Wall clock time and date at job start Tue Mar 31 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00305 * 2 1 4 4 O 1.21558 * 119.99356 * 359.97438 * 3 2 1 5 5 C 1.47843 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.39576 * 120.14192 * 180.02562 * 5 3 2 7 7 C 1.37956 * 119.85134 * 180.02562 * 6 5 3 8 8 C 1.38363 * 120.14422 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.85217 * 179.97438 * 8 7 6 10 10 O 1.45194 * 109.47251 * 89.99697 * 9 8 7 11 11 C 1.34780 * 117.00005 * 179.97438 * 10 9 8 12 12 O 1.21504 * 120.00167 * 0.02562 * 11 10 9 13 13 C 1.47511 * 119.99775 * 180.02562 * 11 10 9 14 14 C 1.40067 * 119.90098 * 359.73445 * 13 11 10 15 15 C 1.36298 * 120.09884 * 179.71590 * 14 13 11 16 16 C 1.40898 * 119.89697 * 0.55482 * 15 14 13 17 17 C 1.41099 * 120.09683 * 179.69813 * 16 15 14 18 18 H 1.08002 * 119.99622 * 204.65654 * 17 16 15 19 19 C 1.40237 * 120.00287 * 24.65773 * 17 16 15 20 20 N 1.30646 * 119.99931 * 17.87819 * 19 17 16 21 21 Si 1.86800 * 120.00270 * 197.87760 * 19 17 16 22 22 H 1.48499 * 109.46907 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47098 * 120.00002 * 21 19 17 24 24 H 1.48497 * 109.47116 * 239.99680 * 21 19 17 25 25 C 1.40901 * 119.80575 * 359.71245 * 16 15 14 26 26 C 1.36297 * 119.89482 * 0.02562 * 25 16 15 27 27 C 1.38356 * 120.29257 * 0.23618 * 8 7 6 28 28 C 1.37960 * 120.14482 * 359.48508 * 27 8 7 29 29 H 1.09002 * 109.46477 * 60.00059 * 1 2 3 30 30 H 1.09000 * 109.47495 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47108 * 300.00274 * 1 2 3 32 32 H 0.96999 * 119.99485 * 180.02562 * 2 1 3 33 33 H 1.08001 * 120.07597 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.92885 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47007 * 210.00329 * 9 8 7 36 36 H 1.09001 * 109.47263 * 330.00047 * 9 8 7 37 37 H 1.08001 * 119.94641 * 359.97438 * 14 13 11 38 38 H 1.08000 * 120.05007 * 180.27396 * 15 14 13 39 39 H 0.96994 * 119.99447 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.05298 * 179.97438 * 25 16 15 41 41 H 1.07998 * 119.94900 * 179.97438 * 26 25 16 42 42 H 1.07995 * 119.92543 * 179.74508 * 27 8 7 43 43 H 1.07999 * 120.07461 * 180.24929 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5311 2.2198 -0.0005 5 6 3.6174 1.1671 0.0006 6 6 4.3183 2.3741 0.0011 7 6 5.6979 2.3671 0.0011 8 6 6.3866 1.1670 0.0000 9 6 7.8936 1.1670 -0.0005 10 8 8.3781 1.1662 1.3682 11 6 9.7144 1.1655 1.5442 12 8 10.4542 1.1661 0.5803 13 6 10.2787 1.1640 2.9071 14 6 9.4240 1.1690 4.0167 15 6 9.9410 1.1618 5.2778 16 6 11.3376 1.1612 5.4643 17 6 11.8774 1.1603 6.7679 18 1 12.8695 1.5501 6.9419 19 6 11.1257 0.6532 7.8378 20 7 10.1005 -0.1227 7.6060 21 14 11.5904 1.0870 9.5943 22 1 12.7808 1.9747 9.5865 23 1 10.4556 1.7871 10.2480 24 1 11.9037 -0.1556 10.3447 25 6 12.1936 1.1620 4.3451 26 6 11.6677 1.1637 3.0877 27 6 5.6978 -0.0329 -0.0060 28 6 4.3183 -0.0399 -0.0002 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9499 -0.8401 -0.0004 33 1 3.7819 3.3115 0.0007 34 1 6.2415 3.3003 0.0011 35 1 8.2567 0.2774 -0.5152 36 1 8.2567 2.0573 -0.5139 37 1 8.3536 1.1742 3.8728 38 1 9.2812 1.1611 6.1329 39 1 9.5804 -0.4730 8.3459 40 1 13.2646 1.1620 4.4834 41 1 12.3230 1.1647 2.2292 42 1 6.2414 -0.9661 -0.0109 43 1 3.7818 -0.9772 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758687529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:35 Heat of formation + Delta-G solvation = -100.792013 kcal Electronic energy + Delta-G solvation = -26819.247521 eV Core-core repulsion = 22792.983235 eV Total energy + Delta-G solvation = -4026.264287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.47775 -41.11079 -39.63756 -39.13744 -37.24196 -35.80245 -35.74534 -33.46290 -32.14179 -32.06312 -31.37090 -29.10556 -27.94101 -26.79707 -24.29909 -23.71357 -23.23545 -22.80999 -21.67721 -21.42842 -19.40286 -19.34860 -18.60218 -18.01286 -17.55470 -17.16745 -16.97158 -16.33627 -16.31206 -15.94911 -15.76255 -15.72351 -15.25619 -14.94721 -14.64446 -14.42228 -14.24918 -14.07988 -14.02620 -13.91795 -13.65234 -13.40843 -13.21102 -13.12047 -12.88593 -12.67331 -12.64506 -12.38530 -12.17822 -11.81031 -11.62853 -11.43241 -11.28201 -11.18682 -11.13795 -10.33030 -10.05151 -9.92958 -9.62880 -9.52701 -8.85063 -6.54868 -0.40473 0.24390 0.31579 1.14078 1.35746 1.41498 1.54370 1.56449 1.88869 2.09416 2.15199 2.15798 2.68027 2.83465 3.47860 3.62368 3.66667 3.75189 3.90043 4.08770 4.15086 4.31413 4.36290 4.41318 4.44471 4.48616 4.50746 4.60848 4.69759 4.93197 4.93379 4.95407 4.98785 5.12297 5.13575 5.22651 5.24211 5.32499 5.41270 5.43693 5.56270 5.75970 5.82037 5.91517 5.96905 6.15467 6.43079 6.49711 6.70628 6.82385 7.02154 7.10168 8.09771 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.002141 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.849000 B =13072.052344 C =14742.592394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.555 3.445 4 O -0.580 6.580 5 C -0.142 4.142 6 C -0.073 4.073 7 C -0.108 4.108 8 C -0.074 4.074 9 C 0.100 3.900 10 O -0.357 6.357 11 C 0.522 3.478 12 O -0.567 6.567 13 C -0.290 4.290 14 C -0.039 4.039 15 C -0.204 4.204 16 C 0.104 3.896 17 C -0.458 4.458 18 H 0.093 0.907 19 C 0.035 3.965 20 N -0.790 5.790 21 Si 0.990 3.010 22 H -0.254 1.254 23 H -0.262 1.262 24 H -0.262 1.262 25 C -0.249 4.249 26 C -0.022 4.022 27 C -0.105 4.105 28 C -0.076 4.076 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.418 0.582 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.299 0.701 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.151 0.849 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.891 -3.928 -9.811 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.343 3.657 4 O -0.462 6.462 5 C -0.145 4.145 6 C -0.092 4.092 7 C -0.126 4.126 8 C -0.075 4.075 9 C 0.027 3.973 10 O -0.274 6.274 11 C 0.375 3.625 12 O -0.462 6.462 13 C -0.293 4.293 14 C -0.057 4.057 15 C -0.223 4.223 16 C 0.100 3.900 17 C -0.484 4.484 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.413 5.413 21 Si 0.809 3.191 22 H -0.177 1.177 23 H -0.186 1.186 24 H -0.187 1.187 25 C -0.269 4.269 26 C -0.041 4.041 27 C -0.123 4.123 28 C -0.094 4.094 29 H 0.072 0.928 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.256 0.744 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.168 0.832 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.389 -3.381 -10.011 18.668 hybrid contribution 0.466 -0.103 0.459 0.662 sum -14.923 -3.485 -9.552 18.058 Atomic orbital electron populations 1.21747 0.78039 1.04640 1.01688 1.45670 1.08754 1.08306 1.74142 1.18497 0.87529 0.84073 0.75630 1.90755 1.70704 1.32875 1.51835 1.20055 0.92478 0.95274 1.06694 1.21309 0.93711 0.98251 0.95959 1.21210 0.93932 0.98390 0.99062 1.19830 0.93154 0.94674 0.99827 1.21933 0.90580 1.03979 0.80835 1.86635 1.24013 1.84877 1.31898 1.21279 0.79798 0.71548 0.89922 1.90682 1.60846 1.51365 1.43357 1.18450 0.93776 1.28264 0.88798 1.20755 0.98259 0.94686 0.92036 1.21010 0.95521 1.09811 0.95933 1.18210 0.92502 0.85634 0.93611 1.20264 1.02770 1.33283 0.92100 0.88909 1.27036 0.93312 0.91657 1.06522 1.69771 1.14418 1.19807 1.37315 0.85022 0.79907 0.79497 0.74630 1.17694 1.18631 1.18668 1.20864 0.98872 1.15153 0.91964 1.20518 0.93042 0.93727 0.96806 1.21319 0.94519 0.98075 0.98346 1.21550 0.93889 0.97617 0.96329 0.92761 0.86652 0.93082 0.74396 0.84795 0.84270 0.89590 0.90153 0.86705 0.86927 0.88930 0.86799 0.86896 0.83173 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.70 127.77 1.37 2.21 16 2 N -0.72 -9.33 5.66 -487.46 -2.76 -12.09 16 3 C 0.55 12.01 7.77 86.79 0.67 12.68 16 4 O -0.58 -17.35 16.35 -3.90 -0.06 -17.42 16 5 C -0.14 -2.91 5.87 -20.09 -0.12 -3.03 16 6 C -0.07 -1.67 9.60 22.53 0.22 -1.46 16 7 C -0.11 -2.46 9.68 22.23 0.22 -2.24 16 8 C -0.07 -1.74 5.53 -19.81 -0.11 -1.85 16 9 C 0.10 2.77 5.59 71.24 0.40 3.17 16 10 O -0.36 -13.02 9.43 -56.92 -0.54 -13.55 16 11 C 0.52 22.24 7.89 70.27 0.55 22.80 16 12 O -0.57 -25.40 16.11 19.82 0.32 -25.08 16 13 C -0.29 -13.46 5.89 -19.94 -0.12 -13.58 16 14 C -0.04 -1.80 9.55 22.26 0.21 -1.59 16 15 C -0.20 -10.20 8.63 22.47 0.19 -10.00 16 16 C 0.10 5.28 5.58 -21.27 -0.12 5.16 16 17 C -0.46 -22.32 9.04 23.46 0.21 -22.11 16 18 H 0.09 4.27 7.91 -2.91 -0.02 4.25 16 19 C 0.04 1.58 5.14 85.36 0.44 2.01 16 20 N -0.79 -37.10 10.95 21.87 0.24 -36.86 16 21 Si 0.99 33.61 29.60 68.60 2.03 35.64 16 22 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 23 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 24 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 25 C -0.25 -11.88 9.73 22.47 0.22 -11.66 16 26 C -0.02 -1.04 9.52 22.26 0.21 -0.83 16 27 C -0.10 -1.96 9.68 22.23 0.22 -1.75 16 28 C -0.08 -1.17 9.54 22.53 0.21 -0.95 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.42 2.58 6.86 -92.71 -0.64 1.94 16 33 H 0.13 3.09 7.65 -2.91 -0.02 3.06 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 36 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 37 H 0.11 4.90 7.59 -2.91 -0.02 4.88 16 38 H 0.11 5.74 6.15 -2.91 -0.02 5.73 16 39 H 0.30 12.40 8.29 -92.71 -0.77 11.63 16 40 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 41 H 0.11 4.90 7.63 -2.91 -0.02 4.88 16 42 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 43 H 0.17 1.14 6.41 -2.91 -0.02 1.13 16 Total: -1.00 -66.86 377.61 4.53 -62.33 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.42 Total: 30.03 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 4.88 Total: -23.00 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -2.52 Total: -48.95 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.28 Total: -56.05 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 2.03 Total: 35.64 kcal Total: -66.86 4.53 -62.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758687529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.459 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds