Wall clock time and date at job start Tue Mar 31 2020 22:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81403 * 109.46883 * 2 1 4 4 O 1.42093 * 108.57956 * 65.51993 * 3 2 1 5 5 O 1.42095 * 108.57950 * 294.48867 * 3 2 1 6 6 C 1.81403 * 101.92030 * 180.02562 * 3 2 1 7 7 C 1.52991 * 109.47172 * 180.02562 * 6 3 2 8 8 N 1.46507 * 109.47266 * 179.97438 * 7 6 3 9 9 C 1.46501 * 119.99673 * 269.99674 * 8 7 6 10 10 C 1.34773 * 120.00266 * 90.00082 * 8 7 6 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 8 7 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 8 7 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 8 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.08999 * 109.46474 * 299.99427 * 1 2 3 28 28 H 1.08995 * 109.47344 * 60.00087 * 1 2 3 29 29 H 1.08998 * 109.46646 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46991 * 240.00536 * 2 1 3 31 31 H 1.08993 * 109.47476 * 120.00684 * 2 1 3 32 32 H 1.08996 * 109.47160 * 59.99553 * 6 3 2 33 33 H 1.09002 * 109.47059 * 300.00111 * 6 3 2 34 34 H 1.09005 * 109.47510 * 59.99760 * 7 6 3 35 35 H 1.08998 * 109.47322 * 299.99502 * 7 6 3 36 36 H 1.08995 * 109.47181 * 269.99950 * 9 8 7 37 37 H 1.09006 * 109.47212 * 30.00135 * 9 8 7 38 38 H 1.09002 * 109.46759 * 149.99698 * 9 8 7 39 39 H 1.09001 * 109.46892 * 59.99768 * 12 10 8 40 40 H 1.08991 * 109.47294 * 299.99778 * 12 10 8 41 41 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 43 43 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 45 45 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7591 2.3232 -1.2257 6 6 3.9329 1.4720 -0.0008 7 6 4.6280 2.8349 -0.0002 8 7 6.0804 2.6425 -0.0003 9 6 6.8064 2.5459 1.2685 10 6 6.7485 2.5544 -1.1674 11 8 6.1473 2.6340 -2.2177 12 6 8.2423 2.3559 -1.1674 13 6 8.7404 2.2900 -2.5883 14 6 8.9033 1.0715 -3.2073 15 6 9.3676 1.0078 -4.5119 16 6 9.6663 2.1679 -5.2101 17 6 9.5049 3.3971 -4.6132 18 6 9.0342 3.4739 -3.2891 19 6 8.8638 4.7317 -2.6658 20 1 8.1533 4.8431 -1.8601 21 6 9.6157 5.8319 -3.0929 22 7 10.7740 5.6474 -3.6725 23 14 8.9656 7.5641 -2.8353 24 1 9.9436 8.5447 -3.3713 25 1 7.6704 7.7173 -3.5452 26 1 8.7664 7.8073 -1.3839 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 4.2252 0.9150 -0.8909 33 1 4.2260 0.9147 0.8890 34 1 4.3356 3.3916 0.8902 35 1 4.3351 3.3925 -0.8898 36 1 7.1215 3.5406 1.5835 37 1 6.1549 2.1136 2.0280 38 1 7.6831 1.9114 1.1380 39 1 8.4851 1.4255 -0.6541 40 1 8.7196 3.1899 -0.6531 41 1 8.6732 0.1615 -2.6731 42 1 9.4972 0.0472 -4.9882 43 1 10.0269 2.1065 -6.2262 44 1 9.7378 4.2995 -5.1590 45 1 11.1505 4.7554 -3.7307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777427985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:55 Heat of formation + Delta-G solvation = -119.600923 kcal Electronic energy + Delta-G solvation = -27455.478159 eV Core-core repulsion = 23563.842208 eV Total energy + Delta-G solvation = -3891.635951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08665 -39.43656 -38.05444 -37.14414 -36.84461 -35.74640 -34.03122 -33.90057 -32.42097 -31.10752 -28.65942 -27.64423 -26.87224 -25.53112 -24.08566 -22.83272 -21.97438 -20.22655 -19.86807 -19.52200 -18.28196 -17.96419 -17.21178 -17.18160 -17.02452 -16.64357 -16.52123 -15.87877 -15.76275 -15.41671 -15.35703 -14.99062 -14.40732 -14.22771 -14.15730 -14.03075 -13.86448 -13.63621 -13.55485 -13.35810 -13.20484 -13.15398 -13.08247 -13.00055 -12.74446 -12.61277 -12.45971 -12.35807 -12.23601 -12.00598 -11.99525 -11.47731 -11.37611 -11.22365 -10.85445 -10.77018 -9.74470 -9.44837 -9.43274 -9.06245 -6.40452 -1.04684 0.90232 0.98388 1.45494 1.60561 1.69489 1.74852 1.78917 2.04994 2.29479 2.65320 2.70940 3.04535 3.50455 3.56303 3.66995 3.74637 3.90891 4.01925 4.20166 4.24597 4.26280 4.34622 4.40026 4.46591 4.52023 4.57304 4.65575 4.70196 4.73389 4.83067 4.85757 4.92693 5.00501 5.07479 5.11158 5.32116 5.48832 5.51025 5.78731 5.83634 5.98179 6.04807 6.28592 6.35420 6.45911 6.85594 7.01428 7.27047 8.07885 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.003109 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.083101 B = 9005.117396 C = 9917.491270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.588 4.588 3 S 2.418 3.582 4 O -0.968 6.968 5 O -0.989 6.989 6 C -0.621 4.621 7 C 0.113 3.887 8 N -0.614 5.614 9 C 0.065 3.935 10 C 0.512 3.488 11 O -0.572 6.572 12 C -0.064 4.064 13 C -0.191 4.191 14 C -0.079 4.079 15 C -0.249 4.249 16 C -0.098 4.098 17 C -0.246 4.246 18 C 0.084 3.916 19 C -0.541 4.541 20 H 0.066 0.934 21 C 0.006 3.994 22 N -0.819 5.819 23 Si 1.104 2.896 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.252 1.252 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.152 0.848 31 H 0.170 0.830 32 H 0.133 0.867 33 H 0.176 0.824 34 H 0.115 0.885 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 -12.484 15.209 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.721 4.721 3 S 2.604 3.396 4 O -0.965 6.965 5 O -0.986 6.986 6 C -0.751 4.751 7 C -0.011 4.011 8 N -0.349 5.349 9 C -0.076 4.076 10 C 0.302 3.698 11 O -0.450 6.450 12 C -0.104 4.104 13 C -0.193 4.193 14 C -0.097 4.097 15 C -0.268 4.268 16 C -0.116 4.116 17 C -0.265 4.265 18 C 0.082 3.918 19 C -0.570 4.570 20 H 0.084 0.916 21 C -0.211 4.211 22 N -0.443 5.443 23 Si 0.922 3.078 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.176 1.176 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.171 0.829 31 H 0.187 0.813 32 H 0.151 0.849 33 H 0.193 0.807 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.127 0.873 44 H 0.100 0.900 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.240 -10.025 14.361 21.956 hybrid contribution 0.359 -2.041 -0.441 2.119 sum -12.881 -12.066 13.919 22.478 Atomic orbital electron populations 1.21707 0.90576 1.06275 1.03520 1.30005 1.07155 1.20396 1.14511 1.07881 0.77922 0.80097 0.73700 1.93535 1.81548 1.75393 1.46068 1.93557 1.81833 1.75815 1.47384 1.30676 1.23676 1.06926 1.13824 1.21135 0.81370 0.94366 1.04217 1.47931 1.06664 1.73082 1.07179 1.22196 0.98343 1.03270 0.83821 1.21314 0.90757 0.74789 0.82988 1.90679 1.70716 1.50432 1.33171 1.20293 0.90113 1.04307 0.95656 1.19543 1.11043 0.92777 0.95893 1.20808 0.97608 0.96354 0.94954 1.20723 1.12372 0.97131 0.96616 1.20902 0.98981 0.93031 0.98667 1.21151 1.12690 0.96436 0.96265 1.17791 0.89396 0.93457 0.91177 1.20523 1.22196 0.95094 1.19182 0.91595 1.28162 0.92892 1.09273 0.90753 1.70553 1.14605 1.28180 1.30918 0.83168 0.76011 0.69708 0.78877 1.19234 1.20361 1.17582 0.90700 0.91785 0.87623 0.82941 0.81258 0.84894 0.80659 0.86666 0.92048 0.91928 0.87603 0.89325 0.86466 0.88793 0.85998 0.86218 0.87341 0.90010 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.92 71.98 0.71 -0.95 16 2 C -0.59 -5.01 6.53 71.98 0.47 -4.54 16 3 S 2.42 44.22 4.72 -56.49 -0.27 43.95 16 4 O -0.97 -22.25 18.10 -127.37 -2.30 -24.56 16 5 O -0.99 -29.36 18.10 -127.37 -2.30 -31.66 16 6 C -0.62 -10.46 6.13 71.98 0.44 -10.02 16 7 C 0.11 2.87 5.41 86.37 0.47 3.33 16 8 N -0.61 -16.76 2.87 -846.76 -2.43 -19.19 16 9 C 0.07 1.10 10.24 127.77 1.31 2.40 16 10 C 0.51 19.52 7.31 87.66 0.64 20.16 16 11 O -0.57 -27.98 15.61 -3.04 -0.05 -28.03 16 12 C -0.06 -2.39 3.73 29.10 0.11 -2.28 16 13 C -0.19 -9.02 4.43 -19.40 -0.09 -9.11 16 14 C -0.08 -3.43 9.66 22.22 0.21 -3.22 16 15 C -0.25 -11.00 10.05 22.46 0.23 -10.78 16 16 C -0.10 -4.72 10.02 22.22 0.22 -4.50 16 17 C -0.25 -13.54 7.95 22.73 0.18 -13.36 16 18 C 0.08 4.62 5.30 -21.29 -0.11 4.51 16 19 C -0.54 -29.73 8.08 23.46 0.19 -29.54 16 20 H 0.07 3.57 6.73 -2.91 -0.02 3.55 16 21 C 0.01 0.29 4.94 85.25 0.42 0.71 16 22 N -0.82 -45.40 12.31 21.82 0.27 -45.13 16 23 Si 1.10 45.80 30.00 68.60 2.06 47.85 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 25 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.17 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.18 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.12 2.23 8.07 -2.38 -0.02 2.21 16 35 H 0.06 2.03 7.42 -2.39 -0.02 2.01 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 0.99 8.07 -2.38 -0.02 0.98 16 38 H 0.09 1.30 6.44 -2.39 -0.02 1.29 16 39 H 0.12 3.28 7.31 -2.39 -0.02 3.27 16 40 H 0.09 3.55 7.02 -2.39 -0.02 3.53 16 41 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 42 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 43 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 44 H 0.08 4.75 6.49 -2.91 -0.02 4.73 16 45 H 0.28 16.31 6.68 -92.71 -0.62 15.69 16 Total: -1.00 -86.55 386.29 1.51 -85.04 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 1.13 Total: 28.91 kcal Atomic # 6 Polarization: -62.59 SS G_CDS: 5.41 Total: -57.18 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -2.16 Total: -64.32 kcal Atomic # 8 Polarization: -79.60 SS G_CDS: -4.66 Total: -84.26 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.06 Total: 47.85 kcal Atomic # 16 Polarization: 44.22 SS G_CDS: -0.27 Total: 43.95 kcal Total: -86.55 1.51 -85.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777427985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.560 kcal (2) G-P(sol) polarization free energy of solvation -86.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds