Wall clock time and date at job start Tue Mar 31 2020 23:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99912 * 2 1 4 4 O 1.21555 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.47851 * 119.99825 * 179.97438 * 3 2 1 6 6 C 1.39575 * 120.13890 * 180.02562 * 5 3 2 7 7 C 1.37962 * 119.84798 * 180.02562 * 6 5 3 8 8 C 1.38356 * 120.14906 * 0.02562 * 7 6 5 9 9 C 1.50693 * 119.85874 * 179.97438 * 8 7 6 10 10 O 1.45197 * 109.47129 * 89.99651 * 9 8 7 11 11 C 1.34713 * 117.00089 * 180.02562 * 10 9 8 12 12 O 1.21467 * 119.99530 * 0.02562 * 11 10 9 13 13 C 1.47761 * 119.99915 * 180.02562 * 11 10 9 14 14 C 1.39964 * 120.03287 * 359.95596 * 13 11 10 15 15 C 1.38318 * 120.35273 * 179.97438 * 14 13 11 16 16 C 1.37756 * 120.42165 * 0.05008 * 15 14 13 17 17 C 1.40756 * 120.05025 * 359.97210 * 16 15 14 18 18 C 1.41437 * 120.17935 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99868 * 150.17573 * 18 17 16 20 20 C 1.39939 * 119.99658 * 330.18336 * 18 17 16 21 21 N 1.30819 * 119.99876 * 161.73226 * 20 18 17 22 22 Si 1.86802 * 119.99860 * 341.72131 * 20 18 17 23 23 H 1.48500 * 109.46814 * 95.42188 * 22 20 18 24 24 H 1.48493 * 109.47000 * 215.41635 * 22 20 18 25 25 H 1.48493 * 109.47298 * 335.41781 * 22 20 18 26 26 C 1.39050 * 120.02919 * 179.97438 * 13 11 10 27 27 C 1.38364 * 120.28737 * 0.23020 * 8 7 6 28 28 C 1.37956 * 120.14540 * 359.49177 * 27 8 7 29 29 H 1.09005 * 109.46902 * 60.00023 * 1 2 3 30 30 H 1.08996 * 109.46722 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47090 * 299.99649 * 1 2 3 32 32 H 0.97001 * 120.00036 * 180.02562 * 2 1 3 33 33 H 1.07997 * 120.07844 * 0.02562 * 6 5 3 34 34 H 1.07999 * 119.92684 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.46784 * 330.00037 * 9 8 7 36 36 H 1.09000 * 109.47439 * 210.00380 * 9 8 7 37 37 H 1.08002 * 119.82441 * 0.04367 * 14 13 11 38 38 H 1.08004 * 119.78815 * 180.02562 * 15 14 13 39 39 H 1.07997 * 119.97679 * 180.02562 * 16 15 14 40 40 H 0.97007 * 120.00229 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.20748 * 0.25324 * 26 13 11 42 42 H 1.08007 * 119.92508 * 179.74120 * 27 8 7 43 43 H 1.08008 * 120.07183 * 180.25237 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6174 1.1672 0.0006 6 6 4.3182 2.3742 0.0011 7 6 5.6978 2.3672 0.0011 8 6 6.3866 1.1673 0.0000 9 6 7.8935 1.1673 -0.0005 10 8 8.3781 1.1664 1.3682 11 6 9.7136 1.1668 1.5442 12 8 10.4531 1.1683 0.5806 13 6 10.2789 1.1654 2.9094 14 6 9.4273 1.1646 4.0202 15 6 9.9493 1.1628 5.3011 16 6 11.3126 1.1628 5.4988 17 6 12.1850 1.1640 4.3942 18 6 13.5852 1.1635 4.5940 19 1 14.2342 0.6991 3.8663 20 6 14.1294 1.7645 5.7345 21 7 15.3470 1.4698 6.1113 22 14 13.1172 2.9877 6.7188 23 1 12.4551 2.2868 7.8482 24 1 14.0063 4.0519 7.2498 25 1 12.0859 3.5965 5.8410 26 6 11.6574 1.1653 3.0918 27 6 5.6978 -0.0327 -0.0058 28 6 4.3183 -0.0397 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 1.9500 -0.8401 -0.0004 33 1 3.7818 3.3116 0.0015 34 1 6.2414 3.3005 0.0011 35 1 8.2566 2.0576 -0.5139 36 1 8.2567 0.2777 -0.5152 37 1 8.3569 1.1643 3.8764 38 1 9.2838 1.1618 6.1517 39 1 11.7124 1.1609 6.5020 40 1 15.7244 1.8867 6.9018 41 1 12.3185 1.1703 2.2379 42 1 6.2414 -0.9660 -0.0109 43 1 3.7818 -0.9772 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731373778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:20 Heat of formation + Delta-G solvation = -78.354285 kcal Electronic energy + Delta-G solvation = -26829.409521 eV Core-core repulsion = 22804.118207 eV Total energy + Delta-G solvation = -4025.291314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62994 -40.05415 -38.76828 -37.68260 -36.05449 -35.11625 -33.76207 -32.63270 -31.36558 -30.81670 -30.17178 -28.22367 -26.36370 -25.29418 -23.69278 -23.00721 -22.44219 -20.81739 -20.69159 -20.42383 -18.67908 -18.03555 -16.93901 -16.71874 -16.40110 -16.01611 -15.84845 -15.62365 -15.30542 -14.94296 -14.89480 -14.72636 -13.97609 -13.86827 -13.70441 -13.57478 -13.26131 -12.95589 -12.84057 -12.77277 -12.74014 -12.50860 -12.09013 -11.79323 -11.67869 -11.45338 -11.13454 -10.86576 -10.64616 -10.53385 -10.38948 -10.18705 -9.94721 -9.74696 -9.64480 -9.35015 -9.31425 -9.17846 -8.02121 -7.84478 -7.05629 -4.61383 0.36325 1.02004 1.62194 2.37052 2.45267 2.74626 3.01466 3.04580 3.13648 3.18678 3.30917 3.61173 3.88328 4.21248 4.34235 4.38970 4.48217 4.58428 4.75982 4.90676 4.96372 5.05594 5.16665 5.22866 5.26006 5.33201 5.39594 5.50101 5.64345 5.84514 5.85515 5.90086 5.96402 6.09889 6.18002 6.26822 6.47658 6.55943 6.58715 6.63473 6.89175 6.99651 7.12028 7.33593 7.42914 7.66174 7.76843 7.82449 8.20726 8.22447 8.44156 8.64492 9.96389 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.001934 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.488798 B =14476.274968 C =15032.542757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.535 6.535 5 C -0.133 4.133 6 C -0.061 4.061 7 C -0.101 4.101 8 C -0.061 4.061 9 C 0.101 3.899 10 O -0.347 6.347 11 C 0.513 3.487 12 O -0.518 6.518 13 C -0.097 4.097 14 C -0.191 4.191 15 C -0.089 4.089 16 C -0.212 4.212 17 C 0.079 3.921 18 C -0.443 4.443 19 H 0.094 0.906 20 C 0.084 3.916 21 N -0.802 5.802 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.243 1.243 26 C -0.133 4.133 27 C -0.102 4.102 28 C -0.089 4.089 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.402 0.598 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.287 0.713 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.899 -3.620 -9.950 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.347 3.653 4 O -0.413 6.413 5 C -0.137 4.137 6 C -0.080 4.080 7 C -0.119 4.119 8 C -0.062 4.062 9 C 0.027 3.973 10 O -0.265 6.265 11 C 0.360 3.640 12 O -0.408 6.408 13 C -0.098 4.098 14 C -0.211 4.211 15 C -0.107 4.107 16 C -0.231 4.231 17 C 0.076 3.924 18 C -0.471 4.471 19 H 0.112 0.888 20 C -0.136 4.136 21 N -0.425 5.425 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.215 1.215 25 H -0.167 1.167 26 C -0.153 4.153 27 C -0.120 4.120 28 C -0.108 4.108 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.136 0.864 42 H 0.152 0.848 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.903 -2.863 -10.128 25.206 hybrid contribution -0.010 -0.012 0.436 0.436 sum -22.913 -2.875 -9.692 25.045 Atomic orbital electron populations 1.21569 0.79088 1.02428 1.02573 1.45718 1.07996 1.08676 1.76117 1.18348 0.87315 0.83722 0.75935 1.90782 1.69959 1.31160 1.49368 1.19927 0.92481 0.94724 1.06520 1.21263 0.93664 0.97809 0.95217 1.21146 0.93859 0.98109 0.98822 1.19819 0.94125 0.93694 0.98536 1.21769 0.89498 1.03724 0.82295 1.86673 1.25101 1.84831 1.29869 1.21843 0.79445 0.71767 0.90898 1.90772 1.60247 1.46956 1.42779 1.18749 0.94113 1.09017 0.87899 1.20613 0.97819 1.11014 0.91643 1.20593 0.94883 0.99456 0.95797 1.21275 0.93244 1.10442 0.98138 1.17645 0.93796 0.90559 0.90439 1.19485 0.90828 1.31409 1.05379 0.88773 1.26156 0.95189 0.96308 0.95943 1.69682 1.15580 1.35237 1.22018 0.86339 0.80083 0.80000 0.80102 1.19441 1.21508 1.16653 1.21276 0.91763 1.04860 0.97371 1.21056 0.93837 0.98037 0.99061 1.21222 0.94350 0.96813 0.98390 0.92039 0.90446 0.91976 0.76272 0.84316 0.84733 0.90096 0.90119 0.87250 0.87916 0.87646 0.90235 0.86449 0.84847 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.73 -4.85 5.66 -68.05 -0.39 -5.24 16 3 C 0.56 5.72 7.77 -12.33 -0.10 5.62 16 4 O -0.54 -7.39 16.35 5.32 0.09 -7.30 16 5 C -0.13 -1.28 5.87 -104.97 -0.62 -1.90 16 6 C -0.06 -0.62 9.60 -39.18 -0.38 -0.99 16 7 C -0.10 -1.02 9.68 -39.64 -0.38 -1.40 16 8 C -0.06 -0.65 5.53 -104.54 -0.58 -1.23 16 9 C 0.10 1.25 5.59 36.00 0.20 1.45 16 10 O -0.35 -5.61 9.44 -40.53 -0.38 -6.00 16 11 C 0.51 9.93 7.90 34.62 0.27 10.20 16 12 O -0.52 -10.81 16.12 -19.24 -0.31 -11.12 16 13 C -0.10 -2.05 5.87 -105.06 -0.62 -2.67 16 14 C -0.19 -3.81 9.62 -38.91 -0.37 -4.19 16 15 C -0.09 -1.81 10.01 -39.73 -0.40 -2.21 16 16 C -0.21 -4.83 7.17 -38.81 -0.28 -5.11 16 17 C 0.08 1.93 5.10 -106.87 -0.55 1.38 16 18 C -0.44 -11.60 9.57 -37.73 -0.36 -11.96 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.12 5.40 -17.35 -0.09 2.02 16 21 N -0.80 -20.67 13.93 55.55 0.77 -19.90 16 22 Si 0.91 19.89 24.52 -169.99 -4.17 15.72 16 23 H -0.27 -5.63 6.71 56.52 0.38 -5.26 16 24 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.24 -5.46 6.86 56.52 0.39 -5.07 16 26 C -0.13 -3.10 9.34 -38.42 -0.36 -3.46 16 27 C -0.10 -0.91 9.68 -39.64 -0.38 -1.29 16 28 C -0.09 -0.69 9.54 -39.19 -0.37 -1.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 1.52 6.86 -40.82 -0.28 1.24 16 33 H 0.14 1.37 7.65 -52.49 -0.40 0.97 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.08 0.95 8.08 -51.93 -0.42 0.54 16 36 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.11 1.94 7.59 -52.49 -0.40 1.54 16 38 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.11 2.37 4.72 -52.49 -0.25 2.13 16 40 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 41 H 0.12 2.73 7.64 -52.49 -0.40 2.33 16 42 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.13 0.55 6.41 -52.48 -0.34 0.21 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -31.12 372.61 -8.52 -39.64 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.03 Total: 4.25 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -4.72 Total: -15.67 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.39 Total: -25.14 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.61 Total: -24.42 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.17 Total: 15.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.12 -8.52 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731373778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.716 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds