Wall clock time and date at job start Tue Mar 31 2020 22:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35644 * 116.99709 * 2 1 4 4 C 1.38625 * 120.14618 * 0.23222 * 3 2 1 5 5 C 1.38133 * 120.16467 * 180.25797 * 4 3 2 6 6 C 1.38426 * 120.44717 * 359.74075 * 5 4 3 7 7 C 1.38107 * 120.27806 * 0.02562 * 6 5 4 8 8 F 1.35107 * 120.08578 * 179.97438 * 7 6 5 9 9 C 1.40030 * 119.83262 * 359.97438 * 7 6 5 10 10 C 1.47250 * 120.21687 * 179.97438 * 9 7 6 11 11 O 1.21528 * 119.99826 * 90.00713 * 10 9 7 12 12 O 1.34767 * 119.99883 * 269.99663 * 10 9 7 13 13 C 1.45200 * 116.99850 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47097 * 330.00239 * 13 12 10 15 15 C 1.52997 * 109.46978 * 90.00173 * 13 12 10 16 16 C 1.50701 * 109.47232 * 210.00262 * 13 12 10 17 17 O 1.21281 * 119.99598 * 0.02562 * 16 13 12 18 18 N 1.34776 * 120.00175 * 180.02562 * 16 13 12 19 19 C 1.46503 * 119.99773 * 359.97438 * 18 16 13 20 20 C 1.46500 * 119.99845 * 180.02562 * 18 16 13 21 21 C 1.50703 * 109.47168 * 89.99595 * 20 18 16 22 22 H 1.07994 * 120.00213 * 359.97438 * 21 20 18 23 23 C 1.37877 * 120.00051 * 179.97438 * 21 20 18 24 24 N 1.31506 * 120.00386 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99882 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47043 * 89.99950 * 25 23 21 27 27 H 1.48499 * 109.47299 * 210.00235 * 25 23 21 28 28 H 1.48504 * 109.47133 * 330.00023 * 25 23 21 29 29 H 1.08997 * 109.46913 * 59.99906 * 1 2 3 30 30 H 1.08997 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46615 * 300.00012 * 1 2 3 32 32 H 1.08007 * 119.91602 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.77647 * 179.72559 * 5 4 3 34 34 H 1.08005 * 119.85713 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47153 * 60.00100 * 15 13 12 36 36 H 1.08998 * 109.47533 * 179.97438 * 15 13 12 37 37 H 1.08996 * 109.47853 * 300.00072 * 15 13 12 38 38 H 1.09002 * 109.46586 * 90.00521 * 19 18 16 39 39 H 1.09004 * 109.46876 * 210.00340 * 19 18 16 40 40 H 1.08998 * 109.47192 * 330.00289 * 19 18 16 41 41 H 1.09001 * 109.46636 * 209.99063 * 20 18 16 42 42 H 1.08995 * 109.47094 * 329.99162 * 20 18 16 43 43 H 0.96994 * 120.00795 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2927 2.3731 0.0049 5 6 1.9193 3.6041 -0.0005 6 6 3.3010 3.6879 -0.0054 7 6 4.0683 2.5395 -0.0054 8 9 5.4166 2.6258 -0.0107 9 6 3.4452 1.2855 0.0000 10 6 4.2550 0.0557 -0.0006 11 8 4.5935 -0.4495 1.0516 12 8 4.6207 -0.5098 -1.1680 13 6 5.4179 -1.7210 -1.0926 14 1 6.0246 -1.7008 -0.1872 15 6 4.4929 -2.9392 -1.0596 16 6 6.3178 -1.8060 -2.2985 17 8 6.2901 -0.9316 -3.1385 18 7 7.1531 -2.8537 -2.4435 19 6 7.1868 -3.9096 -1.4284 20 6 8.0282 -2.9360 -3.6155 21 6 9.3386 -2.2560 -3.3127 22 1 9.5030 -1.8071 -2.3444 23 6 10.3277 -2.2071 -4.2721 24 7 11.4714 -1.6142 -4.0078 25 14 10.0437 -2.9842 -5.9469 26 1 9.4490 -1.9794 -6.8644 27 1 11.3389 -3.4547 -6.5004 28 1 9.1173 -4.1365 -5.8072 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.2141 2.3177 0.0082 33 1 1.3273 4.5073 -0.0012 34 1 3.7811 4.6554 -0.0091 35 1 3.8862 -2.9593 -1.9649 36 1 5.0913 -3.8485 -1.0034 37 1 3.8420 -2.8778 -0.1874 38 1 6.4641 -4.6839 -1.6857 39 1 8.1859 -4.3436 -1.3888 40 1 6.9355 -3.4867 -0.4558 41 1 8.2100 -3.9825 -3.8603 42 1 7.5498 -2.4426 -4.4615 43 1 12.1671 -1.5794 -4.6828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745311604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:22 Heat of formation + Delta-G solvation = -152.085782 kcal Electronic energy + Delta-G solvation = -29813.459927 eV Core-core repulsion = 25354.202151 eV Total energy + Delta-G solvation = -4459.257776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.22642 -41.00745 -40.14789 -38.92135 -37.65676 -36.30716 -35.02840 -32.87761 -32.14426 -31.29524 -30.40205 -28.25468 -27.86691 -26.35856 -25.22183 -24.00578 -22.70223 -22.26606 -20.99791 -19.05255 -18.85783 -18.14388 -17.53007 -16.99460 -16.93508 -16.41650 -16.31881 -16.17696 -15.71762 -15.60356 -15.47842 -15.06677 -14.94483 -14.70577 -13.91965 -13.58282 -13.47973 -13.29159 -13.00986 -12.87869 -12.76731 -12.42152 -12.36387 -12.26219 -12.16997 -11.82413 -11.77882 -11.52368 -11.52032 -11.25275 -10.94528 -10.66614 -10.64839 -10.51192 -10.14288 -9.53487 -9.35620 -8.98184 -8.79793 -8.57905 -7.76753 -6.07184 -4.06630 0.47260 0.78250 2.01050 2.41917 2.57192 3.05742 3.21780 3.30466 3.36254 3.38130 3.75218 3.91798 4.23613 4.40595 4.42190 4.54095 4.58887 4.70637 4.74786 4.79443 4.80594 4.98909 5.06246 5.10539 5.25826 5.33684 5.47622 5.54343 5.55743 5.64298 5.68119 5.79289 5.80322 5.99538 6.16926 6.19948 6.34640 6.66140 6.74473 6.91571 7.26400 7.60027 7.64502 8.13243 8.46813 8.85472 8.96945 9.52067 11.06196 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016192 B = 0.002960 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.862199 B = 9457.013408 C =10276.094575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.199 3.801 4 C -0.223 4.223 5 C -0.028 4.028 6 C -0.192 4.192 7 C 0.185 3.815 8 F -0.116 7.116 9 C -0.176 4.176 10 C 0.528 3.472 11 O -0.491 6.491 12 O -0.313 6.313 13 C 0.069 3.931 14 H 0.109 0.891 15 C -0.174 4.174 16 C 0.512 3.488 17 O -0.517 6.517 18 N -0.591 5.591 19 C 0.075 3.925 20 C 0.217 3.783 21 C -0.532 4.532 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.265 1.265 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.718 4.555 10.532 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.151 3.849 4 C -0.242 4.242 5 C -0.046 4.046 6 C -0.210 4.210 7 C 0.165 3.835 8 F -0.094 7.094 9 C -0.179 4.179 10 C 0.370 3.630 11 O -0.378 6.378 12 O -0.228 6.228 13 C 0.011 3.989 14 H 0.126 0.874 15 C -0.231 4.231 16 C 0.297 3.703 17 O -0.392 6.392 18 N -0.325 5.325 19 C -0.068 4.068 20 C 0.097 3.903 21 C -0.570 4.570 22 H 0.093 0.907 23 C -0.130 4.130 24 N -0.534 5.534 25 Si 0.704 3.296 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.283 4.663 10.278 27.687 hybrid contribution 0.198 -0.290 -0.703 0.786 sum -25.085 4.373 9.575 27.204 Atomic orbital electron populations 1.23221 0.76993 1.04845 1.01849 1.86090 1.22488 1.25915 1.87251 1.18476 0.89240 0.85386 0.91764 1.21217 1.00745 0.91480 1.10748 1.20945 0.93428 0.97639 0.92609 1.21024 0.94289 0.97605 1.08125 1.17274 0.77528 0.91910 0.96759 1.91628 1.28173 1.96823 1.92815 1.18220 0.91168 0.91179 1.17361 1.20545 0.76919 0.83131 0.82426 1.90849 1.51942 1.62372 1.32637 1.86764 1.63633 1.39710 1.32696 1.22635 0.92955 0.83189 1.00122 0.87372 1.22397 1.00294 0.96773 1.03663 1.19758 0.80998 0.82783 0.86804 1.90708 1.67849 1.37638 1.42991 1.47710 1.38954 1.21285 1.24552 1.21922 1.03091 0.90795 0.91030 1.19719 0.89606 0.97277 0.83660 1.21334 0.96788 1.36752 1.02173 0.90685 1.24856 0.94877 0.94848 0.98391 1.69892 1.05399 1.43346 1.34807 0.86842 0.77767 0.80220 0.84806 1.19846 1.21036 1.19017 0.91866 0.87549 0.92014 0.83815 0.83851 0.83353 0.91001 0.88833 0.91112 0.92889 0.90064 0.91929 0.94804 0.94364 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.34 9.95 -18.63 -0.19 -3.53 16 3 C 0.20 2.28 6.70 -38.68 -0.26 2.02 16 4 C -0.22 -1.71 9.03 -39.48 -0.36 -2.07 16 5 C -0.03 -0.19 10.02 -39.55 -0.40 -0.59 16 6 C -0.19 -1.78 10.00 -39.56 -0.40 -2.18 16 7 C 0.19 2.51 7.29 -38.96 -0.28 2.23 16 8 F -0.12 -1.86 16.83 2.25 0.04 -1.82 16 9 C -0.18 -2.60 5.77 -104.81 -0.60 -3.20 16 10 C 0.53 9.38 6.55 34.39 0.23 9.60 16 11 O -0.49 -9.27 16.37 -19.29 -0.32 -9.59 16 12 O -0.31 -6.04 9.43 -47.36 -0.45 -6.49 16 13 C 0.07 1.26 2.18 -27.88 -0.06 1.20 16 14 H 0.11 1.92 6.42 -51.93 -0.33 1.58 16 15 C -0.17 -2.39 9.19 37.16 0.34 -2.04 16 16 C 0.51 11.39 7.15 -10.99 -0.08 11.32 16 17 O -0.52 -13.80 16.08 -14.11 -0.23 -14.03 16 18 N -0.59 -12.63 2.86 -182.95 -0.52 -13.15 16 19 C 0.08 1.17 8.80 59.85 0.53 1.70 16 20 C 0.22 5.42 4.23 -5.19 -0.02 5.40 16 21 C -0.53 -15.63 9.94 -34.44 -0.34 -15.98 16 22 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 23 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 24 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 25 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 26 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 29 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 30 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 32 H 0.14 0.62 6.29 -52.48 -0.33 0.29 16 33 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.09 4.53 -51.93 -0.24 0.85 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 39 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.06 0.85 6.01 -51.93 -0.31 0.54 16 41 H 0.03 0.79 7.13 -51.93 -0.37 0.42 16 42 H 0.04 1.01 6.85 -51.93 -0.36 0.66 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -39.10 370.30 -6.00 -45.10 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.22 Total: -2.45 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -0.81 Total: 10.59 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.25 Total: -40.47 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.17 Total: -33.63 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.10 -6.00 -45.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745311604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.988 kcal (2) G-P(sol) polarization free energy of solvation -39.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds