Wall clock time and date at job start Tue Mar 31 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46864 * 2 1 4 4 C 1.50699 * 109.47386 * 120.00113 * 2 1 3 5 5 H 1.07997 * 119.99615 * 119.99422 * 4 2 1 6 6 C 1.37871 * 120.00089 * 300.00240 * 4 2 1 7 7 N 1.31522 * 119.99968 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00318 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47057 * 270.00087 * 8 6 4 10 10 H 1.48508 * 109.46764 * 30.00048 * 8 6 4 11 11 H 1.48504 * 109.47217 * 149.99654 * 8 6 4 12 12 N 1.46501 * 109.47009 * 240.00357 * 2 1 3 13 13 S 1.65605 * 120.00056 * 95.00051 * 12 2 1 14 14 O 1.42100 * 106.39812 * 178.54028 * 13 12 2 15 15 O 1.42097 * 106.40102 * 311.45917 * 13 12 2 16 16 C 1.76194 * 107.21612 * 65.00077 * 13 12 2 17 17 C 1.38408 * 119.82393 * 269.72020 * 16 13 12 18 18 C 1.37889 * 120.17153 * 179.77138 * 17 16 13 19 19 C 1.39857 * 119.82258 * 0.52537 * 18 17 16 20 20 C 1.47169 * 120.17015 * 179.70317 * 19 18 17 21 21 O 1.21249 * 119.99836 * 173.97986 * 20 19 18 22 22 C 1.50704 * 119.99884 * 353.98380 * 20 19 18 23 23 C 1.52996 * 109.46946 * 184.91363 * 22 20 19 24 24 C 1.53001 * 109.46853 * 304.90886 * 22 20 19 25 25 C 1.52999 * 109.47210 * 64.91202 * 22 20 19 26 26 C 1.39850 * 119.65851 * 359.73627 * 19 18 17 27 27 C 1.37887 * 119.82292 * 359.97438 * 26 19 18 28 28 H 1.09001 * 109.47091 * 299.99806 * 1 2 3 29 29 H 1.09008 * 109.47108 * 59.99590 * 1 2 3 30 30 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00314 * 179.97438 * 7 6 4 32 32 H 0.97001 * 120.00077 * 274.99681 * 12 2 1 33 33 H 1.07996 * 119.91234 * 0.02562 * 17 16 13 34 34 H 1.08003 * 120.08511 * 180.23776 * 18 17 16 35 35 H 1.08994 * 109.47875 * 59.99415 * 23 22 20 36 36 H 1.08997 * 109.47351 * 180.02562 * 23 22 20 37 37 H 1.09003 * 109.46927 * 299.99719 * 23 22 20 38 38 H 1.09003 * 109.46987 * 65.30550 * 24 22 20 39 39 H 1.09002 * 109.46992 * 185.30375 * 24 22 20 40 40 H 1.08994 * 109.47387 * 305.30116 * 24 22 20 41 41 H 1.08994 * 109.47195 * 55.10546 * 25 22 20 42 42 H 1.08996 * 109.47273 * 175.10732 * 25 22 20 43 43 H 1.09001 * 109.46736 * 295.10259 * 25 22 20 44 44 H 1.08002 * 120.09165 * 179.97438 * 26 19 18 45 45 H 1.08007 * 119.91362 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 1.3429 -2.1618 4.4117 10 1 3.6295 -1.7584 3.7120 11 1 2.4867 -0.1414 5.1122 12 7 2.0183 -0.6905 -1.1962 13 16 2.4121 0.1773 -2.5505 14 8 2.8775 -0.7633 -3.5085 15 8 1.3246 1.0594 -2.7922 16 6 3.7927 1.1910 -2.1371 17 6 3.5861 2.4649 -1.6369 18 6 4.6613 3.2625 -1.3066 19 6 5.9632 2.7853 -1.4886 20 6 7.1164 3.6326 -1.1447 21 8 8.2396 3.1793 -1.1998 22 6 6.9011 5.0637 -0.7241 23 6 8.2558 5.7514 -0.5435 24 6 6.0968 5.7960 -1.8002 25 6 6.1321 5.0964 0.5982 26 6 6.1637 1.4991 -1.9997 27 6 5.0781 0.7114 -2.3196 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7089 1.1613 3.4844 32 1 2.1110 -1.6561 -1.1950 33 1 2.5801 2.8335 -1.5011 34 1 4.4984 4.2549 -0.9127 35 1 8.8037 5.7281 -1.4855 36 1 8.1001 6.7863 -0.2389 37 1 8.8288 5.2297 0.2230 38 1 5.0974 5.3653 -1.8629 39 1 6.0217 6.8523 -1.5417 40 1 6.5983 5.6922 -2.7623 41 1 6.6625 4.5016 1.3417 42 1 6.0520 6.1261 0.9465 43 1 5.1340 4.6850 0.4483 44 1 7.1661 1.1237 -2.1435 45 1 5.2312 -0.2823 -2.7140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749177763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:08 Heat of formation + Delta-G solvation = -90.178019 kcal Electronic energy + Delta-G solvation = -28095.516738 eV Core-core repulsion = 24205.156660 eV Total energy + Delta-G solvation = -3890.360078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69961 -38.37343 -36.82511 -36.13926 -35.50890 -35.39560 -32.26646 -31.63301 -31.10196 -28.34371 -27.58582 -27.44555 -25.42355 -25.26781 -22.85727 -22.09752 -21.01269 -19.18940 -19.08846 -17.73942 -17.31398 -16.59945 -16.19296 -16.11856 -15.36409 -15.16299 -15.13989 -14.84883 -14.37636 -14.00623 -13.79907 -13.65612 -13.22398 -13.16381 -12.71899 -12.64818 -12.51922 -12.47579 -12.33917 -12.24565 -11.95615 -11.77934 -11.70703 -11.61910 -11.37278 -11.21246 -11.20499 -11.04420 -10.88991 -10.62377 -10.61365 -10.35240 -10.17730 -9.70645 -9.35816 -9.26064 -9.02614 -8.69856 -8.37577 -6.20213 -4.28378 0.22486 0.93549 1.31292 2.10307 3.20078 3.27497 3.29702 3.44298 3.65400 3.72091 4.20513 4.29372 4.40795 4.51566 4.61134 4.67057 4.82733 4.91615 5.11918 5.15367 5.26442 5.31256 5.34812 5.43349 5.47912 5.56539 5.58238 5.59903 5.70772 5.85101 5.92568 5.97467 6.00896 6.05697 6.12202 6.21466 6.24180 6.74216 6.76488 6.98457 7.02646 7.27920 7.51176 7.63724 7.73395 7.96640 8.19970 8.74791 9.38500 10.85305 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.004343 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.707804 B = 6445.521113 C = 8058.042142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.274 3.726 3 H 0.041 0.959 4 C -0.527 4.527 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -1.097 6.097 13 S 2.686 3.314 14 O -0.979 6.979 15 O -0.959 6.959 16 C -0.637 4.637 17 C -0.025 4.025 18 C -0.106 4.106 19 C -0.121 4.121 20 C 0.406 3.594 21 O -0.445 6.445 22 C -0.110 4.110 23 C -0.132 4.132 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.088 4.088 27 C -0.030 4.030 28 H 0.092 0.908 29 H 0.026 0.974 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.411 0.589 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.138 0.862 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 8.805 -6.381 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.170 3.830 3 H 0.059 0.941 4 C -0.566 4.566 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.859 5.859 13 S 2.774 3.226 14 O -0.969 6.969 15 O -0.948 6.948 16 C -0.722 4.722 17 C -0.044 4.044 18 C -0.125 4.125 19 C -0.122 4.122 20 C 0.283 3.717 21 O -0.319 6.319 22 C -0.110 4.110 23 C -0.190 4.190 24 C -0.209 4.209 25 C -0.208 4.208 26 C -0.107 4.107 27 C -0.049 4.049 28 H 0.111 0.889 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.245 0.755 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.156 0.844 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.854 8.886 -7.067 14.398 hybrid contribution 0.884 -0.605 1.495 1.839 sum 9.738 8.281 -5.573 13.945 Atomic orbital electron populations 1.22247 0.97946 1.00087 1.01557 1.18563 0.91531 0.92112 0.80802 0.94103 1.21285 1.32068 1.13285 0.89981 0.91757 1.24892 0.94796 0.94973 0.99020 1.69869 1.36027 1.22527 1.23969 0.86499 0.79291 0.79409 0.82249 1.20470 1.19870 1.21104 1.55562 1.80545 1.18504 1.31268 1.02058 0.73835 0.73556 0.73181 1.93532 1.82445 1.61508 1.59416 1.93575 1.50103 1.66998 1.84174 1.31497 1.17217 1.10561 1.12946 1.21024 1.00420 0.91505 0.91441 1.21986 0.91402 1.00699 0.98372 1.20694 0.94757 0.95669 1.01112 1.22589 0.87612 0.89196 0.72343 1.90497 1.26092 1.75178 1.40167 1.21085 0.98628 0.93338 0.97992 1.21717 0.94639 0.99949 1.02658 1.22137 1.00469 1.00784 0.97471 1.22091 1.00687 1.03317 0.94678 1.21451 0.99768 0.92770 0.96733 1.20877 0.90625 0.99595 0.93837 0.88919 0.95502 0.94820 0.92535 0.75507 0.83333 0.83058 0.92210 0.91796 0.91929 0.90661 0.91110 0.92127 0.91849 0.90984 0.90658 0.84378 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.29 37.16 0.35 -3.30 16 2 C 0.27 6.24 2.76 -69.08 -0.19 6.05 16 3 H 0.04 0.96 7.24 -51.93 -0.38 0.59 16 4 C -0.53 -13.10 8.76 -34.44 -0.30 -13.40 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.16 11.32 55.43 0.63 -22.53 16 8 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 N -1.10 -21.05 5.46 -5.88 -0.03 -21.08 16 13 S 2.69 48.23 5.65 -107.50 -0.61 47.62 16 14 O -0.98 -18.43 17.26 -57.17 -0.99 -19.41 16 15 O -0.96 -19.20 16.52 -57.17 -0.94 -20.14 16 16 C -0.64 -10.48 5.82 -39.46 -0.23 -10.71 16 17 C -0.02 -0.38 8.89 -39.65 -0.35 -0.74 16 18 C -0.11 -1.41 7.46 -39.10 -0.29 -1.71 16 19 C -0.12 -1.68 5.70 -105.06 -0.60 -2.27 16 20 C 0.41 5.26 5.95 -30.68 -0.18 5.07 16 21 O -0.45 -6.75 15.99 5.58 0.09 -6.66 16 22 C -0.11 -1.09 0.75 -155.66 -0.12 -1.20 16 23 C -0.13 -1.21 7.78 37.16 0.29 -0.92 16 24 C -0.15 -1.25 8.09 37.16 0.30 -0.95 16 25 C -0.15 -1.42 8.21 37.16 0.30 -1.12 16 26 C -0.09 -1.26 9.60 -39.11 -0.38 -1.64 16 27 C -0.03 -0.46 9.50 -39.65 -0.38 -0.83 16 28 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 29 H 0.03 0.58 7.64 -51.92 -0.40 0.18 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.41 7.15 8.83 -34.47 -0.30 6.85 16 33 H 0.15 2.21 7.59 -52.49 -0.40 1.81 16 34 H 0.15 1.58 3.34 -52.48 -0.18 1.41 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 38 H 0.07 0.62 4.82 -51.93 -0.25 0.37 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.73 5.02 -51.93 -0.26 0.47 16 44 H 0.14 1.78 7.66 -52.49 -0.40 1.37 16 45 H 0.14 1.93 7.60 -52.48 -0.40 1.53 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -30.65 373.87 -9.31 -39.96 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.20 Total: 7.77 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -1.87 Total: -26.08 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.60 Total: -43.61 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -1.84 Total: -46.22 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 48.23 SS G_CDS: -0.61 Total: 47.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.65 -9.31 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749177763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.221 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds