Wall clock time and date at job start Tue Mar 31 2020 22:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99695 * 2 1 4 4 C 1.53001 * 109.47427 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.46928 * 64.99706 * 4 3 2 6 6 C 1.42911 * 113.99995 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46999 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46755 * 175.00005 * 7 6 5 9 9 C 1.53003 * 109.47084 * 54.99957 * 7 6 5 10 10 N 1.46499 * 109.47239 * 295.00004 * 7 6 5 11 11 C 1.34778 * 119.99867 * 205.00716 * 10 7 6 12 12 O 1.21609 * 119.99939 * 359.97438 * 11 10 7 13 13 C 1.47421 * 119.99900 * 180.02562 * 11 10 7 14 14 C 1.39681 * 120.21901 * 359.96940 * 13 11 10 15 15 C 1.37808 * 119.94286 * 180.02562 * 14 13 11 16 16 C 1.38654 * 120.37767 * 0.02562 * 15 14 13 17 17 C 1.37909 * 120.44334 * 359.97438 * 16 15 14 18 18 C 1.39109 * 120.04959 * 0.02562 * 17 16 15 19 19 S 1.76204 * 120.19269 * 179.97438 * 18 17 16 20 20 C 1.76202 * 99.99694 * 6.88400 * 19 18 17 21 21 H 1.07998 * 120.00125 * 5.65292 * 20 19 18 22 22 C 1.38802 * 119.99933 * 185.66292 * 20 19 18 23 23 N 1.31556 * 120.00301 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00198 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46690 * 59.99685 * 24 22 20 26 26 H 1.48492 * 109.47156 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46820 * 299.99832 * 24 22 20 28 28 H 1.09001 * 109.47259 * 299.99247 * 1 2 3 29 29 H 1.08992 * 109.47612 * 60.00202 * 1 2 3 30 30 H 1.09007 * 109.46797 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47544 * 60.00099 * 3 2 1 32 32 H 1.09003 * 109.47660 * 300.00252 * 3 2 1 33 33 H 1.09006 * 109.46827 * 304.99983 * 4 3 2 34 34 H 1.08991 * 109.47526 * 185.00331 * 4 3 2 35 35 H 1.09002 * 109.46715 * 60.00032 * 6 5 4 36 36 H 1.09001 * 109.46790 * 300.00261 * 6 5 4 37 37 H 1.09001 * 109.46695 * 179.97438 * 9 7 6 38 38 H 1.08990 * 109.47199 * 299.99655 * 9 7 6 39 39 H 1.09004 * 109.47274 * 60.00126 * 9 7 6 40 40 H 0.96999 * 120.00020 * 24.99871 * 10 7 6 41 41 H 1.08003 * 120.02265 * 0.02562 * 14 13 11 42 42 H 1.07998 * 119.80890 * 180.02562 * 15 14 13 43 43 H 1.08007 * 119.77710 * 180.27598 * 16 15 14 44 44 H 1.08005 * 119.97866 * 180.02562 * 17 16 15 45 45 H 0.96996 * 120.00217 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2219 6 6 5.3811 0.4194 -1.3246 7 6 5.7246 -0.2337 -2.6649 8 1 6.8075 -0.2752 -2.7819 9 6 5.1197 0.5901 -3.8035 10 7 5.1771 -1.5921 -2.7007 11 6 5.7365 -2.5233 -3.4985 12 8 6.6954 -2.2357 -4.1889 13 6 5.1852 -3.8900 -3.5351 14 6 4.0836 -4.2251 -2.7443 15 6 3.5732 -5.5046 -2.7825 16 6 4.1473 -6.4644 -3.6021 17 6 5.2353 -6.1507 -4.3894 18 6 5.7652 -4.8647 -4.3650 19 16 7.1557 -4.4600 -5.3688 20 6 7.3011 -5.9466 -6.3035 21 1 6.5571 -6.7229 -6.2027 22 6 8.3721 -6.1200 -7.1693 23 7 9.2782 -5.1742 -7.2925 24 14 8.5267 -7.6962 -8.1598 25 1 7.3332 -7.8535 -9.0293 26 1 9.7478 -7.6335 -9.0025 27 1 8.6217 -8.8544 -7.2353 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5683 0.8410 34 1 3.9784 2.1766 0.0890 35 1 5.7350 -0.2131 -0.5105 36 1 5.8627 1.3952 -1.2623 37 1 5.3648 0.1251 -4.7583 38 1 4.0369 0.6316 -3.6865 39 1 5.5271 1.6008 -3.7769 40 1 4.4120 -1.8213 -2.1502 41 1 3.6324 -3.4820 -2.1035 42 1 2.7212 -5.7613 -2.1705 43 1 3.7367 -7.4630 -3.6278 44 1 5.6764 -6.9040 -5.0254 45 1 10.0264 -5.2953 -7.8978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742089777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:13 Heat of formation + Delta-G solvation = -100.959836 kcal Electronic energy + Delta-G solvation = -26755.907274 eV Core-core repulsion = 22865.079661 eV Total energy + Delta-G solvation = -3890.827613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62929 -38.70329 -37.76038 -37.18914 -34.87898 -32.70322 -31.69610 -30.45666 -30.19400 -29.40557 -26.71730 -26.23096 -25.77047 -23.47057 -22.86374 -21.92290 -20.96814 -19.91334 -18.15799 -17.27081 -17.13929 -17.06271 -15.97798 -15.89550 -15.66986 -15.48171 -15.11243 -15.01607 -14.47604 -14.29363 -13.93159 -13.76119 -13.57576 -13.09125 -12.98100 -12.89996 -12.77076 -12.39964 -12.11210 -11.86639 -11.80782 -11.51648 -11.44753 -11.20302 -11.15287 -11.14317 -10.90629 -10.85075 -10.27967 -10.00634 -9.85010 -9.74332 -9.55863 -9.42265 -8.69638 -8.64230 -8.25140 -7.99305 -6.46889 -6.41071 -4.11101 1.61796 2.10113 3.14519 3.17168 3.21131 3.34493 3.45936 3.47866 3.62046 3.65383 4.11383 4.57120 4.63411 4.79278 4.83858 4.99405 4.99735 5.01385 5.04720 5.10772 5.16892 5.19982 5.22653 5.37357 5.41098 5.42803 5.47850 5.56146 5.67299 5.68097 5.87574 6.01679 6.18240 6.22378 6.46564 6.48316 6.67836 6.79505 6.89028 6.93924 7.00777 7.11575 7.20606 7.50162 7.66380 8.06542 8.20923 8.90540 9.04945 10.62153 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.002699 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.285248 B =10371.862758 C =11681.857309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.374 6.374 6 C 0.054 3.946 7 C 0.151 3.849 8 H 0.100 0.900 9 C -0.159 4.159 10 N -0.729 5.729 11 C 0.553 3.447 12 O -0.512 6.512 13 C -0.176 4.176 14 C -0.059 4.059 15 C -0.187 4.187 16 C -0.077 4.077 17 C -0.155 4.155 18 C -0.056 4.056 19 S 0.182 5.818 20 C -0.595 4.595 21 H 0.090 0.910 22 C 0.083 3.917 23 N -0.859 5.859 24 Si 0.918 3.082 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.270 1.270 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.400 0.600 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 12.230 15.472 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.293 6.293 6 C -0.023 4.023 7 C 0.046 3.954 8 H 0.117 0.883 9 C -0.217 4.217 10 N -0.384 5.384 11 C 0.342 3.658 12 O -0.390 6.390 13 C -0.191 4.191 14 C -0.079 4.079 15 C -0.211 4.211 16 C -0.099 4.099 17 C -0.180 4.180 18 C -0.176 4.176 19 S 0.446 5.554 20 C -0.742 4.742 21 H 0.107 0.893 22 C -0.127 4.127 23 N -0.492 5.492 24 Si 0.743 3.257 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.195 1.195 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.236 0.764 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.156 0.844 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.064 13.331 14.395 23.032 hybrid contribution -1.209 -1.897 0.055 2.250 sum -13.273 11.434 14.449 22.709 Atomic orbital electron populations 1.22749 0.81051 1.03005 0.99737 1.87975 1.19581 1.27125 1.95342 1.22552 0.92463 0.85641 1.00735 1.22495 0.93306 0.97531 0.88050 1.87974 1.21861 1.82022 1.37468 1.22872 0.81890 0.99761 0.97814 1.20889 0.99500 0.82001 0.93037 0.88252 1.22077 1.01679 0.99019 0.98932 1.45870 1.35657 1.10001 1.46889 1.18319 0.83142 0.84726 0.79605 1.90770 1.26690 1.80484 1.41039 1.19142 1.01322 0.93086 1.05595 1.20949 0.94288 0.96215 0.96476 1.20635 1.02700 0.93940 1.03865 1.21078 0.95243 0.98371 0.95241 1.21421 0.98188 0.96459 1.01943 1.23085 1.01380 0.94969 0.98124 1.84745 1.22420 1.16647 1.31553 1.24022 1.13568 1.07446 1.29166 0.89255 1.25085 0.94072 0.97641 0.95938 1.69968 1.11583 1.32628 1.35012 0.86218 0.78030 0.81819 0.79597 1.19508 1.20597 1.19520 0.94334 0.94006 0.89448 0.92046 0.92400 0.92432 0.91877 0.92527 0.92043 0.91752 0.91807 0.92417 0.76416 0.86967 0.87121 0.87095 0.84444 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.83 10.67 -40.09 -0.43 -4.26 16 3 C 0.06 0.47 6.32 37.16 0.23 0.71 16 4 C 0.06 0.49 6.32 37.16 0.23 0.73 16 5 O -0.37 -3.96 9.16 -40.09 -0.37 -4.33 16 6 C 0.05 0.54 5.68 37.16 0.21 0.75 16 7 C 0.15 2.00 2.98 -67.93 -0.20 1.80 16 8 H 0.10 1.44 7.58 -51.93 -0.39 1.04 16 9 C -0.16 -2.08 9.29 37.16 0.35 -1.74 16 10 N -0.73 -11.26 5.01 -54.88 -0.27 -11.53 16 11 C 0.55 11.10 7.71 -12.52 -0.10 11.00 16 12 O -0.51 -12.11 13.43 5.27 0.07 -12.04 16 13 C -0.18 -3.64 5.89 -104.75 -0.62 -4.25 16 14 C -0.06 -1.00 9.53 -39.20 -0.37 -1.38 16 15 C -0.19 -3.04 10.02 -39.59 -0.40 -3.44 16 16 C -0.08 -1.37 10.02 -39.55 -0.40 -1.77 16 17 C -0.15 -3.33 9.22 -39.38 -0.36 -3.70 16 18 C -0.06 -1.31 6.15 -38.39 -0.24 -1.55 16 19 S 0.18 4.98 18.56 -107.50 -2.00 2.98 16 20 C -0.60 -16.69 9.00 30.94 0.28 -16.41 16 21 H 0.09 2.37 4.98 -52.49 -0.26 2.11 16 22 C 0.08 2.32 5.49 -17.46 -0.10 2.22 16 23 N -0.86 -25.08 13.22 55.49 0.73 -24.35 16 24 Si 0.92 20.96 29.55 -169.99 -5.02 15.94 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.83 7.56 -51.93 -0.39 0.44 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 5.54 6.41 -40.82 -0.26 5.28 16 41 H 0.11 1.55 6.40 -52.48 -0.34 1.22 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.14 3.06 5.04 -52.48 -0.26 2.80 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -33.42 387.51 -8.35 -41.77 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.54 Total: 5.68 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -0.36 Total: -15.69 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.46 Total: -35.88 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.72 Total: -20.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -2.00 Total: 2.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.42 -8.35 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742089777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.190 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds