Wall clock time and date at job start Tue Mar 31 2020 23:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 119.99946 * 2 1 4 4 O 1.21555 * 120.00144 * 359.97438 * 3 2 1 5 5 C 1.47844 * 119.99858 * 179.97438 * 3 2 1 6 6 C 1.39574 * 120.14527 * 180.02562 * 5 3 2 7 7 C 1.37954 * 119.85515 * 180.02562 * 6 5 3 8 8 C 1.38356 * 120.14751 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.85705 * 179.97438 * 8 7 6 10 10 O 1.45201 * 109.46944 * 89.99689 * 9 8 7 11 11 C 1.34804 * 116.99925 * 180.02562 * 10 9 8 12 12 O 1.21526 * 120.00158 * 359.97438 * 11 10 9 13 13 C 1.47288 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.39296 * 120.28603 * 354.83939 * 13 11 10 15 15 C 1.38205 * 120.08627 * 180.27692 * 14 13 11 16 16 C 1.38842 * 120.68093 * 359.73704 * 15 14 13 17 17 C 1.37598 * 120.58249 * 0.02562 * 16 15 14 18 18 C 1.40703 * 119.88779 * 0.02562 * 17 16 15 19 19 C 1.40861 * 120.33362 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99855 * 145.73459 * 19 18 17 21 21 C 1.40294 * 120.00053 * 325.74709 * 19 18 17 22 22 N 1.30615 * 119.99944 * 339.67310 * 21 19 18 23 23 Si 1.86800 * 120.00191 * 159.68073 * 21 19 18 24 24 H 1.48501 * 109.47051 * 269.99428 * 23 21 19 25 25 H 1.48500 * 109.47071 * 29.99448 * 23 21 19 26 26 H 1.48504 * 109.46997 * 149.99554 * 23 21 19 27 27 C 1.38367 * 120.28654 * 0.23115 * 8 7 6 28 28 C 1.37954 * 120.14572 * 359.49048 * 27 8 7 29 29 H 1.09000 * 109.47032 * 60.00517 * 1 2 3 30 30 H 1.08998 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47986 * 300.00280 * 1 2 3 32 32 H 0.96998 * 120.00146 * 179.97438 * 2 1 3 33 33 H 1.08001 * 120.07288 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.92548 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.46912 * 330.00096 * 9 8 7 36 36 H 1.09000 * 109.47278 * 209.99608 * 9 8 7 37 37 H 1.08000 * 119.95653 * 0.02562 * 14 13 11 38 38 H 1.07997 * 119.65882 * 179.75950 * 15 14 13 39 39 H 1.07994 * 119.70815 * 180.02562 * 16 15 14 40 40 H 1.07997 * 120.05357 * 180.02562 * 17 16 15 41 41 H 0.97001 * 119.99911 * 355.30114 * 22 21 19 42 42 H 1.08004 * 119.92138 * 179.74623 * 27 8 7 43 43 H 1.08003 * 120.07103 * 180.25102 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6173 1.1672 0.0006 6 6 4.3182 2.3742 0.0011 7 6 5.6978 2.3672 0.0011 8 6 6.3865 1.1672 0.0000 9 6 7.8935 1.1672 -0.0005 10 8 8.3780 1.1664 1.3683 11 6 9.7145 1.1668 1.5444 12 8 10.4544 1.1673 0.5804 13 6 10.2780 1.1654 2.9052 14 6 9.4399 1.2718 4.0127 15 6 9.9735 1.2759 5.2876 16 6 11.3441 1.1690 5.4822 17 6 12.1971 1.0576 4.4083 18 6 11.6800 1.0520 3.0998 19 6 12.5447 0.9389 1.9936 20 1 12.2257 0.4039 1.1113 21 6 13.8204 1.5211 2.0380 22 7 14.0725 2.4773 2.8913 23 14 15.1583 0.9288 0.8768 24 1 15.9138 -0.1786 1.5158 25 1 14.5408 0.4440 -0.3837 26 1 16.0841 2.0501 0.5752 27 6 5.6977 -0.0328 -0.0059 28 6 4.3182 -0.0398 -0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 1.9500 -0.8400 0.0004 33 1 3.7818 3.3115 0.0007 34 1 6.2413 3.3004 0.0011 35 1 8.2566 2.0575 -0.5139 36 1 8.2567 0.2775 -0.5150 37 1 8.3720 1.3554 3.8748 38 1 9.3177 1.3627 6.1412 39 1 11.7442 1.1734 6.4853 40 1 13.2617 0.9746 4.5696 41 1 13.3606 2.8319 3.4467 42 1 6.2413 -0.9660 -0.0108 43 1 3.7818 -0.9772 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731373910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:24 Heat of formation + Delta-G solvation = -83.244159 kcal Electronic energy + Delta-G solvation = -27357.558192 eV Core-core repulsion = 23332.054837 eV Total energy + Delta-G solvation = -4025.503355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48719 -39.57797 -38.60730 -37.47158 -35.44959 -35.03786 -34.02717 -32.41715 -31.23091 -30.23393 -29.50331 -28.04429 -26.20786 -25.32357 -23.16235 -22.80436 -22.18891 -21.10976 -20.58301 -19.90558 -18.56937 -18.09410 -16.76369 -16.59481 -16.26239 -15.67829 -15.54520 -15.23197 -15.12992 -14.74873 -14.66515 -14.21269 -13.99525 -13.83930 -13.57222 -13.48033 -13.10500 -12.83848 -12.69675 -12.61434 -12.41889 -12.18669 -11.87343 -11.53346 -11.30255 -11.23845 -11.00608 -10.79961 -10.46438 -10.29917 -10.27519 -10.06819 -9.81316 -9.57619 -9.22538 -9.20427 -9.14373 -8.85687 -7.91074 -7.73257 -7.31302 -4.62679 0.51004 1.15239 2.03724 2.51932 2.66933 2.82789 3.12514 3.23287 3.33654 3.38025 3.72553 3.85824 3.94130 4.34413 4.47617 4.50269 4.68239 4.73597 4.84397 5.08106 5.11032 5.13328 5.31495 5.38454 5.42850 5.51288 5.61221 5.78782 5.94892 5.94943 5.98402 6.01571 6.09419 6.14971 6.36059 6.41053 6.61846 6.67601 6.87134 7.07551 7.10805 7.24993 7.42075 7.50995 7.67044 7.76088 7.85103 8.00358 8.08754 8.55915 8.68283 8.94559 9.89592 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.002211 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.877467 B =12660.275973 C =13507.084239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.560 3.440 4 O -0.537 6.537 5 C -0.138 4.138 6 C -0.061 4.061 7 C -0.104 4.104 8 C -0.055 4.055 9 C 0.103 3.897 10 O -0.363 6.363 11 C 0.504 3.496 12 O -0.513 6.513 13 C -0.255 4.255 14 C -0.022 4.022 15 C -0.261 4.261 16 C -0.070 4.070 17 C -0.201 4.201 18 C 0.121 3.879 19 C -0.465 4.465 20 H 0.105 0.895 21 C 0.031 3.969 22 N -0.784 5.784 23 Si 1.073 2.927 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.104 4.104 28 C -0.089 4.089 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.300 0.700 42 H 0.133 0.867 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.541 -5.997 -5.439 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.348 3.652 4 O -0.414 6.414 5 C -0.141 4.141 6 C -0.079 4.079 7 C -0.122 4.122 8 C -0.055 4.055 9 C 0.029 3.971 10 O -0.283 6.283 11 C 0.354 3.646 12 O -0.404 6.404 13 C -0.258 4.258 14 C -0.041 4.041 15 C -0.280 4.280 16 C -0.089 4.089 17 C -0.219 4.219 18 C 0.117 3.883 19 C -0.491 4.491 20 H 0.123 0.877 21 C -0.191 4.191 22 N -0.406 5.406 23 Si 0.896 3.104 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.151 0.849 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.208 -4.986 -6.125 18.030 hybrid contribution -1.498 -0.623 0.478 1.691 sum -17.706 -5.609 -5.647 19.413 Atomic orbital electron populations 1.21559 0.79177 1.02363 1.02531 1.45717 1.07938 1.08710 1.76216 1.18356 0.87348 0.83671 0.75823 1.90775 1.69997 1.31173 1.49467 1.19888 0.92365 0.94740 1.07084 1.21247 0.93678 0.97723 0.95298 1.21151 0.93790 0.98199 0.99021 1.19921 0.94592 0.93534 0.97492 1.21603 0.88888 1.03270 0.83354 1.86660 1.26510 1.86236 1.28866 1.21358 0.78579 0.73672 0.90944 1.90748 1.59036 1.47915 1.42692 1.18658 0.94118 1.25246 0.87738 1.20911 0.97611 0.93259 0.92296 1.20338 0.94714 1.17293 0.95637 1.20813 0.93679 0.97112 0.97253 1.21201 0.98728 1.09937 0.92075 1.17469 0.90040 0.87836 0.92955 1.21230 0.98313 1.27294 1.02233 0.87738 1.27327 1.00045 0.93537 0.98234 1.70362 1.38979 1.16703 1.14595 0.83510 0.74347 0.76978 0.75562 1.19872 1.19692 1.19967 1.21057 0.93764 0.98113 0.99283 1.21205 0.94361 0.96718 0.98499 0.92073 0.90495 0.92026 0.76280 0.84431 0.84800 0.90595 0.90637 0.87803 0.88554 0.88593 0.87296 0.88601 0.84933 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.70 59.85 0.64 1.17 16 2 N -0.73 -5.57 5.66 -68.05 -0.39 -5.95 16 3 C 0.56 6.34 7.77 -12.33 -0.10 6.25 16 4 O -0.54 -7.94 16.35 5.32 0.09 -7.86 16 5 C -0.14 -1.51 5.87 -104.97 -0.62 -2.13 16 6 C -0.06 -0.71 9.60 -39.19 -0.38 -1.08 16 7 C -0.10 -1.25 9.68 -39.64 -0.38 -1.63 16 8 C -0.06 -0.70 5.53 -104.53 -0.58 -1.28 16 9 C 0.10 1.59 5.59 36.00 0.20 1.79 16 10 O -0.36 -7.08 9.47 -40.78 -0.39 -7.47 16 11 C 0.50 11.76 7.85 34.41 0.27 12.03 16 12 O -0.51 -13.00 13.38 -19.28 -0.26 -13.26 16 13 C -0.25 -6.24 5.92 -104.39 -0.62 -6.85 16 14 C -0.02 -0.49 9.60 -39.20 -0.38 -0.87 16 15 C -0.26 -5.46 10.03 -39.37 -0.39 -5.86 16 16 C -0.07 -1.51 10.01 -39.59 -0.40 -1.90 16 17 C -0.20 -4.85 7.90 -38.88 -0.31 -5.15 16 18 C 0.12 3.15 5.16 -106.54 -0.55 2.60 16 19 C -0.46 -12.31 7.62 -37.82 -0.29 -12.59 16 20 H 0.10 2.87 5.99 -52.49 -0.31 2.56 16 21 C 0.03 0.79 5.01 -17.30 -0.09 0.70 16 22 N -0.78 -20.28 12.60 55.57 0.70 -19.58 16 23 Si 1.07 21.60 29.98 -169.99 -5.10 16.51 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.10 -1.13 9.68 -39.64 -0.38 -1.51 16 28 C -0.09 -0.82 9.54 -39.19 -0.37 -1.19 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.40 1.92 6.86 -40.82 -0.28 1.64 16 33 H 0.14 1.55 7.65 -52.49 -0.40 1.15 16 34 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 35 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 36 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.10 2.06 7.61 -52.49 -0.40 1.66 16 38 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.11 2.66 6.99 -52.49 -0.37 2.29 16 41 H 0.30 7.96 6.62 -40.82 -0.27 7.69 16 42 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.13 0.71 6.41 -52.48 -0.34 0.38 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -31.78 372.77 -9.40 -41.18 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.96 Total: 8.34 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -4.71 Total: -17.53 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.31 Total: -25.53 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.56 Total: -28.59 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.10 Total: 16.51 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.78 -9.40 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731373910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.065 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds