Wall clock time and date at job start Tue Mar 31 2020 23:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00064 * 2 1 4 4 C 1.53007 * 109.47158 * 280.61934 * 3 2 1 5 5 O 1.42904 * 110.01246 * 57.74377 * 4 3 2 6 6 C 1.54262 * 110.03123 * 296.35657 * 4 3 2 7 7 C 1.54963 * 104.15862 * 217.13568 * 6 4 3 8 8 C 1.54899 * 102.77776 * 37.88395 * 7 6 4 9 9 C 1.53872 * 110.03094 * 179.13330 * 4 3 2 10 10 S 1.65599 * 119.99940 * 179.97438 * 2 1 3 11 11 O 1.42104 * 106.40084 * 162.99659 * 10 2 1 12 12 O 1.42098 * 106.40393 * 30.07913 * 10 2 1 13 13 C 1.76198 * 107.21970 * 276.53495 * 10 2 1 14 14 C 1.37643 * 120.12779 * 115.41519 * 13 10 2 15 15 C 1.38611 * 120.24442 * 180.32227 * 14 13 10 16 16 C 1.38656 * 120.50411 * 359.66981 * 15 14 13 17 17 C 1.37596 * 120.24791 * 359.97438 * 16 15 14 18 18 C 1.40697 * 120.12680 * 295.10557 * 13 10 2 19 19 C 1.41391 * 120.24545 * 359.97438 * 18 13 10 20 20 H 1.08001 * 120.00208 * 318.37079 * 19 18 13 21 21 C 1.39952 * 119.99886 * 138.36976 * 19 18 13 22 22 N 1.30821 * 120.00285 * 352.41778 * 21 19 18 23 23 Si 1.86801 * 119.99774 * 172.42260 * 21 19 18 24 24 H 1.48494 * 109.47334 * 273.61436 * 23 21 19 25 25 H 1.48500 * 109.47300 * 33.61924 * 23 21 19 26 26 H 1.48506 * 109.46990 * 153.61640 * 23 21 19 27 27 H 1.08997 * 109.46939 * 270.00084 * 1 2 3 28 28 H 1.09001 * 109.46603 * 30.00362 * 1 2 3 29 29 H 1.08996 * 109.46807 * 150.00435 * 1 2 3 30 30 H 1.09004 * 109.47131 * 40.61728 * 3 2 1 31 31 H 1.08996 * 109.47545 * 160.61922 * 3 2 1 32 32 H 0.96700 * 114.00155 * 300.69775 * 5 4 3 33 33 H 1.09003 * 110.48297 * 335.77582 * 6 4 3 34 34 H 1.08988 * 110.49226 * 98.42246 * 6 4 3 35 35 H 1.08996 * 110.72146 * 279.57478 * 7 6 4 36 36 H 1.08996 * 110.76989 * 156.22191 * 7 6 4 37 37 H 1.08997 * 110.48346 * 203.40934 * 8 7 6 38 38 H 1.09002 * 110.48407 * 80.76533 * 8 7 6 39 39 H 1.09001 * 110.03185 * 238.56630 * 9 4 3 40 40 H 1.08992 * 110.03602 * 0.02562 * 9 4 3 41 41 H 1.08002 * 119.87636 * 0.02562 * 14 13 10 42 42 H 1.07998 * 119.74704 * 179.68719 * 15 14 13 43 43 H 1.08003 * 119.87671 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.12506 * 180.02562 * 17 16 15 45 45 H 0.97002 * 119.99884 * 354.18625 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2223 1.8433 -1.4179 5 8 0.8878 2.0219 -1.8966 6 6 2.9987 0.8979 -2.3576 7 6 3.7596 1.8529 -3.3119 8 6 4.1767 3.0133 -2.3744 9 6 2.9706 3.1878 -1.4286 10 16 2.2930 -1.4341 0.0006 11 8 3.6226 -1.1300 -0.3981 12 8 1.4721 -2.3718 -0.6821 13 6 2.3879 -1.9809 1.6730 14 6 1.7589 -3.1436 2.0564 15 6 1.8264 -3.5724 3.3728 16 6 2.5323 -2.8412 4.3160 17 6 3.1749 -1.6797 3.9535 18 6 3.1124 -1.2341 2.6200 19 6 3.7686 -0.0419 2.2361 20 1 4.3035 0.0023 1.2989 21 6 3.7248 1.0808 3.0706 22 7 2.9580 1.0786 4.1305 23 14 4.7613 2.5825 2.6708 24 1 6.1178 2.4167 3.2518 25 1 4.8689 2.7318 1.1972 26 1 4.1212 3.7930 3.2455 27 1 -0.3633 0.0000 1.0276 28 1 -0.3632 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.7036 1.9734 0.6690 31 1 3.2187 1.0987 0.3410 32 1 0.3673 1.2074 -1.9238 33 1 3.7008 0.2875 -1.7896 34 1 2.3095 0.2666 -2.9182 35 1 3.1014 2.2128 -4.1026 36 1 4.6369 1.3612 -3.7320 37 1 4.3470 3.9245 -2.9478 38 1 5.0692 2.7448 -1.8090 39 1 2.3161 3.9764 -1.8000 40 1 3.3164 3.4308 -0.4240 41 1 1.2067 -3.7213 1.3300 42 1 1.3256 -4.4833 3.6660 43 1 2.5786 -3.1849 5.3388 44 1 3.7245 -1.1119 4.6897 45 1 2.3571 0.3346 4.2928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:36 Heat of formation + Delta-G solvation = -130.289857 kcal Electronic energy + Delta-G solvation = -30179.245334 eV Core-core repulsion = 26287.145876 eV Total energy + Delta-G solvation = -3892.099458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51946 -39.72096 -38.22186 -36.78737 -36.69211 -35.83808 -35.45390 -32.05195 -31.29940 -30.67299 -29.64119 -27.31799 -26.93331 -24.95902 -23.68081 -23.00432 -21.82555 -20.79899 -20.25613 -19.73627 -18.74769 -17.97181 -17.57673 -17.29117 -16.75400 -16.43480 -16.24761 -15.92898 -15.66374 -15.26590 -15.18094 -14.80072 -14.46563 -14.35619 -14.32897 -14.04854 -13.60097 -13.47403 -13.21308 -13.13805 -13.10262 -12.95886 -12.86338 -12.76927 -12.41572 -12.36608 -12.10506 -12.00067 -11.94519 -11.81380 -11.63210 -11.52688 -11.32871 -11.13917 -11.02868 -10.96262 -10.11606 -9.71559 -9.56089 -9.17385 -6.73777 -0.31022 0.32253 0.77782 1.48975 1.56848 1.74859 2.11918 2.28213 2.61417 2.87186 3.23794 3.26971 3.52507 3.67113 3.70555 3.89680 4.00595 4.13150 4.26798 4.32307 4.42977 4.50909 4.55193 4.61311 4.63058 4.73327 4.79496 4.82408 4.86754 4.93324 4.97837 5.02040 5.06496 5.15013 5.21895 5.29712 5.31093 5.36293 5.45801 5.52572 5.54021 5.70844 5.74520 5.81701 5.97876 6.13962 6.53133 6.75389 6.80763 8.07963 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.006831 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.948051 B = 4098.075564 C = 5538.655082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.989 5.989 3 C 0.095 3.905 4 C 0.117 3.883 5 O -0.562 6.562 6 C -0.186 4.186 7 C -0.114 4.114 8 C -0.123 4.123 9 C -0.117 4.117 10 S 2.718 3.282 11 O -0.982 6.982 12 O -1.004 7.004 13 C -0.787 4.787 14 C -0.015 4.015 15 C -0.242 4.242 16 C -0.058 4.058 17 C -0.222 4.222 18 C 0.155 3.845 19 C -0.558 4.558 20 H 0.106 0.894 21 C 0.020 3.980 22 N -0.825 5.825 23 Si 1.077 2.923 24 H -0.266 1.266 25 H -0.236 1.236 26 H -0.266 1.266 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.379 0.621 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 4.180 -7.815 9.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.826 5.826 3 C -0.030 4.030 4 C 0.075 3.925 5 O -0.372 6.372 6 C -0.224 4.224 7 C -0.151 4.151 8 C -0.160 4.160 9 C -0.155 4.155 10 S 2.815 3.185 11 O -0.973 6.973 12 O -0.995 6.995 13 C -0.879 4.879 14 C -0.035 4.035 15 C -0.261 4.261 16 C -0.077 4.077 17 C -0.242 4.242 18 C 0.151 3.849 19 C -0.587 4.587 20 H 0.123 0.877 21 C -0.196 4.196 22 N -0.450 5.450 23 Si 0.894 3.106 24 H -0.191 1.191 25 H -0.159 1.159 26 H -0.190 1.190 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.117 0.883 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.356 5.877 -8.002 10.021 hybrid contribution -0.841 -2.641 1.017 2.952 sum -2.197 3.236 -6.986 8.006 Atomic orbital electron populations 1.21934 0.77725 1.05099 1.02856 1.57028 1.15459 1.20436 1.89687 1.22445 0.98869 0.84591 0.97114 1.22359 0.82807 0.95879 0.91480 1.86492 1.24390 1.38360 1.87949 1.23566 1.00820 0.99051 0.98975 1.22420 0.99731 0.95698 0.97292 1.22397 0.97154 0.99307 0.97150 1.22205 0.96890 0.95134 1.01238 1.00581 0.72512 0.71826 0.73604 1.93401 1.37574 1.83887 1.82396 1.93418 1.70191 1.62372 1.73502 1.30582 1.19950 1.12154 1.25222 1.20746 0.93008 0.92891 0.96814 1.21024 1.08490 1.03414 0.93211 1.21305 0.93645 0.93464 0.99256 1.21516 1.06261 0.98961 0.97489 1.17427 0.85695 0.90654 0.91160 1.21283 1.30945 0.96764 1.09721 0.87660 1.28022 0.96732 1.04372 0.90523 1.70528 1.16478 1.34641 1.23321 0.83619 0.75440 0.72059 0.79523 1.19138 1.15851 1.19019 0.93015 0.87467 0.89614 0.90502 0.88085 0.77014 0.89311 0.92120 0.90635 0.90917 0.89075 0.91515 0.89372 0.90592 0.85596 0.84610 0.85124 0.88290 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.95 9.78 127.77 1.25 3.20 16 2 N -0.99 -35.22 2.83 -539.12 -1.53 -36.75 16 3 C 0.10 3.35 3.76 86.38 0.32 3.67 16 4 C 0.12 3.55 1.12 -10.07 -0.01 3.54 16 5 O -0.56 -15.74 12.17 -148.98 -1.81 -17.55 16 6 C -0.19 -5.83 5.44 31.69 0.17 -5.65 16 7 C -0.11 -2.86 6.91 31.91 0.22 -2.63 16 8 C -0.12 -2.89 6.83 31.67 0.22 -2.67 16 9 C -0.12 -3.10 6.27 31.32 0.20 -2.90 16 10 S 2.72 114.95 4.82 -56.49 -0.27 114.68 16 11 O -0.98 -44.86 11.76 -128.00 -1.50 -46.37 16 12 O -1.00 -43.37 15.71 -128.00 -2.01 -45.38 16 13 C -0.79 -36.56 5.96 22.73 0.14 -36.43 16 14 C -0.01 -0.64 9.53 22.22 0.21 -0.43 16 15 C -0.24 -9.57 10.05 22.46 0.23 -9.34 16 16 C -0.06 -2.39 10.02 22.22 0.22 -2.17 16 17 C -0.22 -10.59 7.68 22.73 0.17 -10.41 16 18 C 0.15 7.67 5.14 -21.29 -0.11 7.56 16 19 C -0.56 -27.08 5.81 23.46 0.14 -26.94 16 20 H 0.11 5.18 4.75 -2.91 -0.01 5.16 16 21 C 0.02 0.93 5.23 85.26 0.45 1.38 16 22 N -0.83 -40.86 12.76 21.83 0.28 -40.58 16 23 Si 1.08 39.39 29.38 68.60 2.02 41.41 16 24 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 25 H -0.24 -7.52 6.92 99.48 0.69 -6.83 16 26 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 2.44 5.48 -2.39 -0.01 2.42 16 29 H 0.09 2.31 7.09 -2.39 -0.02 2.29 16 30 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 31 H 0.10 3.98 3.72 -2.39 -0.01 3.97 16 32 H 0.38 9.22 5.96 -74.06 -0.44 8.78 16 33 H 0.09 3.27 4.86 -2.39 -0.01 3.25 16 34 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.09 2.13 7.95 -2.39 -0.02 2.12 16 40 H 0.08 2.02 7.49 -2.39 -0.02 2.01 16 41 H 0.13 4.92 7.33 -2.91 -0.02 4.90 16 42 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 44 H 0.10 4.86 7.05 -2.91 -0.02 4.83 16 45 H 0.29 14.72 5.99 -92.71 -0.55 14.16 16 Total: -1.00 -59.66 350.79 -0.24 -59.90 By element: Atomic # 1 Polarization: 50.09 SS G_CDS: 0.78 Total: 50.87 kcal Atomic # 6 Polarization: -84.04 SS G_CDS: 3.81 Total: -80.23 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -1.25 Total: -77.33 kcal Atomic # 8 Polarization: -103.97 SS G_CDS: -5.33 Total: -109.30 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.02 Total: 41.41 kcal Atomic # 16 Polarization: 114.95 SS G_CDS: -0.27 Total: 114.68 kcal Total: -59.66 -0.24 -59.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.388 kcal (2) G-P(sol) polarization free energy of solvation -59.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds