Wall clock time and date at job start Tue Mar 31 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99695 * 2 1 4 4 C 1.53001 * 109.47427 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.46928 * 64.99706 * 4 3 2 6 6 C 1.42911 * 113.99995 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46999 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46755 * 175.00005 * 7 6 5 9 9 C 1.53003 * 109.47084 * 54.99957 * 7 6 5 10 10 N 1.46499 * 109.47239 * 295.00004 * 7 6 5 11 11 C 1.34778 * 119.99867 * 205.00716 * 10 7 6 12 12 O 1.21609 * 119.99939 * 359.97438 * 11 10 7 13 13 C 1.47421 * 119.99900 * 180.02562 * 11 10 7 14 14 C 1.39681 * 120.21901 * 359.96940 * 13 11 10 15 15 C 1.37808 * 119.94286 * 180.02562 * 14 13 11 16 16 C 1.38654 * 120.37767 * 0.02562 * 15 14 13 17 17 C 1.37909 * 120.44334 * 359.97438 * 16 15 14 18 18 C 1.39109 * 120.04959 * 0.02562 * 17 16 15 19 19 S 1.76204 * 120.19269 * 179.97438 * 18 17 16 20 20 C 1.76202 * 99.99694 * 6.88400 * 19 18 17 21 21 H 1.07998 * 120.00125 * 5.65292 * 20 19 18 22 22 C 1.38802 * 119.99933 * 185.66292 * 20 19 18 23 23 N 1.31556 * 120.00301 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00198 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46690 * 59.99685 * 24 22 20 26 26 H 1.48492 * 109.47156 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46820 * 299.99832 * 24 22 20 28 28 H 1.09001 * 109.47259 * 299.99247 * 1 2 3 29 29 H 1.08992 * 109.47612 * 60.00202 * 1 2 3 30 30 H 1.09007 * 109.46797 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47544 * 60.00099 * 3 2 1 32 32 H 1.09003 * 109.47660 * 300.00252 * 3 2 1 33 33 H 1.09006 * 109.46827 * 304.99983 * 4 3 2 34 34 H 1.08991 * 109.47526 * 185.00331 * 4 3 2 35 35 H 1.09002 * 109.46715 * 60.00032 * 6 5 4 36 36 H 1.09001 * 109.46790 * 300.00261 * 6 5 4 37 37 H 1.09001 * 109.46695 * 179.97438 * 9 7 6 38 38 H 1.08990 * 109.47199 * 299.99655 * 9 7 6 39 39 H 1.09004 * 109.47274 * 60.00126 * 9 7 6 40 40 H 0.96999 * 120.00020 * 24.99871 * 10 7 6 41 41 H 1.08003 * 120.02265 * 0.02562 * 14 13 11 42 42 H 1.07998 * 119.80890 * 180.02562 * 15 14 13 43 43 H 1.08007 * 119.77710 * 180.27598 * 16 15 14 44 44 H 1.08005 * 119.97866 * 180.02562 * 17 16 15 45 45 H 0.96996 * 120.00217 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2219 6 6 5.3811 0.4194 -1.3246 7 6 5.7246 -0.2337 -2.6649 8 1 6.8075 -0.2752 -2.7819 9 6 5.1197 0.5901 -3.8035 10 7 5.1771 -1.5921 -2.7007 11 6 5.7365 -2.5233 -3.4985 12 8 6.6954 -2.2357 -4.1889 13 6 5.1852 -3.8900 -3.5351 14 6 4.0836 -4.2251 -2.7443 15 6 3.5732 -5.5046 -2.7825 16 6 4.1473 -6.4644 -3.6021 17 6 5.2353 -6.1507 -4.3894 18 6 5.7652 -4.8647 -4.3650 19 16 7.1557 -4.4600 -5.3688 20 6 7.3011 -5.9466 -6.3035 21 1 6.5571 -6.7229 -6.2027 22 6 8.3721 -6.1200 -7.1693 23 7 9.2782 -5.1742 -7.2925 24 14 8.5267 -7.6962 -8.1598 25 1 7.3332 -7.8535 -9.0293 26 1 9.7478 -7.6335 -9.0025 27 1 8.6217 -8.8544 -7.2353 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5683 0.8410 34 1 3.9784 2.1766 0.0890 35 1 5.7350 -0.2131 -0.5105 36 1 5.8627 1.3952 -1.2623 37 1 5.3648 0.1251 -4.7583 38 1 4.0369 0.6316 -3.6865 39 1 5.5271 1.6008 -3.7769 40 1 4.4120 -1.8213 -2.1502 41 1 3.6324 -3.4820 -2.1035 42 1 2.7212 -5.7613 -2.1705 43 1 3.7367 -7.4630 -3.6278 44 1 5.6764 -6.9040 -5.0254 45 1 10.0264 -5.2953 -7.8978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742089777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:12 Heat of formation + Delta-G solvation = -124.280837 kcal Electronic energy + Delta-G solvation = -26756.918548 eV Core-core repulsion = 22865.079661 eV Total energy + Delta-G solvation = -3891.838887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08153 -39.54529 -38.95267 -38.20914 -36.11908 -34.75234 -33.05070 -31.77441 -31.36906 -30.55667 -27.82718 -27.46063 -26.93751 -24.95636 -23.45987 -23.42339 -22.25115 -21.35431 -19.93886 -18.77645 -18.04191 -17.71057 -17.36576 -17.05284 -16.98359 -16.41741 -16.28393 -16.06339 -15.77372 -15.73581 -15.39605 -15.27993 -14.72285 -14.68032 -14.37235 -14.07885 -13.60724 -13.45385 -13.30467 -13.20780 -12.96124 -12.93513 -12.82366 -12.60285 -12.53852 -12.16830 -12.06876 -11.97865 -11.83719 -11.47604 -11.38378 -11.22366 -10.58476 -10.50893 -10.40590 -10.09597 -9.89226 -9.74012 -8.44919 -8.43640 -6.22614 0.05543 0.54807 1.27085 1.38509 1.44316 1.65714 2.04907 2.18757 2.31164 2.70381 2.88936 2.94629 3.06188 3.26574 3.79020 3.99288 4.04290 4.11606 4.19671 4.27589 4.30285 4.37585 4.49667 4.54173 4.57189 4.60176 4.63493 4.64944 4.66086 4.68793 4.83523 4.87111 4.89097 4.93711 5.03867 5.13436 5.35676 5.37831 5.47500 5.57549 5.63897 5.68091 6.10898 6.17338 6.21185 6.35344 6.68781 6.97022 7.40896 8.61633 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.002699 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.285248 B =10371.862758 C =11681.857309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.059 3.941 4 C 0.058 3.942 5 O -0.394 6.394 6 C 0.065 3.935 7 C 0.143 3.857 8 H 0.082 0.918 9 C -0.150 4.150 10 N -0.708 5.708 11 C 0.546 3.454 12 O -0.555 6.555 13 C -0.183 4.183 14 C -0.054 4.054 15 C -0.158 4.158 16 C -0.069 4.069 17 C -0.175 4.175 18 C -0.071 4.071 19 S 0.066 5.934 20 C -0.603 4.603 21 H 0.094 0.906 22 C 0.024 3.976 23 N -0.905 5.905 24 Si 0.993 3.007 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.260 1.260 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.411 0.589 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.151 0.849 44 H 0.120 0.880 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.487 11.965 18.416 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.018 4.018 4 C -0.018 4.018 5 O -0.314 6.314 6 C -0.012 4.012 7 C 0.039 3.961 8 H 0.100 0.900 9 C -0.208 4.208 10 N -0.362 5.362 11 C 0.335 3.665 12 O -0.435 6.435 13 C -0.196 4.196 14 C -0.074 4.074 15 C -0.181 4.181 16 C -0.090 4.090 17 C -0.201 4.201 18 C -0.189 4.189 19 S 0.325 5.675 20 C -0.750 4.750 21 H 0.112 0.888 22 C -0.182 4.182 23 N -0.540 5.540 24 Si 0.814 3.186 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.184 1.184 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.249 0.751 41 H 0.170 0.830 42 H 0.181 0.819 43 H 0.168 0.832 44 H 0.138 0.862 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.698 13.084 17.436 26.863 hybrid contribution -0.465 -1.704 -0.546 1.849 sum -16.163 11.381 16.889 26.000 Atomic orbital electron populations 1.22874 0.79899 1.03562 1.00629 1.87917 1.21047 1.28634 1.95568 1.22713 0.92237 0.85026 1.01796 1.22720 0.93609 0.98658 0.86847 1.87935 1.21698 1.82651 1.39078 1.22725 0.82330 1.00837 0.95300 1.21080 0.98594 0.80935 0.95515 0.89954 1.21986 1.01910 0.99990 0.96939 1.45743 1.35102 1.10177 1.45175 1.18488 0.82821 0.85454 0.79725 1.90769 1.28708 1.81102 1.42961 1.19529 1.02036 0.92899 1.05126 1.21403 0.92542 0.97891 0.95582 1.21299 1.02446 0.92549 1.01779 1.21530 0.93240 1.00716 0.93475 1.21461 0.99954 0.95385 1.03265 1.22989 1.00314 0.96780 0.98863 1.84907 1.27628 1.18937 1.36052 1.24224 1.13992 1.07167 1.29593 0.88848 1.26150 0.93566 1.01331 0.97103 1.70125 1.12502 1.35005 1.36404 0.85089 0.78297 0.77232 0.77988 1.18682 1.19830 1.18405 0.92745 0.93818 0.89149 0.89632 0.92628 0.92237 0.89434 0.91858 0.89357 0.95387 0.91459 0.89920 0.75130 0.82998 0.81853 0.83151 0.86198 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.20 10.67 -144.33 -1.54 -8.74 16 3 C 0.06 0.72 6.32 71.98 0.45 1.17 16 4 C 0.06 0.71 6.32 71.98 0.45 1.17 16 5 O -0.39 -7.21 9.16 -144.33 -1.32 -8.54 16 6 C 0.06 1.14 5.68 71.98 0.41 1.54 16 7 C 0.14 3.72 2.98 44.99 0.13 3.85 16 8 H 0.08 2.46 7.58 -2.39 -0.02 2.44 16 9 C -0.15 -3.91 9.29 71.98 0.67 -3.24 16 10 N -0.71 -21.35 5.01 -445.80 -2.23 -23.58 16 11 C 0.55 22.53 7.71 86.66 0.67 23.20 16 12 O -0.56 -28.19 13.43 -4.06 -0.05 -28.25 16 13 C -0.18 -7.49 5.89 -19.95 -0.12 -7.61 16 14 C -0.05 -1.64 9.53 22.52 0.21 -1.42 16 15 C -0.16 -4.24 10.02 22.27 0.22 -4.02 16 16 C -0.07 -2.18 10.02 22.29 0.22 -1.96 16 17 C -0.18 -7.56 9.22 22.40 0.21 -7.35 16 18 C -0.07 -3.48 6.15 23.04 0.14 -3.34 16 19 S 0.07 3.92 18.56 -56.49 -1.05 2.87 16 20 C -0.60 -35.97 9.00 67.95 0.61 -35.36 16 21 H 0.09 5.25 4.98 -2.91 -0.01 5.23 16 22 C 0.02 1.40 5.49 84.87 0.47 1.87 16 23 N -0.91 -56.35 13.22 21.64 0.29 -56.07 16 24 Si 0.99 44.65 29.55 68.60 2.03 46.68 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.69 7.56 -2.39 -0.02 1.67 16 39 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.41 10.36 6.41 -92.71 -0.59 9.77 16 41 H 0.15 3.39 6.40 -2.91 -0.02 3.37 16 42 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 44 H 0.12 5.53 5.04 -2.91 -0.01 5.52 16 45 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -81.54 387.51 2.53 -79.01 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.41 Total: 26.55 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 6.01 Total: -29.94 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.95 Total: -79.65 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -2.92 Total: -45.52 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.05 Total: 2.87 kcal Total: -81.54 2.53 -79.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742089777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.271 kcal (2) G-P(sol) polarization free energy of solvation -81.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds