Wall clock time and date at job start Tue Mar 31 2020 23:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00305 * 2 1 4 4 O 1.21558 * 119.99356 * 359.97438 * 3 2 1 5 5 C 1.47843 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.39576 * 120.14192 * 180.02562 * 5 3 2 7 7 C 1.37956 * 119.85134 * 180.02562 * 6 5 3 8 8 C 1.38363 * 120.14422 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.85217 * 179.97438 * 8 7 6 10 10 O 1.45194 * 109.47251 * 89.99697 * 9 8 7 11 11 C 1.34780 * 117.00005 * 179.97438 * 10 9 8 12 12 O 1.21504 * 120.00167 * 0.02562 * 11 10 9 13 13 C 1.47511 * 119.99775 * 180.02562 * 11 10 9 14 14 C 1.40067 * 119.90098 * 359.73445 * 13 11 10 15 15 C 1.36298 * 120.09884 * 179.71590 * 14 13 11 16 16 C 1.40898 * 119.89697 * 0.55482 * 15 14 13 17 17 C 1.41099 * 120.09683 * 179.69813 * 16 15 14 18 18 H 1.08002 * 119.99622 * 204.65654 * 17 16 15 19 19 C 1.40237 * 120.00287 * 24.65773 * 17 16 15 20 20 N 1.30646 * 119.99931 * 17.87819 * 19 17 16 21 21 Si 1.86800 * 120.00270 * 197.87760 * 19 17 16 22 22 H 1.48499 * 109.46907 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47098 * 120.00002 * 21 19 17 24 24 H 1.48497 * 109.47116 * 239.99680 * 21 19 17 25 25 C 1.40901 * 119.80575 * 359.71245 * 16 15 14 26 26 C 1.36297 * 119.89482 * 0.02562 * 25 16 15 27 27 C 1.38356 * 120.29257 * 0.23618 * 8 7 6 28 28 C 1.37960 * 120.14482 * 359.48508 * 27 8 7 29 29 H 1.09002 * 109.46477 * 60.00059 * 1 2 3 30 30 H 1.09000 * 109.47495 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47108 * 300.00274 * 1 2 3 32 32 H 0.96999 * 119.99485 * 180.02562 * 2 1 3 33 33 H 1.08001 * 120.07597 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.92885 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47007 * 210.00329 * 9 8 7 36 36 H 1.09001 * 109.47263 * 330.00047 * 9 8 7 37 37 H 1.08001 * 119.94641 * 359.97438 * 14 13 11 38 38 H 1.08000 * 120.05007 * 180.27396 * 15 14 13 39 39 H 0.96994 * 119.99447 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.05298 * 179.97438 * 25 16 15 41 41 H 1.07998 * 119.94900 * 179.97438 * 26 25 16 42 42 H 1.07995 * 119.92543 * 179.74508 * 27 8 7 43 43 H 1.07999 * 120.07461 * 180.24929 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5311 2.2198 -0.0005 5 6 3.6174 1.1671 0.0006 6 6 4.3183 2.3741 0.0011 7 6 5.6979 2.3671 0.0011 8 6 6.3866 1.1670 0.0000 9 6 7.8936 1.1670 -0.0005 10 8 8.3781 1.1662 1.3682 11 6 9.7144 1.1655 1.5442 12 8 10.4542 1.1661 0.5803 13 6 10.2787 1.1640 2.9071 14 6 9.4240 1.1690 4.0167 15 6 9.9410 1.1618 5.2778 16 6 11.3376 1.1612 5.4643 17 6 11.8774 1.1603 6.7679 18 1 12.8695 1.5501 6.9419 19 6 11.1257 0.6532 7.8378 20 7 10.1005 -0.1227 7.6060 21 14 11.5904 1.0870 9.5943 22 1 12.7808 1.9747 9.5865 23 1 10.4556 1.7871 10.2480 24 1 11.9037 -0.1556 10.3447 25 6 12.1936 1.1620 4.3451 26 6 11.6677 1.1637 3.0877 27 6 5.6978 -0.0329 -0.0060 28 6 4.3183 -0.0399 -0.0002 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9499 -0.8401 -0.0004 33 1 3.7819 3.3115 0.0007 34 1 6.2415 3.3003 0.0011 35 1 8.2567 0.2774 -0.5152 36 1 8.2567 2.0573 -0.5139 37 1 8.3536 1.1742 3.8728 38 1 9.2812 1.1611 6.1329 39 1 9.5804 -0.4730 8.3459 40 1 13.2646 1.1620 4.4834 41 1 12.3230 1.1647 2.2292 42 1 6.2414 -0.9661 -0.0109 43 1 3.7818 -0.9772 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758687529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:36 Heat of formation + Delta-G solvation = -85.095671 kcal Electronic energy + Delta-G solvation = -26818.566877 eV Core-core repulsion = 22792.983235 eV Total energy + Delta-G solvation = -4025.583642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49665 -39.68394 -38.60631 -37.45017 -35.68863 -35.02760 -33.98383 -32.46553 -31.24306 -30.37460 -29.54100 -28.13641 -26.54060 -25.67604 -23.02748 -22.71938 -22.06076 -20.99510 -20.58991 -19.99262 -18.57119 -17.59928 -16.97050 -16.64720 -16.49021 -15.76798 -15.56229 -15.53572 -15.22138 -15.08927 -14.70145 -14.08793 -13.86440 -13.64300 -13.54298 -13.39353 -13.08924 -12.78299 -12.70894 -12.62071 -12.49618 -12.15838 -11.96612 -11.58724 -11.46007 -11.32996 -11.31946 -11.01647 -10.73663 -10.29971 -10.24201 -10.16142 -9.67947 -9.58509 -9.51761 -9.41403 -9.22701 -9.03681 -7.79132 -7.67669 -7.13294 -4.71115 0.49432 1.14260 2.01088 2.50738 2.82800 2.83692 2.90737 2.96257 2.99870 3.32115 3.58771 3.68130 3.80895 4.33683 4.42393 4.47668 4.64794 4.71186 4.84780 5.04666 5.10509 5.12631 5.36317 5.40549 5.43159 5.48566 5.56393 5.76861 5.94992 5.95993 6.00644 6.08006 6.17640 6.22713 6.32426 6.60325 6.70944 6.76681 6.95082 6.97455 7.06690 7.08535 7.38111 7.63360 7.74805 7.80319 7.85871 7.97133 8.32089 8.53070 8.65839 8.68558 9.77875 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.002141 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.849000 B =13072.052344 C =14742.592394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.560 3.440 4 O -0.536 6.536 5 C -0.136 4.136 6 C -0.061 4.061 7 C -0.103 4.103 8 C -0.058 4.058 9 C 0.103 3.897 10 O -0.353 6.353 11 C 0.515 3.485 12 O -0.552 6.552 13 C -0.276 4.276 14 C -0.042 4.042 15 C -0.185 4.185 16 C 0.131 3.869 17 C -0.433 4.433 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.763 5.763 21 Si 0.915 3.085 22 H -0.256 1.256 23 H -0.268 1.268 24 H -0.270 1.270 25 C -0.239 4.239 26 C -0.017 4.017 27 C -0.103 4.103 28 C -0.089 4.089 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.289 0.711 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.029 -2.502 -10.131 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.385 5.385 3 C 0.348 3.652 4 O -0.414 6.414 5 C -0.139 4.139 6 C -0.080 4.080 7 C -0.121 4.121 8 C -0.059 4.059 9 C 0.029 3.971 10 O -0.272 6.272 11 C 0.368 3.632 12 O -0.446 6.446 13 C -0.278 4.278 14 C -0.061 4.061 15 C -0.204 4.204 16 C 0.127 3.873 17 C -0.460 4.460 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.385 5.385 21 Si 0.738 3.262 22 H -0.179 1.179 23 H -0.192 1.192 24 H -0.196 1.196 25 C -0.258 4.258 26 C -0.036 4.036 27 C -0.121 4.121 28 C -0.107 4.107 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.508 -1.905 -10.306 17.898 hybrid contribution 0.323 -0.483 0.657 0.878 sum -14.185 -2.389 -9.649 17.321 Atomic orbital electron populations 1.21564 0.79154 1.02381 1.02536 1.45717 1.07958 1.08707 1.76164 1.18350 0.87337 0.83687 0.75852 1.90776 1.69981 1.31175 1.49458 1.19902 0.92410 0.94740 1.06847 1.21249 0.93674 0.97747 0.95281 1.21137 0.93816 0.98121 0.98991 1.19879 0.94420 0.93613 0.97949 1.21653 0.89170 1.03255 0.83058 1.86678 1.25893 1.85588 1.29003 1.21612 0.78857 0.71953 0.90813 1.90700 1.60128 1.50718 1.43097 1.18198 0.93502 1.28401 0.87701 1.20644 0.97517 0.95471 0.92455 1.21013 0.95506 1.08241 0.95644 1.17865 0.91984 0.84832 0.92591 1.19966 1.01990 1.32479 0.91528 0.89400 1.26172 0.93726 0.92460 1.02676 1.69751 1.13740 1.19570 1.35450 0.86129 0.80190 0.79630 0.80214 1.17944 1.19242 1.19550 1.20682 0.98239 1.14923 0.91985 1.20348 0.92622 0.94030 0.96613 1.21052 0.93804 0.98086 0.99144 1.21214 0.94363 0.96764 0.98403 0.92080 0.90481 0.91995 0.76269 0.84391 0.84796 0.90557 0.90533 0.88058 0.86045 0.90016 0.88040 0.87932 0.84902 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.73 -5.64 5.66 -68.04 -0.39 -6.02 16 3 C 0.56 6.36 7.77 -12.33 -0.10 6.26 16 4 O -0.54 -7.95 16.35 5.31 0.09 -7.86 16 5 C -0.14 -1.48 5.87 -104.97 -0.62 -2.10 16 6 C -0.06 -0.70 9.60 -39.19 -0.38 -1.07 16 7 C -0.10 -1.19 9.68 -39.64 -0.38 -1.57 16 8 C -0.06 -0.72 5.53 -104.53 -0.58 -1.29 16 9 C 0.10 1.48 5.59 36.01 0.20 1.68 16 10 O -0.35 -6.58 9.43 -40.71 -0.38 -6.96 16 11 C 0.51 11.08 7.89 34.51 0.27 11.35 16 12 O -0.55 -12.53 16.11 -19.27 -0.31 -12.84 16 13 C -0.28 -6.37 5.89 -104.75 -0.62 -6.98 16 14 C -0.04 -0.97 9.55 -39.59 -0.38 -1.35 16 15 C -0.18 -4.54 8.63 -39.27 -0.34 -4.88 16 16 C 0.13 3.27 5.58 -106.80 -0.60 2.67 16 17 C -0.43 -10.47 9.04 -37.75 -0.34 -10.81 16 18 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 19 C 0.07 1.64 5.14 -17.31 -0.09 1.55 16 20 N -0.76 -17.90 10.95 55.56 0.61 -17.29 16 21 Si 0.92 16.78 29.60 -169.99 -5.03 11.75 16 22 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 23 H -0.27 -4.85 7.11 56.52 0.40 -4.44 16 24 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 25 C -0.24 -5.62 9.73 -39.27 -0.38 -6.01 16 26 C -0.02 -0.40 9.52 -39.59 -0.38 -0.78 16 27 C -0.10 -1.09 9.68 -39.64 -0.38 -1.47 16 28 C -0.09 -0.81 9.54 -39.19 -0.37 -1.19 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.40 1.97 6.86 -40.82 -0.28 1.69 16 33 H 0.14 1.53 7.65 -52.49 -0.40 1.12 16 34 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.10 2.16 7.59 -52.49 -0.40 1.76 16 38 H 0.12 3.02 6.15 -52.49 -0.32 2.70 16 39 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 40 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.10 2.23 7.63 -52.49 -0.40 1.83 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.13 0.72 6.41 -52.49 -0.34 0.38 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -30.56 377.61 -9.60 -40.16 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.06 Total: 8.18 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -4.81 Total: -14.80 kcal Atomic # 7 Polarization: -23.54 SS G_CDS: 0.22 Total: -23.31 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.61 Total: -27.66 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.56 -9.60 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758687529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.932 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds