Wall clock time and date at job start Tue Mar 31 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47115 * 2 1 4 4 C 1.36936 * 119.99682 * 273.96147 * 3 2 1 5 5 H 1.07997 * 119.99871 * 144.38799 * 4 3 2 6 6 C 1.38810 * 120.00030 * 324.37980 * 4 3 2 7 7 N 1.31622 * 120.00514 * 336.69759 * 6 4 3 8 8 Si 1.86803 * 119.99732 * 156.69460 * 6 4 3 9 9 H 1.48501 * 109.47237 * 90.00371 * 8 6 4 10 10 H 1.48502 * 109.46795 * 210.00210 * 8 6 4 11 11 H 1.48500 * 109.47317 * 329.99975 * 8 6 4 12 12 S 1.65596 * 119.99721 * 93.95915 * 3 2 1 13 13 O 1.42106 * 106.39962 * 156.45916 * 12 3 2 14 14 O 1.42099 * 106.40702 * 23.54181 * 12 3 2 15 15 C 1.76201 * 107.21883 * 269.99826 * 12 3 2 16 16 C 1.38406 * 119.82387 * 90.00327 * 15 12 3 17 17 C 1.37885 * 120.17275 * 179.97438 * 16 15 12 18 18 C 1.39854 * 119.82312 * 0.02562 * 17 16 15 19 19 C 1.47164 * 120.17484 * 180.02562 * 18 17 16 20 20 O 1.21259 * 119.99841 * 353.98071 * 19 18 17 21 21 C 1.50697 * 120.00563 * 174.26024 * 19 18 17 22 22 C 1.52998 * 109.47432 * 184.50082 * 21 19 18 23 23 C 1.53000 * 109.47073 * 304.50232 * 21 19 18 24 24 C 1.53000 * 109.46973 * 64.49988 * 21 19 18 25 25 C 1.39858 * 119.65994 * 0.27343 * 18 17 16 26 26 C 1.37898 * 119.81956 * 359.42996 * 25 18 17 27 27 H 1.09003 * 109.47324 * 299.99697 * 1 2 3 28 28 H 1.09003 * 109.47161 * 59.99734 * 1 2 3 29 29 H 1.09005 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47101 * 239.99927 * 2 1 3 31 31 H 1.08997 * 109.46985 * 119.99840 * 2 1 3 32 32 H 0.96993 * 120.00122 * 180.02562 * 7 6 4 33 33 H 1.07994 * 119.91421 * 359.97438 * 16 15 12 34 34 H 1.07991 * 120.09291 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.46815 * 59.99945 * 22 21 19 36 36 H 1.08998 * 109.47305 * 180.02562 * 22 21 19 37 37 H 1.09005 * 109.47083 * 299.99923 * 22 21 19 38 38 H 1.08998 * 109.46917 * 66.36773 * 23 21 19 39 39 H 1.08998 * 109.47382 * 186.36599 * 23 21 19 40 40 H 1.08999 * 109.46925 * 306.36590 * 23 21 19 41 41 H 1.09002 * 109.46999 * 67.41396 * 24 21 19 42 42 H 1.09009 * 109.47100 * 187.41429 * 24 21 19 43 43 H 1.08991 * 109.47324 * 307.41411 * 24 21 19 44 44 H 1.07998 * 120.09089 * 179.70050 * 25 18 17 45 45 H 1.07996 * 119.91027 * 180.29567 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1693 2.0540 -1.1831 5 1 1.9608 3.1125 -1.2328 6 6 2.5904 1.3755 -2.3185 7 7 3.2692 0.2540 -2.2012 8 14 2.1935 2.0542 -4.0130 9 1 3.2855 2.9598 -4.4519 10 1 2.0631 0.9324 -4.9774 11 1 0.9163 2.8097 -3.9570 12 16 2.3876 2.1288 1.4307 13 8 3.3094 3.1637 1.1164 14 8 2.6692 1.0942 2.3632 15 6 0.9210 2.9240 1.9976 16 6 0.0405 2.2404 2.8179 17 6 -1.1091 2.8559 3.2661 18 6 -1.3845 4.1742 2.8891 19 6 -2.6089 4.8388 3.3634 20 8 -3.4348 4.2114 3.9916 21 6 -2.8393 6.2974 3.0631 22 6 -4.1193 6.7654 3.7584 23 6 -1.6526 7.1170 3.5741 24 6 -2.9798 6.4910 1.5519 25 6 -0.4929 4.8561 2.0548 26 6 0.6556 4.2288 1.6200 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5638 -0.2198 -2.9947 33 1 0.2544 1.2223 3.1078 34 1 -1.7950 2.3215 3.9065 35 1 -4.0192 6.6275 4.8350 36 1 -4.2862 7.8203 3.5408 37 1 -4.9648 6.1815 3.3943 38 1 -0.7617 6.8633 2.9996 39 1 -1.8684 8.1792 3.4596 40 1 -1.4823 6.8922 4.6269 41 1 -3.8988 6.0158 1.2087 42 1 -3.0144 7.5563 1.3237 43 1 -2.1264 6.0388 1.0468 44 1 -0.7011 5.8726 1.7555 45 1 1.3474 4.7556 0.9795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749172056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:16 Heat of formation + Delta-G solvation = -95.358460 kcal Electronic energy + Delta-G solvation = -28374.448547 eV Core-core repulsion = 24483.863828 eV Total energy + Delta-G solvation = -3890.584719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.71051 -39.48031 -38.06687 -37.69057 -36.98480 -36.60913 -33.59847 -32.71483 -32.23685 -30.94833 -28.24400 -28.15551 -26.50547 -26.42031 -23.91904 -23.44768 -23.03186 -20.40915 -20.05712 -19.40127 -18.48282 -18.09399 -17.56921 -17.23411 -16.55588 -16.29121 -16.11464 -16.07440 -15.62727 -15.20570 -14.98012 -14.72898 -14.54269 -14.41374 -14.10708 -14.05207 -13.85370 -13.59330 -13.32101 -13.11742 -13.08921 -13.00922 -12.95561 -12.84424 -12.64867 -12.61282 -12.60700 -12.38819 -12.14668 -11.99170 -11.94186 -11.92700 -11.58205 -11.51339 -10.91450 -10.65491 -10.48386 -10.16625 -9.60428 -8.18846 -5.93089 -0.90288 -0.29441 0.16562 1.04708 1.51578 1.53936 1.65012 2.26911 2.46383 2.68585 2.74093 2.92064 3.17940 3.39840 3.62174 3.69722 3.78664 3.89949 3.92790 4.15513 4.25542 4.34835 4.39797 4.45764 4.68167 4.71068 4.71387 4.72297 4.76891 4.80375 4.89695 4.93330 4.94262 4.95885 4.98213 5.04158 5.08534 5.23421 5.28532 5.32206 5.37916 5.49281 5.60270 5.62062 5.92279 6.29073 6.50269 7.08955 7.45548 8.84083 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.003742 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.095145 B = 7481.003264 C = 8126.429715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.109 3.891 3 N -0.850 5.850 4 C -0.304 4.304 5 H 0.095 0.905 6 C -0.002 4.002 7 N -0.890 5.890 8 Si 0.977 3.023 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.255 1.255 12 S 2.628 3.372 13 O -1.002 7.002 14 O -1.019 7.019 15 C -0.631 4.631 16 C -0.043 4.043 17 C -0.090 4.090 18 C -0.129 4.129 19 C 0.407 3.593 20 O -0.472 6.472 21 C -0.105 4.105 22 C -0.131 4.131 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.090 4.090 26 C -0.043 4.043 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.270 0.730 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.187 0.813 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.877 12.205 6.091 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.018 4.018 3 N -0.682 5.682 4 C -0.440 4.440 5 H 0.113 0.887 6 C -0.207 4.207 7 N -0.530 5.530 8 Si 0.800 3.200 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.179 1.179 12 S 2.730 3.270 13 O -0.992 6.992 14 O -1.009 7.009 15 C -0.719 4.719 16 C -0.063 4.063 17 C -0.109 4.109 18 C -0.130 4.130 19 C 0.285 3.715 20 O -0.348 6.348 21 C -0.106 4.106 22 C -0.189 4.189 23 C -0.209 4.209 24 C -0.210 4.210 25 C -0.108 4.108 26 C -0.062 4.062 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.203 0.797 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.413 11.759 6.893 19.123 hybrid contribution -0.166 -0.267 -0.620 0.696 sum -13.579 11.491 6.272 18.862 Atomic orbital electron populations 1.22132 0.95787 1.01982 1.01573 1.21348 0.93923 0.83198 1.03339 1.52670 1.77248 1.21275 1.16994 1.19359 1.43560 0.95498 0.85547 0.88704 1.26197 0.94129 0.97115 1.03283 1.70108 1.32977 1.18747 1.31147 0.85201 0.79326 0.77989 0.77481 1.20317 1.20611 1.17922 1.04504 0.74690 0.73527 0.74276 1.93393 1.61114 1.60312 1.84407 1.93379 1.84432 1.57393 1.65680 1.31156 1.22480 1.07307 1.10971 1.20971 0.92324 0.99997 0.92967 1.21626 0.96325 0.94314 0.98610 1.20974 0.97254 0.95230 0.99518 1.23038 0.82836 0.91188 0.74414 1.90498 1.44353 1.68057 1.31880 1.21130 0.99306 0.90803 0.99379 1.21734 0.94811 1.02381 0.99926 1.22174 0.96083 1.01157 1.01466 1.22158 1.03069 1.04878 0.90893 1.22268 0.91857 1.01613 0.95060 1.21180 0.97187 0.92015 0.95839 0.93270 0.92730 0.90696 0.89035 0.92677 0.92078 0.83802 0.83310 0.93007 0.89336 0.92967 0.90649 0.88672 0.92665 0.92240 0.88413 0.91053 0.79672 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 10.22 71.98 0.74 -4.86 16 2 C 0.11 4.86 6.00 86.38 0.52 5.37 16 3 N -0.85 -40.86 2.83 -343.46 -0.97 -41.83 16 4 C -0.30 -15.28 8.87 84.03 0.75 -14.53 16 5 H 0.10 4.53 7.93 -2.91 -0.02 4.51 16 6 C 0.00 -0.12 4.96 84.86 0.42 0.30 16 7 N -0.89 -47.46 11.40 21.65 0.25 -47.22 16 8 Si 0.98 39.22 29.61 68.60 2.03 41.25 16 9 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 12 S 2.63 120.73 5.65 -56.49 -0.32 120.41 16 13 O -1.00 -51.22 16.48 -128.00 -2.11 -53.33 16 14 O -1.02 -50.02 15.83 -128.00 -2.03 -52.05 16 15 C -0.63 -22.87 5.98 22.35 0.13 -22.74 16 16 C -0.04 -1.40 8.29 22.23 0.18 -1.22 16 17 C -0.09 -2.53 9.60 22.58 0.22 -2.31 16 18 C -0.13 -3.25 5.69 -20.15 -0.11 -3.37 16 19 C 0.41 9.32 5.94 28.03 0.17 9.49 16 20 O -0.47 -13.32 15.99 -2.97 -0.05 -13.37 16 21 C -0.11 -1.63 0.75 -52.93 -0.04 -1.67 16 22 C -0.13 -1.89 7.77 71.98 0.56 -1.33 16 23 C -0.15 -1.87 8.08 71.98 0.58 -1.29 16 24 C -0.15 -1.93 8.18 71.98 0.59 -1.34 16 25 C -0.09 -2.12 7.24 22.58 0.16 -1.96 16 26 C -0.04 -1.33 9.50 22.23 0.21 -1.12 16 27 H 0.05 1.63 6.88 -2.39 -0.02 1.61 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.09 4.51 5.43 -2.39 -0.01 4.50 16 31 H 0.05 2.45 6.93 -2.39 -0.02 2.43 16 32 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 33 H 0.14 4.51 7.60 -2.91 -0.02 4.49 16 34 H 0.15 3.76 7.66 -2.91 -0.02 3.74 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.86 8.05 -2.38 -0.02 0.84 16 38 H 0.07 0.92 4.89 -2.39 -0.01 0.90 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.07 0.95 4.95 -2.39 -0.01 0.93 16 44 H 0.19 2.93 3.56 -2.91 -0.01 2.92 16 45 H 0.15 4.47 7.60 -2.91 -0.02 4.44 16 Total: -1.00 -68.36 371.10 2.88 -65.48 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.01 Total: 23.24 kcal Atomic # 6 Polarization: -47.64 SS G_CDS: 5.07 Total: -42.57 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -0.72 Total: -89.05 kcal Atomic # 8 Polarization: -114.57 SS G_CDS: -4.18 Total: -118.75 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Atomic # 16 Polarization: 120.73 SS G_CDS: -0.32 Total: 120.41 kcal Total: -68.36 2.88 -65.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749172056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.878 kcal (2) G-P(sol) polarization free energy of solvation -68.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds