Wall clock time and date at job start Tue Mar 31 2020 22:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47257 * 2 1 4 4 C 1.46498 * 120.00333 * 269.99945 * 3 2 1 5 5 C 1.50693 * 109.47358 * 270.00224 * 4 3 2 6 6 H 1.08002 * 120.00197 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99839 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00232 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99752 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47321 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47436 * 119.99770 * 9 7 5 12 12 H 1.48497 * 109.46757 * 239.99901 * 9 7 5 13 13 C 1.34771 * 119.99678 * 90.00323 * 3 2 1 14 14 O 1.21284 * 120.00248 * 179.97438 * 13 3 2 15 15 C 1.50705 * 120.00253 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47379 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00269 * 180.02562 * 16 15 13 18 18 O 1.20832 * 119.99399 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00288 * 179.97438 * 17 16 15 20 20 C 1.53003 * 109.47069 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46776 * 180.02562 * 20 19 17 22 22 C 1.50700 * 109.46909 * 180.02562 * 21 20 19 23 23 C 1.38423 * 122.53613 * 270.00211 * 22 21 20 24 24 C 1.33390 * 114.91977 * 180.02562 * 23 22 21 25 25 S 1.75887 * 109.59565 * 359.75483 * 24 23 22 26 26 C 1.33391 * 122.54338 * 90.02238 * 22 21 20 27 27 H 1.09002 * 109.47534 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47048 * 300.00172 * 1 2 3 29 29 H 1.09010 * 109.46912 * 59.99830 * 1 2 3 30 30 H 1.09002 * 109.46897 * 240.00337 * 2 1 3 31 31 H 1.09000 * 109.47379 * 120.00768 * 2 1 3 32 32 H 1.09004 * 109.46751 * 30.00387 * 4 3 2 33 33 H 1.09002 * 109.46979 * 149.99834 * 4 3 2 34 34 H 0.96999 * 119.99816 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46940 * 59.99707 * 15 13 3 36 36 H 1.09001 * 109.46966 * 300.00449 * 15 13 3 37 37 H 1.09005 * 109.47250 * 59.99680 * 19 17 16 38 38 H 1.09007 * 109.47222 * 299.99932 * 19 17 16 39 39 H 1.08994 * 109.46921 * 60.00192 * 20 19 17 40 40 H 1.08994 * 109.47207 * 299.99884 * 20 19 17 41 41 H 1.08994 * 109.47301 * 60.00348 * 21 20 19 42 42 H 1.09003 * 109.46866 * 299.99784 * 21 20 19 43 43 H 1.08001 * 122.53963 * 0.04211 * 23 22 21 44 44 H 1.07998 * 125.20164 * 180.02562 * 24 23 22 45 45 H 1.08002 * 125.19887 * 359.95301 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3906 -2.8774 8 7 3.3494 3.1267 -3.6174 9 14 5.9134 2.0965 -3.4171 10 1 6.6008 1.2403 -2.4172 11 1 5.9204 1.4184 -4.7382 12 1 6.6215 3.3973 -3.5246 13 6 2.2430 2.0164 1.1672 14 8 2.6478 3.1597 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3055 2.1958 3.5760 17 6 2.1345 1.7121 4.8164 18 8 1.7351 0.5827 4.9745 19 6 2.4406 2.5774 6.0115 20 6 2.1622 1.7919 7.2946 21 6 2.4724 2.6708 8.5080 22 6 2.1988 1.8969 9.7719 23 6 0.9633 1.9032 10.3960 24 6 0.8901 1.1658 11.5051 25 16 2.4443 0.4001 11.8081 26 6 3.1289 1.1542 10.3741 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0283 33 1 2.0956 3.1411 -1.1383 34 1 3.6755 3.5172 -4.4433 35 1 2.6211 0.4184 2.5302 36 1 0.9433 1.0124 2.5298 37 1 1.8112 3.4671 5.9867 38 1 3.4894 2.8735 5.9866 39 1 2.7913 0.9021 7.3196 40 1 1.1134 1.4962 7.3193 41 1 1.8430 3.5603 8.4828 42 1 3.5212 2.9668 8.4835 43 1 0.1222 2.4626 10.0138 44 1 0.0098 1.0524 12.1204 45 1 4.1456 1.0311 10.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783261530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:48 Heat of formation + Delta-G solvation = -119.424193 kcal Electronic energy + Delta-G solvation = -25851.358113 eV Core-core repulsion = 21959.729825 eV Total energy + Delta-G solvation = -3891.628287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75880 -40.57699 -39.33936 -37.69852 -36.97709 -35.20500 -34.94075 -31.79070 -31.32387 -30.52439 -28.85114 -28.00836 -25.12704 -24.61950 -24.08472 -22.91946 -21.51463 -20.26055 -19.62922 -18.94096 -18.64523 -18.41812 -18.04775 -17.86250 -17.35984 -16.85425 -16.48444 -16.10661 -15.94515 -15.41327 -14.84406 -14.68453 -14.53200 -14.47227 -13.98912 -13.95352 -13.76001 -13.63905 -13.52410 -13.30615 -13.28408 -13.06546 -12.69945 -12.66935 -12.63937 -12.51828 -12.34417 -12.23125 -12.05502 -11.79488 -11.70008 -11.67898 -11.59684 -11.49285 -10.72862 -10.65532 -9.67430 -9.54907 -9.25700 -8.23757 -6.38199 0.13967 0.81342 1.12796 1.13613 1.31636 1.36879 1.39275 1.50851 1.61984 1.82865 2.33451 2.46938 3.06339 3.43311 3.62949 3.82026 3.94479 3.96802 4.01780 4.14738 4.17909 4.31267 4.37268 4.48947 4.54252 4.58043 4.68104 4.69708 4.77073 4.88483 4.93765 4.94555 5.02265 5.06665 5.18831 5.21963 5.30620 5.35117 5.41402 5.54112 5.58899 5.64808 5.79337 6.03755 6.55720 6.68719 6.71426 7.21035 7.36304 8.83812 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.001694 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.560191 B =16525.103618 C =17086.366946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.498 3.502 14 O -0.578 6.578 15 C 0.062 3.938 16 O -0.352 6.352 17 C 0.458 3.542 18 O -0.533 6.533 19 C -0.108 4.108 20 C -0.093 4.093 21 C -0.056 4.056 22 C -0.108 4.108 23 C -0.142 4.142 24 C -0.217 4.217 25 S 0.075 5.925 26 C -0.223 4.223 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.154 0.846 44 H 0.181 0.819 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 -6.467 29.109 30.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.457 6.457 15 C -0.015 4.015 16 O -0.268 6.268 17 C 0.303 3.697 18 O -0.423 6.423 19 C -0.145 4.145 20 C -0.131 4.131 21 C -0.095 4.095 22 C -0.120 4.120 23 C -0.173 4.173 24 C -0.352 4.352 25 S 0.339 5.661 26 C -0.358 4.358 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.171 0.829 44 H 0.198 0.802 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.775 -7.129 30.088 31.287 hybrid contribution 0.175 0.820 -1.928 2.103 sum -4.601 -6.309 28.159 29.222 Atomic orbital electron populations 1.22174 0.94318 1.03760 1.01843 1.21856 0.95562 0.81027 1.04341 1.48208 1.63587 1.15225 1.05732 1.18796 0.95589 0.91695 0.79784 1.21737 0.97829 1.32130 1.06663 0.92750 1.25850 1.02402 0.94432 0.96404 1.70049 1.37670 1.34091 1.14801 0.85357 0.78981 0.78012 0.78385 1.19158 1.19408 1.20752 1.20584 0.78303 0.86657 0.85880 1.90675 1.47132 1.20170 1.87772 1.22773 1.04506 0.92066 0.82151 1.86590 1.79048 1.45643 1.15482 1.24707 0.73149 0.87328 0.84470 1.90649 1.43671 1.21248 1.86736 1.21603 1.06968 0.98805 0.87154 1.21314 1.02623 0.98078 0.91086 1.20327 1.03732 0.97111 0.88371 1.19140 0.93269 1.00604 0.99021 1.20396 0.98686 1.02077 0.96104 1.25902 1.01698 1.04384 1.03205 1.84332 1.05317 1.49589 1.26872 1.25747 1.04686 1.04959 1.00403 0.88434 0.92429 0.93658 0.90024 0.88502 0.95262 0.98174 0.92353 0.86780 0.86264 0.85252 0.85537 0.92042 0.91726 0.88973 0.89368 0.82851 0.80204 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.09 2.83 5.93 86.38 0.51 3.34 16 3 N -0.60 -25.17 2.46 -826.16 -2.03 -27.20 16 4 C 0.26 14.07 5.16 85.63 0.44 14.51 16 5 C -0.55 -31.33 9.39 25.60 0.24 -31.09 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 9 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 C 0.50 21.28 7.75 87.66 0.68 21.96 16 14 O -0.58 -30.82 16.08 15.76 0.25 -30.56 16 15 C 0.06 1.92 4.50 71.24 0.32 2.24 16 16 O -0.35 -11.07 9.75 -45.07 -0.44 -11.51 16 17 C 0.46 11.42 7.96 71.23 0.57 11.99 16 18 O -0.53 -15.20 15.73 21.95 0.35 -14.86 16 19 C -0.11 -1.64 5.81 29.85 0.17 -1.47 16 20 C -0.09 -1.32 4.49 30.60 0.14 -1.18 16 21 C -0.06 -0.58 5.47 29.85 0.16 -0.42 16 22 C -0.11 -1.46 5.06 -20.92 -0.11 -1.57 16 23 C -0.14 -1.85 9.98 21.22 0.21 -1.64 16 24 C -0.22 -2.70 11.23 66.72 0.75 -1.95 16 25 S 0.08 1.01 23.34 -56.49 -1.32 -0.31 16 26 C -0.22 -3.08 10.98 66.72 0.73 -2.34 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 29 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 31 H 0.10 2.29 6.44 -2.39 -0.02 2.28 16 32 H 0.03 1.58 8.07 -2.38 -0.02 1.56 16 33 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.11 3.09 7.39 -2.39 -0.02 3.08 16 36 H 0.12 3.08 7.18 -2.39 -0.02 3.07 16 37 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.13 1.52 8.14 -2.38 -0.02 1.51 16 39 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 40 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 41 H 0.09 0.72 8.13 -2.39 -0.02 0.70 16 42 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 43 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 45 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -78.36 398.00 6.12 -72.23 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.98 Total: 10.75 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.02 Total: 10.08 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.74 Total: -82.64 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: 0.16 Total: -56.93 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -1.32 Total: -0.31 kcal Total: -78.36 6.12 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783261530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.189 kcal (2) G-P(sol) polarization free energy of solvation -78.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds