Wall clock time and date at job start Tue Mar 31 2020 22:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47064 * 2 1 4 4 C 1.50703 * 109.46809 * 240.00268 * 2 1 3 5 5 H 1.07995 * 120.00174 * 239.99596 * 4 2 1 6 6 C 1.37878 * 120.00028 * 60.00139 * 4 2 1 7 7 N 1.31516 * 120.00020 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00068 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46780 * 89.99831 * 8 6 4 10 10 H 1.48497 * 109.46908 * 209.99634 * 8 6 4 11 11 H 1.48495 * 109.46847 * 330.00163 * 8 6 4 12 12 N 1.46496 * 109.47581 * 120.00279 * 2 1 3 13 13 S 1.65597 * 120.00033 * 265.00212 * 12 2 1 14 14 O 1.42103 * 106.40403 * 178.53808 * 13 12 2 15 15 O 1.42097 * 106.40203 * 311.45313 * 13 12 2 16 16 C 1.76198 * 107.21978 * 64.99807 * 13 12 2 17 17 C 1.38402 * 119.82108 * 269.72334 * 16 13 12 18 18 C 1.37889 * 120.16907 * 179.76750 * 17 16 13 19 19 C 1.39850 * 119.82272 * 0.52805 * 18 17 16 20 20 C 1.47172 * 120.17060 * 179.70553 * 19 18 17 21 21 O 1.21254 * 120.00223 * 173.97802 * 20 19 18 22 22 C 1.50697 * 120.00006 * 353.97668 * 20 19 18 23 23 C 1.52999 * 109.47252 * 184.91518 * 22 20 19 24 24 C 1.53000 * 109.47204 * 304.91351 * 22 20 19 25 25 C 1.52998 * 109.47167 * 64.91340 * 22 20 19 26 26 C 1.39849 * 119.65990 * 359.72913 * 19 18 17 27 27 C 1.37882 * 119.82227 * 359.97438 * 26 19 18 28 28 H 1.09009 * 109.46787 * 299.99655 * 1 2 3 29 29 H 1.08996 * 109.47490 * 59.99532 * 1 2 3 30 30 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 31 31 H 0.96992 * 120.00178 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00008 * 84.99812 * 12 2 1 33 33 H 1.08002 * 119.91801 * 359.97438 * 17 16 13 34 34 H 1.08005 * 120.08808 * 180.23586 * 18 17 16 35 35 H 1.09000 * 109.47222 * 60.00125 * 23 22 20 36 36 H 1.09001 * 109.47500 * 180.02562 * 23 22 20 37 37 H 1.08995 * 109.47336 * 299.99835 * 23 22 20 38 38 H 1.09001 * 109.47482 * 65.30088 * 24 22 20 39 39 H 1.09006 * 109.47284 * 185.30090 * 24 22 20 40 40 H 1.09003 * 109.47564 * 305.30080 * 24 22 20 41 41 H 1.09000 * 109.47234 * 55.10887 * 25 22 20 42 42 H 1.09000 * 109.46924 * 175.10646 * 25 22 20 43 43 H 1.09000 * 109.47032 * 295.10420 * 25 22 20 44 44 H 1.08000 * 120.08642 * 179.97438 * 26 19 18 45 45 H 1.08002 * 119.91329 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1614 -4.4125 10 1 2.4869 -0.1400 -5.1121 11 1 3.6305 -1.7564 -3.7121 12 7 2.0184 -0.6906 1.1961 13 16 2.4122 0.1771 2.5504 14 8 2.8125 -0.7699 3.5314 15 8 3.2437 1.2442 2.1155 16 6 0.9276 0.9146 3.1474 17 6 0.5577 2.1727 2.7049 18 6 -0.6052 2.7545 3.1637 19 6 -1.4057 2.0746 4.0871 20 6 -2.6451 2.6912 4.5868 21 8 -3.3922 2.0576 5.3014 22 6 -2.9856 4.1102 4.2105 23 6 -4.2503 4.5454 4.9535 24 6 -1.8261 5.0318 4.5942 25 6 -3.2261 4.1941 2.7019 26 6 -1.0223 0.8060 4.5335 27 6 0.1402 0.2350 4.0605 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7080 1.1610 -3.4843 32 1 2.1110 -1.6562 1.1947 33 1 1.1797 2.6986 1.9957 34 1 -0.8945 3.7348 2.8146 35 1 -4.0789 4.4857 6.0283 36 1 -4.4969 5.5716 4.6811 37 1 -5.0763 3.8889 4.6803 38 1 -0.9500 4.7821 3.9957 39 1 -2.1091 6.0681 4.4091 40 1 -1.5931 4.9021 5.6511 41 1 -3.9928 3.4742 2.4156 42 1 -3.5567 5.1997 2.4421 43 1 -2.3000 3.9682 2.1733 44 1 -1.6352 0.2749 5.2468 45 1 0.4379 -0.7445 4.4046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749177759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:03 Heat of formation + Delta-G solvation = -108.837661 kcal Electronic energy + Delta-G solvation = -28061.456905 eV Core-core repulsion = 24170.287684 eV Total energy + Delta-G solvation = -3891.169221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72293 -39.51915 -38.35234 -37.26007 -36.99500 -36.94087 -34.11579 -32.76719 -32.24750 -30.11688 -28.25542 -28.16907 -27.23226 -26.46691 -23.95122 -23.15630 -22.79079 -20.58944 -20.06984 -19.24429 -18.87074 -17.85244 -17.55499 -17.31857 -16.97931 -16.34185 -16.15389 -16.09281 -15.63679 -15.36187 -15.01771 -14.70166 -14.53133 -14.39817 -14.10620 -14.02961 -13.85889 -13.51412 -13.33698 -13.22536 -13.13482 -13.12433 -13.01348 -12.97529 -12.80387 -12.65954 -12.45603 -12.42136 -12.22187 -12.07420 -11.97362 -11.92853 -11.54505 -11.12033 -10.69624 -10.58005 -10.53340 -10.17440 -10.08030 -8.12892 -6.25693 -0.95219 -0.51674 0.16607 1.02252 1.46232 1.48591 1.57432 2.09819 2.42289 2.47137 2.72050 2.78917 3.17304 3.28667 3.59201 3.63993 3.76325 3.88652 3.91894 4.13281 4.21171 4.33366 4.45502 4.53496 4.67070 4.70667 4.76355 4.79384 4.88949 4.89384 4.92086 4.93734 4.94187 5.02670 5.03707 5.07248 5.15579 5.23075 5.31112 5.38370 5.60214 5.61272 5.78413 6.05137 6.12751 6.27685 6.41624 6.83455 7.43290 8.92310 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.003558 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.311501 B = 7868.112916 C = 9130.641850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.273 3.727 3 H 0.029 0.971 4 C -0.543 4.543 5 H 0.064 0.936 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.272 1.272 12 N -1.098 6.098 13 S 2.701 3.299 14 O -0.987 6.987 15 O -0.989 6.989 16 C -0.647 4.647 17 C -0.040 4.040 18 C -0.095 4.095 19 C -0.123 4.123 20 C 0.406 3.594 21 O -0.471 6.471 22 C -0.106 4.106 23 C -0.131 4.131 24 C -0.152 4.152 25 C -0.152 4.152 26 C -0.092 4.092 27 C -0.035 4.035 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.266 0.734 32 H 0.418 0.582 33 H 0.147 0.853 34 H 0.181 0.819 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.151 0.849 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 8.051 12.382 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.167 3.833 3 H 0.047 0.953 4 C -0.583 4.583 5 H 0.082 0.918 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.859 5.859 13 S 2.792 3.208 14 O -0.977 6.977 15 O -0.979 6.979 16 C -0.735 4.735 17 C -0.059 4.059 18 C -0.113 4.113 19 C -0.124 4.124 20 C 0.284 3.716 21 O -0.346 6.346 22 C -0.107 4.107 23 C -0.188 4.188 24 C -0.209 4.209 25 C -0.208 4.208 26 C -0.111 4.111 27 C -0.054 4.054 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.253 0.747 33 H 0.165 0.835 34 H 0.198 0.802 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.168 0.832 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.282 8.120 12.994 17.418 hybrid contribution -0.272 -0.942 -0.932 1.353 sum -8.554 7.178 12.063 16.438 Atomic orbital electron populations 1.22133 0.97555 1.00134 1.00938 1.18368 0.91402 0.91963 0.81533 0.95278 1.21586 1.32147 1.13452 0.91123 0.91822 1.25594 0.95091 0.95677 1.01557 1.69946 1.36868 1.23465 1.24525 0.85561 0.78777 0.78319 0.78989 1.20010 1.20896 1.19682 1.55340 1.83887 1.19637 1.27082 1.01309 0.74199 0.72996 0.72253 1.93513 1.81940 1.62211 1.60084 1.93536 1.64984 1.57454 1.81928 1.31101 1.23745 1.07392 1.11263 1.21172 0.96269 0.92454 0.95982 1.22262 0.92705 1.01355 0.94996 1.20982 0.97056 0.95804 0.98601 1.23028 0.82657 0.90016 0.75875 1.90497 1.49035 1.64955 1.30158 1.21134 0.99111 0.91558 0.98905 1.21727 0.95009 1.02379 0.99715 1.22175 0.96404 1.00110 1.02208 1.22131 1.03030 1.04454 0.91235 1.21667 0.95971 0.94389 0.99111 1.21057 0.92431 0.99674 0.92234 0.94505 0.90944 0.94571 0.92483 0.74686 0.83517 0.80216 0.92798 0.89432 0.93047 0.90665 0.88843 0.92343 0.92755 0.88671 0.90899 0.83176 0.82522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.35 9.29 71.98 0.67 -5.69 16 2 C 0.27 12.52 2.89 44.25 0.13 12.65 16 3 H 0.03 1.48 7.50 -2.39 -0.02 1.46 16 4 C -0.54 -27.79 8.76 25.60 0.22 -27.56 16 5 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 6 C 0.02 1.11 5.30 84.65 0.45 1.55 16 7 N -0.91 -48.08 11.32 21.45 0.24 -47.83 16 8 Si 0.96 41.14 29.54 68.60 2.03 43.17 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 N -1.10 -42.36 5.46 -172.53 -0.94 -43.30 16 13 S 2.70 97.50 5.71 -56.49 -0.32 97.18 16 14 O -0.99 -36.87 17.26 -128.00 -2.21 -39.08 16 15 O -0.99 -41.78 16.60 -128.00 -2.12 -43.91 16 16 C -0.65 -19.89 5.06 22.35 0.11 -19.78 16 17 C -0.04 -1.13 8.58 22.23 0.19 -0.94 16 18 C -0.10 -2.19 7.46 22.58 0.17 -2.02 16 19 C -0.12 -2.97 5.69 -20.15 -0.11 -3.08 16 20 C 0.41 9.19 5.95 28.03 0.17 9.35 16 21 O -0.47 -13.05 15.99 -2.95 -0.05 -13.10 16 22 C -0.11 -1.70 0.75 -52.93 -0.04 -1.74 16 23 C -0.13 -1.95 7.78 71.98 0.56 -1.39 16 24 C -0.15 -1.91 8.09 71.98 0.58 -1.33 16 25 C -0.15 -2.18 8.20 71.98 0.59 -1.59 16 26 C -0.09 -2.34 9.60 22.58 0.22 -2.12 16 27 C -0.03 -0.95 9.50 22.22 0.21 -0.73 16 28 H 0.04 1.36 6.18 -2.38 -0.01 1.34 16 29 H 0.07 3.46 6.07 -2.39 -0.01 3.45 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 32 H 0.42 14.58 8.83 -96.74 -0.85 13.72 16 33 H 0.15 4.23 7.59 -2.91 -0.02 4.20 16 34 H 0.18 3.02 3.34 -2.91 -0.01 3.01 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.88 8.05 -2.39 -0.02 0.86 16 38 H 0.07 0.94 4.82 -2.39 -0.01 0.93 16 39 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.07 5.02 -2.39 -0.01 1.06 16 44 H 0.15 3.39 7.66 -2.91 -0.02 3.37 16 45 H 0.16 3.76 7.60 -2.91 -0.02 3.73 16 Total: -1.00 -65.73 371.88 0.91 -64.82 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.17 Total: 26.47 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 4.12 Total: -44.41 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -0.70 Total: -91.13 kcal Atomic # 8 Polarization: -91.71 SS G_CDS: -4.38 Total: -96.09 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 97.50 SS G_CDS: -0.32 Total: 97.18 kcal Total: -65.73 0.91 -64.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749177759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.021 kcal (2) G-P(sol) polarization free energy of solvation -65.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds