Wall clock time and date at job start Tue Mar 31 2020 22:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47115 * 2 1 4 4 C 1.36936 * 119.99682 * 273.96147 * 3 2 1 5 5 H 1.07997 * 119.99871 * 144.38799 * 4 3 2 6 6 C 1.38810 * 120.00030 * 324.37980 * 4 3 2 7 7 N 1.31622 * 120.00514 * 336.69759 * 6 4 3 8 8 Si 1.86803 * 119.99732 * 156.69460 * 6 4 3 9 9 H 1.48501 * 109.47237 * 90.00371 * 8 6 4 10 10 H 1.48502 * 109.46795 * 210.00210 * 8 6 4 11 11 H 1.48500 * 109.47317 * 329.99975 * 8 6 4 12 12 S 1.65596 * 119.99721 * 93.95915 * 3 2 1 13 13 O 1.42106 * 106.39962 * 156.45916 * 12 3 2 14 14 O 1.42099 * 106.40702 * 23.54181 * 12 3 2 15 15 C 1.76201 * 107.21883 * 269.99826 * 12 3 2 16 16 C 1.38406 * 119.82387 * 90.00327 * 15 12 3 17 17 C 1.37885 * 120.17275 * 179.97438 * 16 15 12 18 18 C 1.39854 * 119.82312 * 0.02562 * 17 16 15 19 19 C 1.47164 * 120.17484 * 180.02562 * 18 17 16 20 20 O 1.21259 * 119.99841 * 353.98071 * 19 18 17 21 21 C 1.50697 * 120.00563 * 174.26024 * 19 18 17 22 22 C 1.52998 * 109.47432 * 184.50082 * 21 19 18 23 23 C 1.53000 * 109.47073 * 304.50232 * 21 19 18 24 24 C 1.53000 * 109.46973 * 64.49988 * 21 19 18 25 25 C 1.39858 * 119.65994 * 0.27343 * 18 17 16 26 26 C 1.37898 * 119.81956 * 359.42996 * 25 18 17 27 27 H 1.09003 * 109.47324 * 299.99697 * 1 2 3 28 28 H 1.09003 * 109.47161 * 59.99734 * 1 2 3 29 29 H 1.09005 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47101 * 239.99927 * 2 1 3 31 31 H 1.08997 * 109.46985 * 119.99840 * 2 1 3 32 32 H 0.96993 * 120.00122 * 180.02562 * 7 6 4 33 33 H 1.07994 * 119.91421 * 359.97438 * 16 15 12 34 34 H 1.07991 * 120.09291 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.46815 * 59.99945 * 22 21 19 36 36 H 1.08998 * 109.47305 * 180.02562 * 22 21 19 37 37 H 1.09005 * 109.47083 * 299.99923 * 22 21 19 38 38 H 1.08998 * 109.46917 * 66.36773 * 23 21 19 39 39 H 1.08998 * 109.47382 * 186.36599 * 23 21 19 40 40 H 1.08999 * 109.46925 * 306.36590 * 23 21 19 41 41 H 1.09002 * 109.46999 * 67.41396 * 24 21 19 42 42 H 1.09009 * 109.47100 * 187.41429 * 24 21 19 43 43 H 1.08991 * 109.47324 * 307.41411 * 24 21 19 44 44 H 1.07998 * 120.09089 * 179.70050 * 25 18 17 45 45 H 1.07996 * 119.91027 * 180.29567 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1693 2.0540 -1.1831 5 1 1.9608 3.1125 -1.2328 6 6 2.5904 1.3755 -2.3185 7 7 3.2692 0.2540 -2.2012 8 14 2.1935 2.0542 -4.0130 9 1 3.2855 2.9598 -4.4519 10 1 2.0631 0.9324 -4.9774 11 1 0.9163 2.8097 -3.9570 12 16 2.3876 2.1288 1.4307 13 8 3.3094 3.1637 1.1164 14 8 2.6692 1.0942 2.3632 15 6 0.9210 2.9240 1.9976 16 6 0.0405 2.2404 2.8179 17 6 -1.1091 2.8559 3.2661 18 6 -1.3845 4.1742 2.8891 19 6 -2.6089 4.8388 3.3634 20 8 -3.4348 4.2114 3.9916 21 6 -2.8393 6.2974 3.0631 22 6 -4.1193 6.7654 3.7584 23 6 -1.6526 7.1170 3.5741 24 6 -2.9798 6.4910 1.5519 25 6 -0.4929 4.8561 2.0548 26 6 0.6556 4.2288 1.6200 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5638 -0.2198 -2.9947 33 1 0.2544 1.2223 3.1078 34 1 -1.7950 2.3215 3.9065 35 1 -4.0192 6.6275 4.8350 36 1 -4.2862 7.8203 3.5408 37 1 -4.9648 6.1815 3.3943 38 1 -0.7617 6.8633 2.9996 39 1 -1.8684 8.1792 3.4596 40 1 -1.4823 6.8922 4.6269 41 1 -3.8988 6.0158 1.2087 42 1 -3.0144 7.5563 1.3237 43 1 -2.1264 6.0388 1.0468 44 1 -0.7011 5.8726 1.7555 45 1 1.3474 4.7556 0.9795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749172056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:17 Heat of formation + Delta-G solvation = -77.024066 kcal Electronic energy + Delta-G solvation = -28373.653508 eV Core-core repulsion = 24483.863828 eV Total energy + Delta-G solvation = -3889.789680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.68123 -38.29687 -36.23783 -36.13331 -35.90685 -34.73547 -31.79774 -31.48928 -31.01810 -29.26606 -27.63730 -27.46180 -25.33218 -24.64816 -22.73595 -22.06685 -21.64135 -19.08937 -18.67886 -17.84299 -16.92233 -16.44589 -16.29965 -15.99474 -15.18814 -15.07315 -14.90388 -14.69247 -14.19454 -13.94427 -13.84139 -13.48455 -13.17856 -13.12163 -12.85017 -12.63597 -12.52624 -12.49581 -12.36790 -12.30473 -12.01755 -11.93639 -11.39302 -11.31243 -11.25644 -11.06272 -11.00751 -10.95848 -10.87681 -10.81408 -10.48607 -10.31623 -10.24983 -9.86311 -9.67195 -9.24808 -9.04298 -8.96477 -7.77792 -6.33873 -4.01636 0.32351 1.37346 1.41700 2.15679 3.16638 3.24303 3.27439 3.58450 3.67811 4.09780 4.38780 4.41760 4.57274 4.58468 4.69724 4.71819 4.89754 4.98536 5.08892 5.21559 5.28372 5.31327 5.38674 5.43044 5.52970 5.54972 5.60142 5.68974 5.70290 5.84201 5.92481 5.97753 6.00636 6.04395 6.11188 6.20789 6.24511 6.31722 6.33311 6.55771 6.83347 6.88185 7.24460 7.29196 7.35296 7.71298 8.35783 8.93938 9.32077 10.68571 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.003742 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.095145 B = 7481.003264 C = 8126.429715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.838 5.838 4 C -0.283 4.283 5 H 0.091 0.909 6 C 0.041 3.959 7 N -0.852 5.852 8 Si 0.915 3.085 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.269 1.269 12 S 2.620 3.380 13 O -0.969 6.969 14 O -0.995 6.995 15 C -0.620 4.620 16 C -0.037 4.037 17 C -0.087 4.087 18 C -0.132 4.132 19 C 0.406 3.594 20 O -0.448 6.448 21 C -0.109 4.109 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.152 4.152 25 C -0.110 4.110 26 C -0.033 4.033 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.269 0.731 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.149 0.851 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 9.675 6.221 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.013 4.013 3 N -0.670 5.670 4 C -0.420 4.420 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.491 5.491 8 Si 0.741 3.259 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.194 1.194 12 S 2.717 3.283 13 O -0.958 6.958 14 O -0.985 6.985 15 C -0.702 4.702 16 C -0.056 4.056 17 C -0.106 4.106 18 C -0.133 4.133 19 C 0.283 3.717 20 O -0.322 6.322 21 C -0.110 4.110 22 C -0.190 4.190 23 C -0.208 4.208 24 C -0.209 4.209 25 C -0.128 4.128 26 C -0.052 4.052 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.166 0.834 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.073 9.260 7.058 16.068 hybrid contribution -0.815 0.461 -0.828 1.250 sum -11.889 9.721 6.230 16.572 Atomic orbital electron populations 1.22243 0.98684 1.00214 1.01348 1.21322 0.91495 0.83849 1.04633 1.52593 1.76722 1.20778 1.16907 1.19073 1.43075 0.95102 0.84701 0.89147 1.25383 0.94509 0.96859 1.00008 1.70002 1.31614 1.17260 1.30269 0.86139 0.79236 0.78655 0.81872 1.20166 1.20747 1.19372 1.05458 0.73810 0.74132 0.74934 1.93441 1.58639 1.59807 1.83939 1.93416 1.83181 1.56299 1.65561 1.31910 1.23674 1.06126 1.08505 1.20922 0.91943 0.99749 0.92937 1.21452 0.96881 0.93622 0.98671 1.20613 0.96718 0.95567 1.00367 1.22576 0.84006 0.89690 0.75422 1.90496 1.43775 1.67116 1.30793 1.21072 0.98282 0.93397 0.98275 1.21721 0.95653 1.00993 1.00591 1.22127 0.96901 0.99868 1.01891 1.22111 1.03416 1.03121 0.92267 1.21939 0.93746 1.00366 0.96729 1.20991 0.95946 0.92738 0.95521 0.94390 0.92179 0.93228 0.87007 0.92146 0.92110 0.83946 0.84613 0.92189 0.91856 0.91969 0.90671 0.91198 0.92115 0.91898 0.91021 0.90692 0.83392 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 10.22 37.16 0.38 -2.63 16 2 C 0.11 2.48 6.00 -4.04 -0.02 2.46 16 3 N -0.84 -19.67 2.83 -59.91 -0.17 -19.84 16 4 C -0.28 -6.99 8.87 -15.06 -0.13 -7.12 16 5 H 0.09 2.14 7.93 -52.49 -0.42 1.72 16 6 C 0.04 1.01 4.96 -17.43 -0.09 0.92 16 7 N -0.85 -22.10 11.40 55.49 0.63 -21.47 16 8 Si 0.91 19.12 29.61 -169.99 -5.03 14.08 16 9 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 12 S 2.62 58.67 5.65 -107.50 -0.61 58.07 16 13 O -0.97 -24.07 16.48 -57.17 -0.94 -25.01 16 14 O -1.00 -23.65 15.83 -57.17 -0.90 -24.56 16 15 C -0.62 -11.32 5.98 -39.46 -0.24 -11.55 16 16 C -0.04 -0.60 8.29 -39.65 -0.33 -0.93 16 17 C -0.09 -1.30 9.60 -39.11 -0.38 -1.67 16 18 C -0.13 -1.82 5.69 -105.06 -0.60 -2.42 16 19 C 0.41 5.17 5.94 -30.69 -0.18 4.98 16 20 O -0.45 -6.72 15.99 5.58 0.09 -6.63 16 21 C -0.11 -1.04 0.75 -155.66 -0.12 -1.15 16 22 C -0.13 -1.16 7.77 37.16 0.29 -0.87 16 23 C -0.15 -1.23 8.08 37.16 0.30 -0.93 16 24 C -0.15 -1.27 8.18 37.16 0.30 -0.97 16 25 C -0.11 -1.44 7.24 -39.10 -0.28 -1.73 16 26 C -0.03 -0.53 9.50 -39.65 -0.38 -0.91 16 27 H 0.04 0.64 6.88 -51.93 -0.36 0.28 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.11 2.65 5.43 -51.93 -0.28 2.37 16 31 H 0.06 1.29 6.93 -51.93 -0.36 0.93 16 32 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.14 2.23 7.60 -52.49 -0.40 1.83 16 34 H 0.14 1.82 7.66 -52.49 -0.40 1.42 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 38 H 0.07 0.61 4.89 -51.93 -0.25 0.36 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 43 H 0.07 0.65 4.95 -51.93 -0.26 0.40 16 44 H 0.15 1.47 3.56 -52.49 -0.19 1.28 16 45 H 0.15 2.26 7.60 -52.49 -0.40 1.86 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -30.85 371.10 -9.06 -39.90 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.25 Total: 4.38 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -1.47 Total: -24.52 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.46 Total: -41.31 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -1.76 Total: -56.20 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.08 kcal Atomic # 16 Polarization: 58.67 SS G_CDS: -0.61 Total: 58.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.85 -9.06 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749172056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.120 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds