 C 1.53007 * 109.47158 * 280.61934 * 3 2 1 5 5 O 1.42904 * 110.01246 * 57.74377 * 4 3 2 6 6 C 1.54262 * 110.03123 * 296.35657 * 4 3 2 7 7 C 1.54963 * 104.15862 * 217.13568 * 6 4 3 8 8 C 1.54899 * 102.77776 * 37.88395 * 7 6 4 9 9 C 1.53872 * 110.03094 * 179.13330 * 4 3 2 10 10 S 1.65599 * 119.99940 * 179.97438 * 2 1 3 11 11 O 1.42104 * 106.40084 * 162.99659 * 10 2 1 12 12 O 1.42098 * 106.40393 * 30.07913 * 10 2 1 13 13 C 1.76198 * 107.21970 * 276.53495 * 10 2 1 14 14 C 1.37643 * 120.12779 * 115.41519 * 13 10 2 15 15 C 1.38611 * 120.24442 * 180.32227 * 14 13 10 16 16 C 1.38656 * 120.50411 * 359.66981 * 15 14 13 17 17 C 1.37596 * 120.24791 * 359.97438 * 16 15 14 18 18 C 1.40697 * 120.12680 * 295.10557 * 13 10 2 19 19 C 1.41391 * 120.24545 * 359.97438 * 18 13 10 20 20 H 1.08001 * 120.00208 * 318.37079 * 19 18 13 21 21 C 1.39952 * 119.99886 * 138.36976 * 19 18 13 22 22 N 1.30821 * 120.00285 * 352.41778 * 21 19 18 23 23 Si 1.86801 * 119.99774 * 172.42260 * 21 19 18 24 24 H 1.48494 * 109.47334 * 273.61436 * 23 21 19 25 25 H 1.48500 * 109.47300 * 33.61924 * 23 21 19 26 26 H 1.48506 * 109.46990 * 153.61640 * 23 21 19 27 27 H 1.08997 * 109.46939 * 270.00084 * 1 2 3 28 28 H 1.09001 * 109.46603 * 30.00362 * 1 2 3 29 29 H 1.08996 * 109.46807 * 150.00435 * 1 2 3 30 30 H 1.09004 * 109.47131 * 40.61728 * 3 2 1 31 31 H 1.08996 * 109.47545 * 160.61922 * 3 2 1 32 32 H 0.96700 * 114.00155 * 300.69775 * 5 4 3 33 33 H 1.09003 * 110.48297 * 335.77582 * 6 4 3 34 34 H 1.08988 * 110.49226 * 98.42246 * 6 4 3 35 35 H 1.08996 * 110.72146 * 279.57478 * 7 6 4 36 36 H 1.08996 * 110.76989 * 156.22191 * 7 6 4 37 37 H 1.08997 * 110.48346 * 203.40934 * 8 7 6 38 38 H 1.09002 * 110.48407 * 80.76533 * 8 7 6 39 39 H 1.09001 * 110.03185 * 238.56630 * 9 4 3 40 40 H 1.08992 * 110.03602 * 0.02562 * 9 4 3 41 41 H 1.08002 * 119.87636 * 0.02562 * 14 13 10 42 42 H 1.07998 * 119.74704 * 179.68719 * 15 14 13 43 43 H 1.08003 * 119.87671 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.12506 * 180.02562 * 17 16 15 45 45 H 0.97002 * 119.99884 * 354.18625 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2223 1.8433 -1.4179 5 8 0.8878 2.0219 -1.8966 6 6 2.9987 0.8979 -2.3576 7 6 3.7596 1.8529 -3.3119 8 6 4.1767 3.0133 -2.3744 9 6 2.9706 3.1878 -1.4286 10 16 2.2930 -1.4341 0.0006 11 8 3.6226 -1.1300 -0.3981 12 8 1.4721 -2.3718 -0.6821 13 6 2.3879 -1.9809 1.6730 14 6 1.7589 -3.1436 2.0564 15 6 1.8264 -3.5724 3.3728 16 6 2.5323 -2.8412 4.3160 17 6 3.1749 -1.6797 3.9535 18 6 3.1124 -1.2341 2.6200 19 6 3.7686 -0.0419 2.2361 20 1 4.3035 0.0023 1.2989 21 6 3.7248 1.0808 3.0706 22 7 2.9580 1.0786 4.1305 23 14 4.7613 2.5825 2.6708 24 1 6.1178 2.4167 3.2518 25 1 4.8689 2.7318 1.1972 26 1 4.1212 3.7930 3.2455 27 1 -0.3633 0.0000 1.0276 28 1 -0.3632 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.7036 1.9734 0.6690 31 1 3.2187 1.0987 0.3410 32 1 0.3673 1.2074 -1.9238 33 1 3.7008 0.2875 -1.7896 34 1 2.3095 0.2666 -2.9182 35 1 3.1014 2.2128 -4.1026 36 1 4.6369 1.3612 -3.7320 37 1 4.3470 3.9245 -2.9478 38 1 5.0692 2.7448 -1.8090 39 1 2.3161 3.9764 -1.8000 40 1 3.3164 3.4308 -0.4240 41 1 1.2067 -3.7213 1.3300 42 1 1.3256 -4.4833 3.6660 43 1 2.5786 -3.1849 5.3388 44 1 3.7245 -1.1119 4.6897 45 1 2.3571 0.3346 4.2928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:37 Heat of formation + Delta-G solvation = -113.364500 kcal Electronic energy + Delta-G solvation = -30178.511395 eV Core-core repulsion = 26287.145876 eV Total energy + Delta-G solvation = -3891.365519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.29169 -37.99993 -36.52512 -35.41203 -35.07826 -34.34404 -33.99945 -30.33201 -29.56380 -29.43381 -28.49670 -25.87581 -25.39034 -23.61183 -21.98543 -21.27226 -20.70845 -19.61981 -18.55868 -18.13183 -17.18067 -16.45746 -16.18510 -15.86674 -15.32345 -15.02115 -14.79924 -14.40146 -14.13100 -13.69124 -13.61219 -13.33470 -13.11288 -13.06076 -12.78315 -12.50557 -12.34255 -12.07920 -11.82835 -11.57957 -11.49593 -11.41470 -11.26526 -11.15313 -10.98892 -10.91524 -10.84271 -10.80757 -10.61203 -10.48161 -10.32611 -10.22055 -9.80112 -9.78790 -9.44988 -9.27774 -8.43894 -8.28071 -7.80036 -7.38378 -4.93361 1.31804 2.06278 2.51513 3.02868 3.07226 3.20289 3.66011 3.82786 4.32214 4.41413 4.54025 4.80957 4.83935 4.98617 5.11916 5.14468 5.34527 5.44449 5.63856 5.69104 5.76724 5.78319 5.84287 5.88925 5.94362 5.95148 6.04188 6.09109 6.11410 6.15212 6.23996 6.31620 6.42824 6.45954 6.47386 6.57989 6.70686 6.74345 7.03593 7.07254 7.20767 7.32664 7.44904 7.59355 7.75964 7.89454 7.90155 8.28858 8.56388 9.88273 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.006831 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.948051 B = 4098.075564 C = 5538.655082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.993 5.993 3 C 0.097 3.903 4 C 0.113 3.887 5 O -0.563 6.563 6 C -0.179 4.179 7 C -0.117 4.117 8 C -0.124 4.124 9 C -0.113 4.113 10 S 2.706 3.294 11 O -0.965 6.965 12 O -0.995 6.995 13 C -0.768 4.768 14 C 0.002 3.998 15 C -0.246 4.246 16 C -0.060 4.060 17 C -0.199 4.199 18 C 0.180 3.820 19 C -0.546 4.546 20 H 0.113 0.887 21 C 0.043 3.957 22 N -0.803 5.803 23 Si 1.052 2.948 24 H -0.271 1.271 25 H -0.262 1.262 26 H -0.271 1.271 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.372 0.628 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 3.512 -6.789 7.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.829 5.829 3 C -0.029 4.029 4 C 0.071 3.929 5 O -0.372 6.372 6 C -0.216 4.216 7 C -0.155 4.155 8 C -0.162 4.162 9 C -0.151 4.151 10 S 2.804 3.196 11 O -0.955 6.955 12 O -0.985 6.985 13 C -0.862 4.862 14 C -0.018 4.018 15 C -0.266 4.266 16 C -0.079 4.079 17 C -0.218 4.218 18 C 0.175 3.825 19 C -0.575 4.575 20 H 0.131 0.869 21 C -0.179 4.179 22 N -0.427 5.427 23 Si 0.874 3.126 24 H -0.196 1.196 25 H -0.186 1.186 26 H -0.195 1.195 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.222 0.778 33 H 0.132 0.868 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.130 0.870 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.800 5.245 -6.985 8.771 hybrid contribution -0.922 -2.290 0.689 2.563 sum -1.722 2.955 -6.296 7.165 Atomic orbital electron populations 1.21692 0.79651 1.03291 1.02412 1.57223 1.14254 1.21375 1.90006 1.22413 0.99904 0.84980 0.95558 1.22410 0.82304 0.95159 0.93034 1.86499 1.24693 1.37808 1.88203 1.23569 1.00942 0.98627 0.98488 1.22402 0.99520 0.96091 0.97446 1.22364 0.98015 0.98412 0.97361 1.22127 0.96305 0.95882 1.00767 1.01004 0.72805 0.71405 0.74404 1.93420 1.36229 1.83517 1.82360 1.93441 1.70057 1.61459 1.73587 1.30153 1.20112 1.11612 1.24295 1.20390 0.92810 0.92955 0.95661 1.20576 1.09525 1.02654 0.93840 1.20934 0.94891 0.94545 0.97497 1.21476 1.04893 0.97745 0.97735 1.17119 0.85029 0.89970 0.90389 1.21286 1.30202 0.96348 1.09646 0.86898 1.26983 0.96896 1.02617 0.91382 1.70429 1.15311 1.34838 1.22091 0.83856 0.76436 0.74414 0.77874 1.19627 1.18618 1.19544 0.92734 0.90256 0.90423 0.90464 0.86228 0.77814 0.86849 0.92028 0.91863 0.91663 0.91672 0.91060 0.90484 0.90440 0.87074 0.88122 0.88263 0.87037 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 9.78 59.85 0.59 1.70 16 2 N -0.99 -17.84 2.83 -121.76 -0.34 -18.18 16 3 C 0.10 1.72 3.76 -4.04 -0.02 1.71 16 4 C 0.11 1.79 1.12 -89.50 -0.10 1.69 16 5 O -0.56 -8.49 12.17 -35.23 -0.43 -8.92 16 6 C -0.18 -2.88 5.44 -25.03 -0.14 -3.02 16 7 C -0.12 -1.59 6.91 -24.69 -0.17 -1.76 16 8 C -0.12 -1.62 6.83 -25.07 -0.17 -1.79 16 9 C -0.11 -1.62 6.27 -25.61 -0.16 -1.78 16 10 S 2.71 56.91 4.82 -107.50 -0.52 56.39 16 11 O -0.96 -21.60 11.76 -57.17 -0.67 -22.27 16 12 O -0.99 -21.67 15.71 -57.17 -0.90 -22.57 16 13 C -0.77 -17.69 5.96 -38.87 -0.23 -17.92 16 14 C 0.00 0.04 9.53 -39.66 -0.38 -0.34 16 15 C -0.25 -5.08 10.05 -39.29 -0.39 -5.48 16 16 C -0.06 -1.26 10.02 -39.66 -0.40 -1.66 16 17 C -0.20 -4.65 7.68 -38.87 -0.30 -4.95 16 18 C 0.18 4.35 5.14 -106.83 -0.55 3.80 16 19 C -0.55 -12.92 5.81 -37.74 -0.22 -13.14 16 20 H 0.11 2.69 4.75 -52.49 -0.25 2.44 16 21 C 0.04 0.97 5.23 -17.34 -0.09 0.88 16 22 N -0.80 -19.40 12.76 55.55 0.71 -18.70 16 23 Si 1.05 19.75 29.38 -169.99 -4.99 14.75 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.26 -4.42 6.92 56.52 0.39 -4.03 16 26 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.98 5.48 -51.93 -0.28 0.69 16 29 H 0.08 1.09 7.09 -51.93 -0.37 0.73 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.12 2.34 3.72 -51.93 -0.19 2.14 16 32 H 0.37 4.92 5.96 45.56 0.27 5.19 16 33 H 0.11 2.08 4.86 -51.93 -0.25 1.83 16 34 H 0.06 0.96 8.05 -51.94 -0.42 0.54 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 40 H 0.08 1.10 7.49 -51.93 -0.39 0.71 16 41 H 0.11 2.23 7.33 -52.49 -0.38 1.85 16 42 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 44 H 0.11 2.64 7.05 -52.48 -0.37 2.27 16 45 H 0.30 7.42 5.99 -40.82 -0.24 7.18 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -27.60 350.79 -10.07 -37.67 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -5.48 Total: 18.58 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: -2.73 Total: -42.04 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.36 Total: -36.88 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -2.00 Total: -53.76 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.99 Total: 14.75 kcal Atomic # 16 Polarization: 56.91 SS G_CDS: -0.52 Total: 56.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.60 -10.07 -37.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.695 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds