Wall clock time and date at job start Tue Mar 31 2020 23:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 119.99946 * 2 1 4 4 O 1.21555 * 120.00144 * 359.97438 * 3 2 1 5 5 C 1.47844 * 119.99858 * 179.97438 * 3 2 1 6 6 C 1.39574 * 120.14527 * 180.02562 * 5 3 2 7 7 C 1.37954 * 119.85515 * 180.02562 * 6 5 3 8 8 C 1.38356 * 120.14751 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.85705 * 179.97438 * 8 7 6 10 10 O 1.45201 * 109.46944 * 89.99689 * 9 8 7 11 11 C 1.34804 * 116.99925 * 180.02562 * 10 9 8 12 12 O 1.21526 * 120.00158 * 359.97438 * 11 10 9 13 13 C 1.47288 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.39296 * 120.28603 * 354.83939 * 13 11 10 15 15 C 1.38205 * 120.08627 * 180.27692 * 14 13 11 16 16 C 1.38842 * 120.68093 * 359.73704 * 15 14 13 17 17 C 1.37598 * 120.58249 * 0.02562 * 16 15 14 18 18 C 1.40703 * 119.88779 * 0.02562 * 17 16 15 19 19 C 1.40861 * 120.33362 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99855 * 145.73459 * 19 18 17 21 21 C 1.40294 * 120.00053 * 325.74709 * 19 18 17 22 22 N 1.30615 * 119.99944 * 339.67310 * 21 19 18 23 23 Si 1.86800 * 120.00191 * 159.68073 * 21 19 18 24 24 H 1.48501 * 109.47051 * 269.99428 * 23 21 19 25 25 H 1.48500 * 109.47071 * 29.99448 * 23 21 19 26 26 H 1.48504 * 109.46997 * 149.99554 * 23 21 19 27 27 C 1.38367 * 120.28654 * 0.23115 * 8 7 6 28 28 C 1.37954 * 120.14572 * 359.49048 * 27 8 7 29 29 H 1.09000 * 109.47032 * 60.00517 * 1 2 3 30 30 H 1.08998 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47986 * 300.00280 * 1 2 3 32 32 H 0.96998 * 120.00146 * 179.97438 * 2 1 3 33 33 H 1.08001 * 120.07288 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.92548 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.46912 * 330.00096 * 9 8 7 36 36 H 1.09000 * 109.47278 * 209.99608 * 9 8 7 37 37 H 1.08000 * 119.95653 * 0.02562 * 14 13 11 38 38 H 1.07997 * 119.65882 * 179.75950 * 15 14 13 39 39 H 1.07994 * 119.70815 * 180.02562 * 16 15 14 40 40 H 1.07997 * 120.05357 * 180.02562 * 17 16 15 41 41 H 0.97001 * 119.99911 * 355.30114 * 22 21 19 42 42 H 1.08004 * 119.92138 * 179.74623 * 27 8 7 43 43 H 1.08003 * 120.07103 * 180.25102 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6173 1.1672 0.0006 6 6 4.3182 2.3742 0.0011 7 6 5.6978 2.3672 0.0011 8 6 6.3865 1.1672 0.0000 9 6 7.8935 1.1672 -0.0005 10 8 8.3780 1.1664 1.3683 11 6 9.7145 1.1668 1.5444 12 8 10.4544 1.1673 0.5804 13 6 10.2780 1.1654 2.9052 14 6 9.4399 1.2718 4.0127 15 6 9.9735 1.2759 5.2876 16 6 11.3441 1.1690 5.4822 17 6 12.1971 1.0576 4.4083 18 6 11.6800 1.0520 3.0998 19 6 12.5447 0.9389 1.9936 20 1 12.2257 0.4039 1.1113 21 6 13.8204 1.5211 2.0380 22 7 14.0725 2.4773 2.8913 23 14 15.1583 0.9288 0.8768 24 1 15.9138 -0.1786 1.5158 25 1 14.5408 0.4440 -0.3837 26 1 16.0841 2.0501 0.5752 27 6 5.6977 -0.0328 -0.0059 28 6 4.3182 -0.0398 -0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 1.9500 -0.8400 0.0004 33 1 3.7818 3.3115 0.0007 34 1 6.2413 3.3004 0.0011 35 1 8.2566 2.0575 -0.5139 36 1 8.2567 0.2775 -0.5150 37 1 8.3720 1.3554 3.8748 38 1 9.3177 1.3627 6.1412 39 1 11.7442 1.1734 6.4853 40 1 13.2617 0.9746 4.5696 41 1 13.3606 2.8319 3.4467 42 1 6.2413 -0.9660 -0.0108 43 1 3.7818 -0.9772 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731373910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:23 Heat of formation + Delta-G solvation = -100.808744 kcal Electronic energy + Delta-G solvation = -27358.319849 eV Core-core repulsion = 23332.054837 eV Total energy + Delta-G solvation = -4026.265012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47901 -41.12175 -39.69933 -39.12522 -37.14644 -35.85786 -35.80166 -33.46977 -32.09751 -31.99083 -31.31693 -28.98258 -27.43361 -26.81814 -24.66903 -23.74509 -23.30376 -22.88454 -21.64507 -21.43577 -19.94355 -19.34941 -18.49043 -17.74843 -17.53877 -16.98390 -16.67179 -16.33057 -16.27453 -16.04568 -15.94584 -15.69767 -15.60805 -14.99836 -14.65605 -14.49725 -14.35732 -14.18931 -14.08271 -13.87078 -13.63157 -13.38243 -13.12167 -12.98552 -12.76309 -12.66554 -12.48488 -12.18759 -12.10510 -11.98147 -11.61967 -11.57380 -11.20960 -11.00126 -10.81720 -10.33090 -10.07032 -9.93795 -9.73813 -9.57968 -9.22418 -6.57216 -0.41668 0.21056 0.29742 0.86770 1.47469 1.53984 1.62187 1.77675 1.91487 2.09391 2.15068 2.28329 2.65506 2.82058 3.44832 3.46826 3.64185 3.74174 3.88488 4.06516 4.15199 4.27218 4.29325 4.37677 4.44572 4.47413 4.49159 4.61104 4.67701 4.76002 4.87439 4.93683 4.93710 5.04633 5.11962 5.22571 5.32262 5.33610 5.42897 5.46761 5.59529 5.66969 5.74137 5.80833 5.91001 6.13929 6.25347 6.42977 6.67550 6.77217 7.10008 7.15875 7.95597 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.002211 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.877467 B =12660.275973 C =13507.084239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.555 3.445 4 O -0.580 6.580 5 C -0.141 4.141 6 C -0.072 4.072 7 C -0.109 4.109 8 C -0.071 4.071 9 C 0.101 3.899 10 O -0.359 6.359 11 C 0.505 3.495 12 O -0.542 6.542 13 C -0.278 4.278 14 C -0.026 4.026 15 C -0.247 4.247 16 C -0.062 4.062 17 C -0.222 4.222 18 C 0.100 3.900 19 C -0.503 4.503 20 H 0.084 0.916 21 C 0.000 4.000 22 N -0.805 5.805 23 Si 1.118 2.882 24 H -0.253 1.253 25 H -0.272 1.272 26 H -0.268 1.268 27 C -0.104 4.104 28 C -0.073 4.073 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.051 0.949 32 H 0.418 0.582 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.285 0.715 42 H 0.150 0.850 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.555 -7.898 -4.613 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.343 3.657 4 O -0.461 6.461 5 C -0.144 4.144 6 C -0.091 4.091 7 C -0.127 4.127 8 C -0.072 4.072 9 C 0.027 3.973 10 O -0.277 6.277 11 C 0.357 3.643 12 O -0.435 6.435 13 C -0.280 4.280 14 C -0.044 4.044 15 C -0.266 4.266 16 C -0.081 4.081 17 C -0.241 4.241 18 C 0.096 3.904 19 C -0.530 4.530 20 H 0.102 0.898 21 C -0.217 4.217 22 N -0.428 5.428 23 Si 0.935 3.065 24 H -0.178 1.178 25 H -0.196 1.196 26 H -0.192 1.192 27 C -0.122 4.122 28 C -0.091 4.091 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.256 0.744 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.167 0.833 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.259 -6.934 -5.278 20.232 hybrid contribution -1.211 -0.071 0.297 1.249 sum -19.470 -7.006 -4.981 21.283 Atomic orbital electron populations 1.21747 0.78015 1.04659 1.01695 1.45663 1.08753 1.08277 1.74133 1.18469 0.87449 0.84093 0.75649 1.90757 1.70686 1.32883 1.51811 1.20047 0.92524 0.95174 1.06649 1.21291 0.93510 0.98352 0.95898 1.21176 0.94034 0.98243 0.99287 1.19791 0.92765 0.94811 0.99817 1.21849 0.90822 1.03417 0.81180 1.86608 1.24119 1.85456 1.31559 1.21304 0.79642 0.72968 0.90420 1.90728 1.60164 1.49059 1.43513 1.19044 0.94291 1.25316 0.89395 1.21207 0.98576 0.92585 0.92017 1.20842 0.94928 1.14299 0.96481 1.21227 0.93885 0.94858 0.98112 1.21198 0.98738 1.11730 0.92399 1.17843 0.91020 0.87804 0.93753 1.21182 0.99902 1.29717 1.02205 0.89784 1.28555 1.01675 0.92677 0.98836 1.70471 1.38231 1.17940 1.16109 0.82978 0.72284 0.77303 0.73911 1.17761 1.19633 1.19207 1.21299 0.94575 0.97898 0.98439 1.21547 0.93706 0.97673 0.96197 0.92852 0.86620 0.92995 0.74370 0.84746 0.84671 0.91015 0.90091 0.85471 0.84575 0.85115 0.88466 0.90228 0.83256 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.70 127.77 1.37 2.15 16 2 N -0.72 -8.77 5.66 -487.48 -2.76 -11.53 16 3 C 0.56 11.68 7.77 86.79 0.67 12.36 16 4 O -0.58 -17.03 16.35 -3.89 -0.06 -17.09 16 5 C -0.14 -2.84 5.87 -20.09 -0.12 -2.95 16 6 C -0.07 -1.64 9.60 22.52 0.22 -1.43 16 7 C -0.11 -2.60 9.68 22.23 0.22 -2.39 16 8 C -0.07 -1.76 5.53 -19.81 -0.11 -1.87 16 9 C 0.10 3.11 5.59 71.23 0.40 3.51 16 10 O -0.36 -13.95 9.47 -57.15 -0.54 -14.49 16 11 C 0.51 24.10 7.85 70.20 0.55 24.65 16 12 O -0.54 -28.57 13.38 19.75 0.26 -28.31 16 13 C -0.28 -13.73 5.92 -19.71 -0.12 -13.84 16 14 C -0.03 -1.08 9.60 22.52 0.22 -0.86 16 15 C -0.25 -9.54 10.03 22.41 0.22 -9.32 16 16 C -0.06 -2.56 10.01 22.26 0.22 -2.34 16 17 C -0.22 -10.83 7.90 22.72 0.18 -10.65 16 18 C 0.10 5.32 5.16 -21.10 -0.11 5.21 16 19 C -0.50 -27.92 7.62 23.41 0.18 -27.74 16 20 H 0.08 4.89 5.99 -2.91 -0.02 4.87 16 21 C 0.00 -0.02 5.01 85.37 0.43 0.40 16 22 N -0.80 -43.17 12.60 21.88 0.28 -42.89 16 23 Si 1.12 44.64 29.98 68.60 2.06 46.70 16 24 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 26 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 27 C -0.10 -1.99 9.68 22.23 0.22 -1.78 16 28 C -0.07 -1.10 9.54 22.52 0.21 -0.89 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.42 2.23 6.86 -92.71 -0.64 1.59 16 33 H 0.13 3.11 7.65 -2.91 -0.02 3.08 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 36 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 37 H 0.13 4.69 7.61 -2.91 -0.02 4.67 16 38 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.10 4.90 6.99 -2.91 -0.02 4.87 16 41 H 0.29 15.82 6.62 -92.71 -0.61 15.20 16 42 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.17 1.04 6.41 -2.91 -0.02 1.02 16 Total: -1.00 -72.77 372.77 4.66 -68.11 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.58 Total: 27.29 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 4.85 Total: -27.78 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -2.49 Total: -54.42 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -0.34 Total: -59.89 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.06 Total: 46.70 kcal Total: -72.77 4.66 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731373910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.702 kcal (2) G-P(sol) polarization free energy of solvation -72.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds