Wall clock time and date at job start Tue Mar 31 2020 22:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.46671 * 2 1 4 4 O 1.45199 * 109.47519 * 240.00415 * 2 1 3 5 5 C 1.34704 * 117.00165 * 89.99544 * 4 2 1 6 6 O 1.21469 * 120.00156 * 359.97438 * 5 4 2 7 7 C 1.47740 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.39642 * 120.13297 * 0.02562 * 7 5 4 9 9 C 1.37930 * 119.89518 * 179.97438 * 8 7 5 10 10 C 1.38361 * 120.18047 * 359.74609 * 9 8 7 11 11 C 1.50694 * 119.85933 * 180.27622 * 10 9 8 12 12 O 1.42903 * 109.47724 * 0.23488 * 11 10 9 13 13 C 1.38555 * 120.27345 * 0.51355 * 10 9 8 14 14 F 1.35104 * 119.94719 * 179.76097 * 13 10 9 15 15 C 1.38198 * 120.10005 * 359.48865 * 13 10 9 16 16 C 1.50698 * 109.47562 * 119.99609 * 2 1 3 17 17 O 1.21283 * 120.00027 * 120.00105 * 16 2 1 18 18 N 1.34775 * 120.00308 * 300.00761 * 16 2 1 19 19 C 1.46498 * 119.99779 * 359.97438 * 18 16 2 20 20 C 1.46499 * 120.00120 * 179.97438 * 18 16 2 21 21 C 1.50697 * 109.47208 * 89.99863 * 20 18 16 22 22 H 1.08007 * 120.00175 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00148 * 179.97438 * 21 20 18 24 24 N 1.31513 * 119.99841 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99768 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47472 * 60.00156 * 25 23 21 27 27 H 1.48497 * 109.46718 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46966 * 299.99977 * 25 23 21 29 29 H 1.09002 * 109.47512 * 59.99962 * 1 2 3 30 30 H 1.09006 * 109.47112 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47357 * 299.99352 * 1 2 3 32 32 H 1.07996 * 120.05650 * 0.02562 * 8 7 5 33 33 H 1.08005 * 119.91367 * 180.02562 * 9 8 7 34 34 H 1.08997 * 109.47109 * 120.23866 * 11 10 9 35 35 H 1.09004 * 109.47142 * 240.23614 * 11 10 9 36 36 H 0.96692 * 114.00258 * 179.97438 * 12 11 10 37 37 H 1.07999 * 120.09192 * 180.23137 * 15 13 10 38 38 H 1.09001 * 109.47710 * 90.00179 * 19 18 16 39 39 H 1.09005 * 109.47265 * 210.00096 * 19 18 16 40 40 H 1.09002 * 109.47224 * 329.99768 * 19 18 16 41 41 H 1.09003 * 109.47451 * 209.99975 * 20 18 16 42 42 H 1.08999 * 109.47082 * 329.99936 * 20 18 16 43 43 H 0.96999 * 119.99619 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2178 0.0668 -2.2850 6 8 1.9968 1.2608 -2.2543 7 6 2.7092 -0.5618 -3.5284 8 6 2.9627 -1.9344 -3.5673 9 6 3.4208 -2.5162 -4.7310 10 6 3.6247 -1.7444 -5.8610 11 6 4.1195 -2.3886 -7.1303 12 8 4.2957 -3.7905 -6.9159 13 6 3.3806 -0.3809 -5.8291 14 9 3.5866 0.3672 -6.9350 15 6 2.9214 0.2140 -4.6693 16 6 2.0324 -0.7103 1.2305 17 8 2.7297 -1.6964 1.1192 18 7 1.7067 -0.2499 2.4546 19 6 0.8648 0.9414 2.5890 20 6 2.1947 -0.9408 3.6507 21 6 3.5224 -0.3577 4.0611 22 1 3.9588 0.4473 3.4884 23 6 4.1794 -0.8512 5.1682 24 7 3.6473 -1.8304 5.8664 25 14 5.8248 -0.1279 5.6773 26 1 5.6598 1.3179 5.9730 27 1 6.3195 -0.8283 6.8897 28 1 6.8034 -0.2988 4.5735 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.7996 -2.5397 -2.6879 33 1 3.6166 -3.5780 -4.7615 34 1 3.3907 -2.2315 -7.9255 35 1 5.0718 -1.9425 -7.4170 36 1 4.6129 -4.2705 -7.6930 37 1 2.7277 1.2762 -4.6456 38 1 -0.1833 0.6439 2.6222 39 1 1.1226 1.4667 3.5087 40 1 1.0286 1.6002 1.7362 41 1 1.4767 -0.8153 4.4612 42 1 2.3156 -2.0020 3.4334 43 1 4.1097 -2.1778 6.6451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773633893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:01 Heat of formation + Delta-G solvation = -200.148167 kcal Electronic energy + Delta-G solvation = -28812.538377 eV Core-core repulsion = 24351.196460 eV Total energy + Delta-G solvation = -4461.341918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.09677 -42.08333 -40.79813 -39.96229 -37.85596 -37.48163 -36.73924 -34.94168 -33.48067 -32.72213 -31.81255 -29.59156 -28.16150 -27.69994 -25.99646 -24.85248 -23.92937 -23.55995 -21.95727 -20.50770 -19.77029 -18.78838 -18.70225 -18.17395 -17.86082 -17.41653 -17.17791 -17.13055 -16.96622 -16.86618 -16.56157 -16.32486 -15.81214 -15.66029 -15.13687 -14.91865 -14.84889 -14.50062 -14.26769 -14.15225 -13.81692 -13.75957 -13.56873 -13.38346 -13.31939 -13.02041 -12.82904 -12.63155 -12.55907 -12.46186 -12.39609 -12.20412 -11.98834 -11.83723 -11.73834 -11.35845 -10.65447 -10.64728 -10.17968 -9.88936 -9.53018 -8.24468 -6.38947 -0.69943 -0.02879 1.08140 1.21467 1.36108 1.40172 1.47215 1.60062 2.26434 2.38607 2.41174 2.89966 3.05572 3.12619 3.31106 3.37980 3.59746 3.71678 3.80755 3.82134 3.93426 4.05045 4.30449 4.35859 4.43429 4.45243 4.56664 4.61026 4.66129 4.76685 4.87336 4.90474 4.94420 5.02390 5.09785 5.12729 5.15034 5.21342 5.49935 5.57105 5.76902 6.02612 6.39766 6.59111 6.69408 6.87336 7.18673 7.34652 8.82661 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.002401 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.036052 B =11660.191317 C =12442.511931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.334 6.334 5 C 0.511 3.489 6 O -0.519 6.519 7 C -0.113 4.113 8 C -0.068 4.068 9 C -0.082 4.082 10 C -0.087 4.087 11 C 0.117 3.883 12 O -0.582 6.582 13 C 0.089 3.911 14 F -0.129 7.129 15 C -0.088 4.088 16 C 0.500 3.500 17 O -0.577 6.577 18 N -0.599 5.599 19 C 0.067 3.933 20 C 0.261 3.739 21 C -0.548 4.548 22 H 0.051 0.949 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.965 3.035 26 H -0.260 1.260 27 H -0.276 1.276 28 H -0.280 1.280 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.408 0.592 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.002 0.998 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 2.800 -26.800 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 H 0.134 0.866 4 O -0.249 6.249 5 C 0.357 3.643 6 O -0.410 6.410 7 C -0.114 4.114 8 C -0.086 4.086 9 C -0.099 4.099 10 C -0.089 4.089 11 C 0.040 3.960 12 O -0.392 6.392 13 C 0.070 3.930 14 F -0.108 7.108 15 C -0.107 4.107 16 C 0.287 3.713 17 O -0.457 6.457 18 N -0.331 5.331 19 C -0.075 4.075 20 C 0.140 3.860 21 C -0.586 4.586 22 H 0.070 0.930 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.790 3.210 26 H -0.185 1.185 27 H -0.201 1.201 28 H -0.205 1.205 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.163 0.837 33 H 0.180 0.820 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.260 0.740 37 H 0.174 0.826 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.977 2.717 -26.081 26.690 hybrid contribution 1.128 0.270 0.143 1.169 sum -3.849 2.987 -25.938 26.392 Atomic orbital electron populations 1.22426 0.89002 1.04723 1.06271 1.22597 0.98018 0.96758 0.80518 0.86567 1.86636 1.76930 1.41579 1.19773 1.21394 0.73937 0.84884 0.84090 1.90795 1.49312 1.16235 1.84615 1.18802 1.07074 0.94788 0.90732 1.21758 0.94187 0.93060 0.99611 1.21044 0.96865 1.01954 0.90083 1.20378 0.98815 0.91441 0.98218 1.20864 1.00987 0.82111 0.92052 1.86376 1.90372 1.19086 1.43383 1.16994 1.04063 0.88475 0.83504 1.91528 1.92776 1.76164 1.50308 1.21140 0.97689 1.01760 0.90098 1.20590 0.80712 0.84867 0.85116 1.90668 1.39507 1.28675 1.86846 1.48030 1.50124 1.29550 1.05363 1.22260 0.94790 0.86275 1.04163 1.18847 0.93932 0.91808 0.81438 1.21660 1.06040 1.19314 1.11590 0.93035 1.25818 1.01690 0.95219 0.96170 1.70028 1.40651 1.27029 1.18769 0.85503 0.78905 0.79134 0.77498 1.18464 1.20137 1.20540 0.89408 0.91127 0.86758 0.83694 0.81989 0.89590 0.89933 0.74014 0.82627 0.89475 0.90654 0.89327 0.94759 0.98019 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.19 71.98 0.66 -3.27 16 2 C 0.08 2.57 2.18 29.84 0.07 2.64 16 3 H 0.12 3.57 6.42 -2.39 -0.02 3.55 16 4 O -0.33 -11.28 8.67 -49.75 -0.43 -11.71 16 5 C 0.51 15.39 7.87 70.33 0.55 15.95 16 6 O -0.52 -16.52 15.60 19.94 0.31 -16.21 16 7 C -0.11 -2.82 5.87 -20.10 -0.12 -2.94 16 8 C -0.07 -1.55 9.62 22.54 0.22 -1.33 16 9 C -0.08 -1.54 9.36 22.23 0.21 -1.34 16 10 C -0.09 -1.47 5.89 -19.76 -0.12 -1.59 16 11 C 0.12 1.22 7.00 71.23 0.50 1.72 16 12 O -0.58 -6.00 12.12 -148.98 -1.81 -7.80 16 13 C 0.09 1.65 7.24 22.34 0.16 1.81 16 14 F -0.13 -2.25 16.79 44.97 0.75 -1.50 16 15 C -0.09 -1.89 9.57 22.58 0.22 -1.68 16 16 C 0.50 21.68 7.15 87.66 0.63 22.31 16 17 O -0.58 -31.13 16.08 15.76 0.25 -30.88 16 18 N -0.60 -25.30 2.86 -851.14 -2.43 -27.73 16 19 C 0.07 1.91 8.80 127.77 1.12 3.03 16 20 C 0.26 13.94 5.16 85.63 0.44 14.38 16 21 C -0.55 -31.62 9.39 25.60 0.24 -31.38 16 22 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 23 C 0.01 0.60 5.46 84.66 0.46 1.07 16 24 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 25 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 26 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.11 2.19 4.53 -2.39 -0.01 2.17 16 32 H 0.15 3.50 7.61 -2.91 -0.02 3.48 16 33 H 0.16 2.74 6.99 -2.91 -0.02 2.72 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.41 0.23 9.12 -74.06 -0.68 -0.45 16 37 H 0.16 3.18 7.65 -2.91 -0.02 3.16 16 38 H 0.09 1.92 6.95 -2.39 -0.02 1.90 16 39 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 40 H 0.09 2.03 6.01 -2.39 -0.01 2.02 16 41 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 42 H 0.00 0.10 7.42 -2.39 -0.02 0.09 16 43 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -79.49 373.55 4.60 -74.89 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.40 Total: 9.87 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.24 Total: 19.38 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.15 Total: -83.11 kcal Atomic # 8 Polarization: -64.93 SS G_CDS: -1.67 Total: -66.60 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.75 Total: -1.50 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -79.49 4.60 -74.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773633893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.262 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds