Wall clock time and date at job start Tue Mar 31 2020 23:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36003 * 116.99642 * 2 1 4 4 C 1.38714 * 119.98060 * 359.72694 * 3 2 1 5 5 C 1.38022 * 119.84969 * 180.36347 * 4 3 2 6 6 C 1.39034 * 120.10837 * 359.97438 * 5 4 3 7 7 C 1.38572 * 120.12226 * 359.86471 * 6 5 4 8 8 C 1.38525 * 119.60430 * 0.18487 * 7 6 5 9 9 C 1.50600 * 121.50860 * 180.34009 * 7 6 5 10 10 C 1.52849 * 110.51042 * 339.32839 * 9 7 6 11 11 C 1.53431 * 108.85535 * 51.39846 * 10 9 7 12 12 N 1.40216 * 119.07782 * 179.75378 * 6 5 4 13 13 S 1.65595 * 120.54859 * 346.58503 * 12 6 5 14 14 O 1.42097 * 104.27738 * 198.39618 * 13 12 6 15 15 O 1.42100 * 104.28056 * 326.25021 * 13 12 6 16 16 C 1.81398 * 104.45094 * 82.32593 * 13 12 6 17 17 C 1.53003 * 109.47407 * 179.97438 * 16 13 12 18 18 C 1.53004 * 109.46873 * 180.02562 * 17 16 13 19 19 C 1.50696 * 109.46635 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00587 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00119 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99356 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00395 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47061 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47079 * 120.00193 * 23 21 19 26 26 H 1.48492 * 109.47201 * 240.00242 * 23 21 19 27 27 H 1.09005 * 109.47237 * 300.00017 * 1 2 3 28 28 H 1.08997 * 109.47150 * 59.99875 * 1 2 3 29 29 H 1.08997 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.07760 * 0.34187 * 4 3 2 31 31 H 1.08003 * 119.94710 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.86435 * 179.91560 * 8 7 6 33 33 H 1.08996 * 109.26715 * 99.60193 * 9 7 6 34 34 H 1.09007 * 109.26379 * 219.06557 * 9 7 6 35 35 H 1.09003 * 109.57004 * 171.20813 * 10 9 7 36 36 H 1.08994 * 109.57445 * 291.46082 * 10 9 7 37 37 H 1.09000 * 109.79869 * 56.33975 * 11 10 9 38 38 H 1.09006 * 109.78932 * 177.19297 * 11 10 9 39 39 H 1.09007 * 109.47036 * 299.99980 * 16 13 12 40 40 H 1.09006 * 109.47306 * 59.99666 * 16 13 12 41 41 H 1.08997 * 109.46755 * 299.99682 * 17 16 13 42 42 H 1.09000 * 109.47121 * 60.00050 * 17 16 13 43 43 H 1.09004 * 109.46750 * 299.99585 * 18 17 16 44 44 H 1.08992 * 109.47686 * 59.99995 * 18 17 16 45 45 H 0.97005 * 119.99668 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2904 2.3749 -0.0057 5 6 1.9198 3.6032 -0.0133 6 6 3.3082 3.6755 -0.0147 7 6 4.0650 2.5147 -0.0056 8 6 3.4299 1.2837 0.0010 9 6 5.5705 2.5567 0.0009 10 6 6.0708 3.9080 -0.5090 11 6 5.3613 5.0247 0.2681 12 7 3.9251 4.9347 -0.0277 13 16 3.0494 6.2973 -0.3719 14 8 4.0297 7.2650 -0.7209 15 8 2.0809 5.8623 -1.3164 16 6 2.2550 6.7339 1.1993 17 6 1.4072 7.9934 1.0096 18 6 0.7378 8.3619 2.3352 19 6 -0.0977 9.6021 2.1481 20 1 -0.1467 10.0794 1.1806 21 6 -0.8005 10.1268 3.2120 22 7 -0.7412 9.5453 4.3901 23 14 -1.8356 11.6645 2.9804 24 1 -1.7343 12.1217 1.5711 25 1 -3.2532 11.3597 3.3008 26 1 -1.3426 12.7339 3.8849 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.2119 2.3194 -0.0046 31 1 1.3327 4.5098 -0.0174 32 1 4.0156 0.3764 0.0067 33 1 5.9303 2.4002 1.0177 34 1 5.9550 1.7648 -0.6420 35 1 7.1470 3.9814 -0.3529 36 1 5.8486 4.0022 -1.5719 37 1 5.5271 4.8932 1.3373 38 1 5.7434 5.9951 -0.0490 39 1 1.6174 5.9119 1.5249 40 1 3.0196 6.9212 1.9533 41 1 2.0452 8.8152 0.6844 42 1 0.6426 7.8065 0.2556 43 1 0.0999 7.5402 2.6608 44 1 1.5026 8.5489 3.0889 45 1 -1.2359 9.9142 5.1385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731672165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:43 Heat of formation + Delta-G solvation = -113.989212 kcal Electronic energy + Delta-G solvation = -27669.271220 eV Core-core repulsion = 23777.878611 eV Total energy + Delta-G solvation = -3891.392609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53020 -39.74653 -38.58796 -37.27727 -36.65203 -36.48090 -34.74075 -34.21415 -31.27369 -30.67342 -29.74542 -27.92828 -26.25976 -25.66530 -24.04772 -23.94864 -22.34385 -21.15587 -20.12896 -19.09270 -18.66685 -18.61535 -18.09734 -17.39293 -16.98993 -16.66759 -16.56072 -16.49849 -15.90977 -15.60620 -15.54165 -14.93475 -14.56795 -14.55792 -14.41888 -14.18241 -14.07225 -14.00402 -13.59351 -13.39252 -13.30380 -13.28853 -13.07781 -13.03374 -12.80411 -12.70070 -12.66372 -12.26638 -12.15124 -11.86390 -11.83766 -11.79488 -11.50119 -11.42436 -11.21146 -10.78804 -10.60304 -9.80343 -8.63519 -8.24763 -6.36061 -1.03481 0.24593 0.40557 1.36074 1.38670 1.39509 1.52692 2.37932 2.39654 2.50126 2.74875 2.92372 3.08929 3.34390 3.64513 3.69277 3.78345 3.84953 4.00966 4.04003 4.15491 4.19697 4.30223 4.41540 4.41698 4.49630 4.56497 4.63193 4.69803 4.73298 4.79757 4.80346 4.84574 4.98972 5.02357 5.04872 5.10246 5.28402 5.33678 5.42028 5.50130 5.56479 5.57927 5.76313 5.81425 6.16314 6.44507 6.79396 7.33509 8.86933 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.003111 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.302874 B = 8998.881105 C =10502.298330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.094 3.906 4 C -0.180 4.180 5 C -0.153 4.153 6 C 0.131 3.869 7 C -0.075 4.075 8 C -0.126 4.126 9 C -0.075 4.075 10 C -0.128 4.128 11 C 0.088 3.912 12 N -0.936 5.936 13 S 2.611 3.389 14 O -0.970 6.970 15 O -0.974 6.974 16 C -0.606 4.606 17 C -0.104 4.104 18 C 0.032 3.968 19 C -0.552 4.552 20 H 0.061 0.939 21 C 0.003 3.997 22 N -0.929 5.929 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.276 1.276 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.122 0.878 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.157 0.843 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.150 0.850 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.002 0.998 44 H 0.004 0.996 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.474 -20.439 -7.915 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.048 3.952 4 C -0.199 4.199 5 C -0.175 4.175 6 C 0.035 3.965 7 C -0.079 4.079 8 C -0.145 4.145 9 C -0.111 4.111 10 C -0.167 4.167 11 C -0.035 4.035 12 N -0.762 5.762 13 S 2.710 3.290 14 O -0.961 6.961 15 O -0.964 6.964 16 C -0.737 4.737 17 C -0.144 4.144 18 C -0.006 4.006 19 C -0.590 4.590 20 H 0.079 0.921 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.788 3.212 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.143 0.857 32 H 0.174 0.826 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.168 0.832 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.527 -20.108 -8.622 25.211 hybrid contribution -1.452 1.071 0.819 1.982 sum 11.075 -19.037 -7.802 23.365 Atomic orbital electron populations 1.23310 0.76919 1.05526 1.01938 1.86041 1.22949 1.26221 1.89114 1.19031 0.92826 0.84274 0.99058 1.21163 1.01083 0.91204 1.06464 1.21153 0.92849 0.99629 1.03822 1.17355 0.90965 0.85095 1.03047 1.19586 0.97356 0.89746 1.01224 1.20445 0.91169 0.98215 1.04635 1.20524 0.87965 0.98609 1.04035 1.21859 1.01929 0.93276 0.99607 1.22208 0.76330 1.02455 1.02474 1.55667 1.19926 1.17993 1.82625 1.04981 0.73896 0.72697 0.77380 1.93527 1.59375 1.60380 1.82809 1.93560 1.62920 1.80426 1.59469 1.30560 1.12943 1.08415 1.21816 1.21337 0.98162 0.93671 1.01185 1.18953 0.94572 0.95378 0.91719 1.21746 1.28867 1.11870 0.96521 0.92082 1.25937 0.97971 1.00763 0.94835 1.70081 1.43298 1.41928 1.01607 0.85419 0.78267 0.78849 0.78675 1.18742 1.20215 1.20169 0.92198 0.92275 0.85976 0.83705 0.85660 0.82573 0.88065 0.87979 0.86411 0.92166 0.88200 0.87797 0.84116 0.83217 0.91164 0.91387 0.97915 0.97725 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.33 -6.73 10.50 -93.58 -0.98 -7.71 16 3 C 0.09 2.14 6.68 22.45 0.15 2.29 16 4 C -0.18 -4.46 9.03 22.33 0.20 -4.26 16 5 C -0.15 -4.32 8.33 22.41 0.19 -4.13 16 6 C 0.13 3.37 6.23 38.07 0.24 3.61 16 7 C -0.07 -1.53 5.76 -19.75 -0.11 -1.65 16 8 C -0.13 -2.50 9.60 22.41 0.22 -2.28 16 9 C -0.07 -0.95 5.78 29.77 0.17 -0.78 16 10 C -0.13 -1.74 6.11 30.69 0.19 -1.55 16 11 C 0.09 1.61 6.47 86.44 0.56 2.17 16 12 N -0.94 -23.47 3.21 -337.50 -1.08 -24.55 16 13 S 2.61 81.19 4.81 -56.49 -0.27 80.92 16 14 O -0.97 -33.59 16.39 -127.65 -2.09 -35.69 16 15 O -0.97 -35.50 15.05 -127.65 -1.92 -37.42 16 16 C -0.61 -19.24 5.98 71.98 0.43 -18.81 16 17 C -0.10 -4.28 5.16 30.60 0.16 -4.12 16 18 C 0.03 1.66 4.97 29.85 0.15 1.81 16 19 C -0.55 -31.38 9.11 25.60 0.23 -31.14 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 21 C 0.00 0.19 5.46 84.66 0.46 0.65 16 22 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 23 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 24 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 27 H 0.06 0.80 7.67 -2.38 -0.02 0.78 16 28 H 0.06 0.79 7.65 -2.39 -0.02 0.77 16 29 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.15 3.06 6.30 -2.91 -0.02 3.04 16 31 H 0.13 3.77 4.59 -2.91 -0.01 3.76 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 0.92 8.12 -2.38 -0.02 0.91 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.97 6.70 -2.38 -0.02 1.95 16 39 H 0.14 4.15 7.10 -2.39 -0.02 4.13 16 40 H 0.15 4.14 8.14 -2.39 -0.02 4.12 16 41 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 44 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -75.78 372.22 1.29 -74.49 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.99 Total: 16.05 kcal Atomic # 6 Polarization: -61.18 SS G_CDS: 4.34 Total: -56.84 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -0.80 Total: -79.90 kcal Atomic # 8 Polarization: -75.82 SS G_CDS: -5.00 Total: -80.82 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 81.19 SS G_CDS: -0.27 Total: 80.92 kcal Total: -75.78 1.29 -74.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731672165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.501 kcal (2) G-P(sol) polarization free energy of solvation -75.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds