Wall clock time and date at job start Tue Mar 31 2020 23:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36003 * 116.99642 * 2 1 4 4 C 1.38714 * 119.98060 * 359.72694 * 3 2 1 5 5 C 1.38022 * 119.84969 * 180.36347 * 4 3 2 6 6 C 1.39034 * 120.10837 * 359.97438 * 5 4 3 7 7 C 1.38572 * 120.12226 * 359.86471 * 6 5 4 8 8 C 1.38525 * 119.60430 * 0.18487 * 7 6 5 9 9 C 1.50600 * 121.50860 * 180.34009 * 7 6 5 10 10 C 1.52849 * 110.51042 * 339.32839 * 9 7 6 11 11 C 1.53431 * 108.85535 * 51.39846 * 10 9 7 12 12 N 1.40216 * 119.07782 * 179.75378 * 6 5 4 13 13 S 1.65595 * 120.54859 * 346.58503 * 12 6 5 14 14 O 1.42097 * 104.27738 * 198.39618 * 13 12 6 15 15 O 1.42100 * 104.28056 * 326.25021 * 13 12 6 16 16 C 1.81398 * 104.45094 * 82.32593 * 13 12 6 17 17 C 1.53003 * 109.47407 * 179.97438 * 16 13 12 18 18 C 1.53004 * 109.46873 * 180.02562 * 17 16 13 19 19 C 1.50696 * 109.46635 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00587 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00119 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99356 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00395 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47061 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47079 * 120.00193 * 23 21 19 26 26 H 1.48492 * 109.47201 * 240.00242 * 23 21 19 27 27 H 1.09005 * 109.47237 * 300.00017 * 1 2 3 28 28 H 1.08997 * 109.47150 * 59.99875 * 1 2 3 29 29 H 1.08997 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.07760 * 0.34187 * 4 3 2 31 31 H 1.08003 * 119.94710 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.86435 * 179.91560 * 8 7 6 33 33 H 1.08996 * 109.26715 * 99.60193 * 9 7 6 34 34 H 1.09007 * 109.26379 * 219.06557 * 9 7 6 35 35 H 1.09003 * 109.57004 * 171.20813 * 10 9 7 36 36 H 1.08994 * 109.57445 * 291.46082 * 10 9 7 37 37 H 1.09000 * 109.79869 * 56.33975 * 11 10 9 38 38 H 1.09006 * 109.78932 * 177.19297 * 11 10 9 39 39 H 1.09007 * 109.47036 * 299.99980 * 16 13 12 40 40 H 1.09006 * 109.47306 * 59.99666 * 16 13 12 41 41 H 1.08997 * 109.46755 * 299.99682 * 17 16 13 42 42 H 1.09000 * 109.47121 * 60.00050 * 17 16 13 43 43 H 1.09004 * 109.46750 * 299.99585 * 18 17 16 44 44 H 1.08992 * 109.47686 * 59.99995 * 18 17 16 45 45 H 0.97005 * 119.99668 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2904 2.3749 -0.0057 5 6 1.9198 3.6032 -0.0133 6 6 3.3082 3.6755 -0.0147 7 6 4.0650 2.5147 -0.0056 8 6 3.4299 1.2837 0.0010 9 6 5.5705 2.5567 0.0009 10 6 6.0708 3.9080 -0.5090 11 6 5.3613 5.0247 0.2681 12 7 3.9251 4.9347 -0.0277 13 16 3.0494 6.2973 -0.3719 14 8 4.0297 7.2650 -0.7209 15 8 2.0809 5.8623 -1.3164 16 6 2.2550 6.7339 1.1993 17 6 1.4072 7.9934 1.0096 18 6 0.7378 8.3619 2.3352 19 6 -0.0977 9.6021 2.1481 20 1 -0.1467 10.0794 1.1806 21 6 -0.8005 10.1268 3.2120 22 7 -0.7412 9.5453 4.3901 23 14 -1.8356 11.6645 2.9804 24 1 -1.7343 12.1217 1.5711 25 1 -3.2532 11.3597 3.3008 26 1 -1.3426 12.7339 3.8849 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.2119 2.3194 -0.0046 31 1 1.3327 4.5098 -0.0174 32 1 4.0156 0.3764 0.0067 33 1 5.9303 2.4002 1.0177 34 1 5.9550 1.7648 -0.6420 35 1 7.1470 3.9814 -0.3529 36 1 5.8486 4.0022 -1.5719 37 1 5.5271 4.8932 1.3373 38 1 5.7434 5.9951 -0.0490 39 1 1.6174 5.9119 1.5249 40 1 3.0196 6.9212 1.9533 41 1 2.0452 8.8152 0.6844 42 1 0.6426 7.8065 0.2556 43 1 0.0999 7.5402 2.6608 44 1 1.5026 8.5489 3.0889 45 1 -1.2359 9.9142 5.1385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731672165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:44 Heat of formation + Delta-G solvation = -91.758045 kcal Electronic energy + Delta-G solvation = -27668.307205 eV Core-core repulsion = 23777.878611 eV Total energy + Delta-G solvation = -3890.428593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67478 -38.93851 -37.30795 -35.96220 -35.71678 -34.74661 -33.90855 -32.24126 -30.44581 -29.85401 -27.90173 -27.23283 -25.41105 -23.88687 -23.18826 -22.98380 -20.62710 -20.26779 -19.09916 -17.92172 -17.83090 -17.20290 -16.69690 -15.95191 -15.88037 -15.76393 -15.70458 -14.82646 -14.74580 -14.50444 -14.32193 -14.09081 -13.79104 -13.59693 -13.29724 -13.12462 -12.67213 -12.60505 -12.34576 -12.21196 -12.07591 -11.98237 -11.91241 -11.87603 -11.52795 -11.30856 -11.15228 -11.08287 -10.96598 -10.90774 -10.64450 -10.47120 -10.07364 -10.01388 -9.43187 -9.15827 -8.94860 -8.44385 -7.71629 -6.08928 -4.12224 0.20375 1.13650 1.33078 2.47296 3.13147 3.27224 3.34925 3.39643 3.52301 3.86082 4.10539 4.25068 4.39744 4.52319 4.67163 4.70085 4.73150 4.86706 4.96389 4.99290 4.99767 5.08857 5.11603 5.27344 5.28104 5.30833 5.35506 5.41416 5.48478 5.61469 5.67829 5.77899 5.79791 5.85754 5.93262 6.18081 6.22710 6.35688 6.37794 6.42299 6.69589 6.80162 7.26196 7.52941 7.61849 7.88836 8.28640 8.94126 9.52760 11.02249 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.003111 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.302874 B = 8998.881105 C =10502.298330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.320 6.320 3 C 0.099 3.901 4 C -0.168 4.168 5 C -0.127 4.127 6 C 0.152 3.848 7 C -0.078 4.078 8 C -0.124 4.124 9 C -0.075 4.075 10 C -0.131 4.131 11 C 0.103 3.897 12 N -0.941 5.941 13 S 2.587 3.413 14 O -0.951 6.951 15 O -0.947 6.947 16 C -0.606 4.606 17 C -0.105 4.105 18 C 0.031 3.969 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.201 -19.249 -7.646 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.234 6.234 3 C 0.054 3.946 4 C -0.187 4.187 5 C -0.149 4.149 6 C 0.056 3.944 7 C -0.082 4.082 8 C -0.143 4.143 9 C -0.112 4.112 10 C -0.169 4.169 11 C -0.021 4.021 12 N -0.765 5.765 13 S 2.686 3.314 14 O -0.941 6.941 15 O -0.937 6.937 16 C -0.738 4.738 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.260 -18.924 -8.349 23.550 hybrid contribution -1.070 0.825 0.723 1.532 sum 10.190 -18.099 -7.626 22.126 Atomic orbital electron populations 1.23054 0.78445 1.03774 1.01622 1.86051 1.21304 1.26754 1.89304 1.18822 0.92176 0.84153 0.99491 1.21008 1.00293 0.91292 1.06086 1.21078 0.92104 0.99509 1.02172 1.17157 0.90969 0.84546 1.01700 1.19177 0.95533 0.90584 1.02923 1.20100 0.91261 0.97369 1.05589 1.20387 0.90396 0.98101 1.02321 1.21808 1.00275 0.94042 1.00815 1.21815 0.78039 1.01612 1.00629 1.55966 1.18998 1.18994 1.82521 1.05955 0.74558 0.72639 0.78220 1.93559 1.58914 1.59069 1.82577 1.93597 1.61740 1.79868 1.58475 1.30618 1.12743 1.10148 1.20336 1.21539 0.97611 0.91396 1.03948 1.19069 0.95312 0.96757 0.89603 1.21277 1.28226 1.10731 0.96255 0.92286 1.25022 0.96724 0.97435 0.95181 1.69969 1.42335 1.40263 1.00762 0.86498 0.80022 0.82942 0.78363 1.19578 1.20920 1.20910 0.92507 0.92565 0.88398 0.84707 0.84297 0.84950 0.90112 0.90077 0.89654 0.90813 0.90396 0.87452 0.85135 0.84989 0.91441 0.91459 0.96037 0.96023 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.49 10.50 -19.75 -0.21 -3.70 16 3 C 0.10 1.18 6.68 -39.30 -0.26 0.92 16 4 C -0.17 -2.07 9.03 -39.49 -0.36 -2.42 16 5 C -0.13 -1.76 8.33 -39.37 -0.33 -2.09 16 6 C 0.15 2.01 6.23 -83.60 -0.52 1.49 16 7 C -0.08 -0.88 5.76 -104.44 -0.60 -1.48 16 8 C -0.12 -1.36 9.60 -39.37 -0.38 -1.74 16 9 C -0.08 -0.61 5.78 -28.01 -0.16 -0.77 16 10 C -0.13 -1.07 6.11 -26.59 -0.16 -1.24 16 11 C 0.10 1.04 6.47 -3.59 -0.02 1.01 16 12 N -0.94 -12.12 3.21 -58.03 -0.19 -12.31 16 13 S 2.59 39.89 4.81 -107.50 -0.52 39.37 16 14 O -0.95 -16.47 16.39 -57.54 -0.94 -17.41 16 15 O -0.95 -16.82 15.05 -57.54 -0.87 -17.68 16 16 C -0.61 -9.48 5.98 37.16 0.22 -9.26 16 17 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 18 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 19 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 23 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 28 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.14 1.39 6.30 -52.49 -0.33 1.06 16 31 H 0.14 1.99 4.59 -52.48 -0.24 1.74 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.11 1.09 6.70 -51.93 -0.35 0.74 16 39 H 0.13 1.86 7.10 -51.92 -0.37 1.50 16 40 H 0.13 1.83 8.14 -51.92 -0.42 1.41 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -34.78 372.22 -10.36 -45.14 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.70 Total: -0.34 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -2.27 Total: -29.45 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.55 Total: -37.92 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -2.02 Total: -38.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 39.89 SS G_CDS: -0.52 Total: 39.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.78 -10.36 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731672165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.616 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds