Wall clock time and date at job start Tue Mar 31 2020 23:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99912 * 2 1 4 4 O 1.21555 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.47851 * 119.99825 * 179.97438 * 3 2 1 6 6 C 1.39575 * 120.13890 * 180.02562 * 5 3 2 7 7 C 1.37962 * 119.84798 * 180.02562 * 6 5 3 8 8 C 1.38356 * 120.14906 * 0.02562 * 7 6 5 9 9 C 1.50693 * 119.85874 * 179.97438 * 8 7 6 10 10 O 1.45197 * 109.47129 * 89.99651 * 9 8 7 11 11 C 1.34713 * 117.00089 * 180.02562 * 10 9 8 12 12 O 1.21467 * 119.99530 * 0.02562 * 11 10 9 13 13 C 1.47761 * 119.99915 * 180.02562 * 11 10 9 14 14 C 1.39964 * 120.03287 * 359.95596 * 13 11 10 15 15 C 1.38318 * 120.35273 * 179.97438 * 14 13 11 16 16 C 1.37756 * 120.42165 * 0.05008 * 15 14 13 17 17 C 1.40756 * 120.05025 * 359.97210 * 16 15 14 18 18 C 1.41437 * 120.17935 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99868 * 150.17573 * 18 17 16 20 20 C 1.39939 * 119.99658 * 330.18336 * 18 17 16 21 21 N 1.30819 * 119.99876 * 161.73226 * 20 18 17 22 22 Si 1.86802 * 119.99860 * 341.72131 * 20 18 17 23 23 H 1.48500 * 109.46814 * 95.42188 * 22 20 18 24 24 H 1.48493 * 109.47000 * 215.41635 * 22 20 18 25 25 H 1.48493 * 109.47298 * 335.41781 * 22 20 18 26 26 C 1.39050 * 120.02919 * 179.97438 * 13 11 10 27 27 C 1.38364 * 120.28737 * 0.23020 * 8 7 6 28 28 C 1.37956 * 120.14540 * 359.49177 * 27 8 7 29 29 H 1.09005 * 109.46902 * 60.00023 * 1 2 3 30 30 H 1.08996 * 109.46722 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47090 * 299.99649 * 1 2 3 32 32 H 0.97001 * 120.00036 * 180.02562 * 2 1 3 33 33 H 1.07997 * 120.07844 * 0.02562 * 6 5 3 34 34 H 1.07999 * 119.92684 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.46784 * 330.00037 * 9 8 7 36 36 H 1.09000 * 109.47439 * 210.00380 * 9 8 7 37 37 H 1.08002 * 119.82441 * 0.04367 * 14 13 11 38 38 H 1.08004 * 119.78815 * 180.02562 * 15 14 13 39 39 H 1.07997 * 119.97679 * 180.02562 * 16 15 14 40 40 H 0.97007 * 120.00229 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.20748 * 0.25324 * 26 13 11 42 42 H 1.08007 * 119.92508 * 179.74120 * 27 8 7 43 43 H 1.08008 * 120.07183 * 180.25237 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6174 1.1672 0.0006 6 6 4.3182 2.3742 0.0011 7 6 5.6978 2.3672 0.0011 8 6 6.3866 1.1673 0.0000 9 6 7.8935 1.1673 -0.0005 10 8 8.3781 1.1664 1.3682 11 6 9.7136 1.1668 1.5442 12 8 10.4531 1.1683 0.5806 13 6 10.2789 1.1654 2.9094 14 6 9.4273 1.1646 4.0202 15 6 9.9493 1.1628 5.3011 16 6 11.3126 1.1628 5.4988 17 6 12.1850 1.1640 4.3942 18 6 13.5852 1.1635 4.5940 19 1 14.2342 0.6991 3.8663 20 6 14.1294 1.7645 5.7345 21 7 15.3470 1.4698 6.1113 22 14 13.1172 2.9877 6.7188 23 1 12.4551 2.2868 7.8482 24 1 14.0063 4.0519 7.2498 25 1 12.0859 3.5965 5.8410 26 6 11.6574 1.1653 3.0918 27 6 5.6978 -0.0327 -0.0058 28 6 4.3183 -0.0397 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 1.9500 -0.8401 -0.0004 33 1 3.7818 3.3116 0.0015 34 1 6.2414 3.3005 0.0011 35 1 8.2566 2.0576 -0.5139 36 1 8.2567 0.2777 -0.5152 37 1 8.3569 1.1643 3.8764 38 1 9.2838 1.1618 6.1517 39 1 11.7124 1.1609 6.5020 40 1 15.7244 1.8867 6.9018 41 1 12.3185 1.1703 2.2379 42 1 6.2414 -0.9660 -0.0109 43 1 3.7818 -0.9772 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731373778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:19 Heat of formation + Delta-G solvation = -96.493804 kcal Electronic energy + Delta-G solvation = -26830.196110 eV Core-core repulsion = 22804.118207 eV Total energy + Delta-G solvation = -4026.077902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64850 -41.20137 -39.70271 -39.25933 -37.45005 -35.79370 -35.59670 -33.52307 -32.54518 -32.05755 -31.87376 -29.02197 -27.35416 -26.87484 -25.13703 -23.73845 -23.30402 -22.54327 -21.99449 -21.42176 -19.72953 -19.33755 -18.37529 -17.99217 -17.64507 -17.29518 -17.04494 -16.49952 -16.31561 -16.16643 -15.92932 -15.75651 -15.59721 -14.95147 -14.66408 -14.59431 -14.40678 -14.22892 -14.15186 -13.95483 -13.82084 -13.43567 -13.37230 -13.11406 -12.87466 -12.76101 -12.62422 -12.35919 -12.18473 -11.83522 -11.71927 -11.64914 -11.50003 -11.19016 -11.06832 -10.32264 -10.03582 -9.92854 -9.73580 -9.64505 -8.92138 -6.56230 -0.40740 -0.05408 0.33145 0.70978 1.26492 1.41488 1.45250 1.47263 1.65549 1.95095 2.11193 2.16635 2.58675 2.81775 3.38921 3.43507 3.66489 3.73582 3.87352 3.95340 4.08594 4.21591 4.25738 4.38716 4.42541 4.45846 4.50851 4.57901 4.61744 4.70873 4.84300 4.86236 4.94605 4.97202 5.08799 5.14375 5.22548 5.28407 5.33636 5.36623 5.43723 5.61578 5.68697 5.77251 5.81300 6.07269 6.27388 6.44672 6.60298 6.71031 6.74779 7.11772 8.16354 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.001934 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.488798 B =14476.274968 C =15032.542757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.553 3.447 4 O -0.581 6.581 5 C -0.140 4.140 6 C -0.074 4.074 7 C -0.106 4.106 8 C -0.074 4.074 9 C 0.098 3.902 10 O -0.342 6.342 11 C 0.521 3.479 12 O -0.539 6.539 13 C -0.104 4.104 14 C -0.164 4.164 15 C -0.087 4.087 16 C -0.214 4.214 17 C 0.063 3.937 18 C -0.485 4.485 19 H 0.055 0.945 20 C 0.047 3.953 21 N -0.845 5.845 22 Si 0.962 3.038 23 H -0.246 1.246 24 H -0.277 1.277 25 H -0.252 1.252 26 C -0.156 4.156 27 C -0.102 4.102 28 C -0.076 4.076 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.051 0.949 32 H 0.418 0.582 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.296 0.704 41 H 0.101 0.899 42 H 0.153 0.847 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.780 -4.656 -9.257 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.341 3.659 4 O -0.462 6.462 5 C -0.143 4.143 6 C -0.093 4.093 7 C -0.124 4.124 8 C -0.075 4.075 9 C 0.025 3.975 10 O -0.258 6.258 11 C 0.368 3.632 12 O -0.431 6.431 13 C -0.105 4.105 14 C -0.183 4.183 15 C -0.105 4.105 16 C -0.233 4.233 17 C 0.061 3.939 18 C -0.514 4.514 19 H 0.073 0.927 20 C -0.168 4.168 21 N -0.471 5.471 22 Si 0.784 3.216 23 H -0.171 1.171 24 H -0.204 1.204 25 H -0.175 1.175 26 C -0.176 4.176 27 C -0.119 4.119 28 C -0.094 4.094 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.070 0.930 32 H 0.256 0.744 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.171 0.829 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -26.806 -3.956 -9.440 28.694 hybrid contribution 0.901 0.208 0.042 0.926 sum -25.905 -3.749 -9.398 27.811 Atomic orbital electron populations 1.21739 0.78124 1.04619 1.01654 1.45669 1.08705 1.08339 1.74131 1.18542 0.87637 0.84039 0.75639 1.90761 1.70755 1.32912 1.51820 1.20052 0.92362 0.95340 1.06549 1.21304 0.93795 0.98196 0.96027 1.21212 0.93857 0.98457 0.98887 1.19759 0.92864 0.94628 1.00226 1.22052 0.90765 1.04467 0.80263 1.86622 1.22744 1.83995 1.32474 1.21453 0.80484 0.71435 0.89834 1.90768 1.61184 1.47884 1.43272 1.18965 0.93475 1.08237 0.89856 1.21084 0.99278 1.07031 0.90922 1.21061 0.94234 0.97705 0.97481 1.21473 0.94393 1.09799 0.97656 1.17735 0.93363 0.91154 0.91657 1.19431 0.91660 1.34313 1.06005 0.92685 1.26852 0.96147 0.97250 0.96516 1.69712 1.17063 1.36945 1.23335 0.85538 0.78751 0.78148 0.79130 1.17108 1.20368 1.17522 1.21218 0.93022 1.06677 0.96647 1.21331 0.94416 0.98113 0.98082 1.21553 0.93985 0.97537 0.96344 0.92895 0.86678 0.93041 0.74358 0.84965 0.84225 0.89849 0.89091 0.83865 0.83515 0.87233 0.89375 0.88126 0.82916 0.81610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.70 127.77 1.37 2.04 16 2 N -0.72 -7.44 5.66 -487.47 -2.76 -10.20 16 3 C 0.55 10.42 7.77 86.79 0.67 11.10 16 4 O -0.58 -15.94 16.35 -3.89 -0.06 -16.00 16 5 C -0.14 -2.38 5.87 -20.09 -0.12 -2.50 16 6 C -0.07 -1.43 9.60 22.53 0.22 -1.21 16 7 C -0.11 -1.98 9.68 22.23 0.22 -1.76 16 8 C -0.07 -1.39 5.53 -19.81 -0.11 -1.49 16 9 C 0.10 2.20 5.59 71.23 0.40 2.60 16 10 O -0.34 -10.13 9.44 -56.22 -0.53 -10.66 16 11 C 0.52 19.38 7.90 70.34 0.56 19.94 16 12 O -0.54 -22.39 16.12 19.94 0.32 -22.07 16 13 C -0.10 -4.27 5.87 -20.15 -0.12 -4.39 16 14 C -0.16 -5.88 9.62 22.71 0.22 -5.66 16 15 C -0.09 -3.17 10.01 22.17 0.22 -2.95 16 16 C -0.21 -9.39 7.17 22.77 0.16 -9.22 16 17 C 0.06 3.17 5.10 -21.32 -0.11 3.06 16 18 C -0.48 -26.94 9.57 23.47 0.22 -26.71 16 19 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 20 C 0.05 2.48 5.40 85.26 0.46 2.94 16 21 N -0.84 -45.43 13.93 21.82 0.30 -45.13 16 22 Si 0.96 40.61 24.52 68.60 1.68 42.29 16 23 H -0.25 -9.46 6.71 99.48 0.67 -8.79 16 24 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.25 -10.83 6.86 99.48 0.68 -10.15 16 26 C -0.16 -7.44 9.34 23.02 0.21 -7.22 16 27 C -0.10 -1.44 9.68 22.23 0.22 -1.22 16 28 C -0.08 -0.88 9.54 22.52 0.21 -0.66 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.42 1.41 6.86 -92.71 -0.64 0.77 16 33 H 0.13 2.65 7.65 -2.91 -0.02 2.62 16 34 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16 37 H 0.14 4.25 7.59 -2.91 -0.02 4.22 16 38 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.11 4.69 4.72 -2.91 -0.01 4.68 16 40 H 0.30 14.18 8.30 -92.70 -0.77 13.41 16 41 H 0.10 5.00 7.64 -2.91 -0.02 4.98 16 42 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.17 0.54 6.41 -2.91 -0.02 0.52 16 Total: -1.00 -71.36 372.61 4.22 -67.14 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.36 Total: 17.96 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.91 Total: -23.34 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -2.46 Total: -55.33 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.27 Total: -48.73 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.68 Total: 42.29 kcal Total: -71.36 4.22 -67.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731373778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.351 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds