Wall clock time and date at job start Tue Mar 31 2020 22:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47401 * 2 1 4 4 O 1.45195 * 109.47370 * 120.00466 * 2 1 3 5 5 C 1.34228 * 117.00328 * 270.00143 * 4 2 1 6 6 O 1.20831 * 119.99436 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00471 * 179.72507 * 5 4 2 8 8 C 1.52996 * 109.47388 * 180.27629 * 7 5 4 9 9 C 1.53005 * 109.47185 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47033 * 179.97438 * 9 8 7 11 11 C 1.38420 * 122.54389 * 269.73661 * 10 9 8 12 12 C 1.33392 * 114.92183 * 179.76015 * 11 10 9 13 13 S 1.75884 * 109.59199 * 0.47781 * 12 11 10 14 14 C 1.33391 * 122.53730 * 90.02497 * 10 9 8 15 15 C 1.50700 * 109.47243 * 240.00711 * 2 1 3 16 16 O 1.21280 * 119.99903 * 248.56710 * 15 2 1 17 17 N 1.34774 * 120.00192 * 68.56167 * 15 2 1 18 18 C 1.46503 * 120.00070 * 4.59016 * 17 15 2 19 19 C 1.46500 * 120.00144 * 184.58403 * 17 15 2 20 20 C 1.50707 * 109.46758 * 90.00498 * 19 17 15 21 21 H 1.07995 * 120.00367 * 0.02562 * 20 19 17 22 22 C 1.37882 * 119.99633 * 180.02562 * 20 19 17 23 23 N 1.31516 * 120.00326 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99720 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47057 * 59.99849 * 24 22 20 26 26 H 1.48497 * 109.47118 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47108 * 300.00089 * 24 22 20 28 28 H 1.09001 * 109.46933 * 307.14984 * 1 2 3 29 29 H 1.09003 * 109.46963 * 67.14810 * 1 2 3 30 30 H 1.08995 * 109.46906 * 187.14579 * 1 2 3 31 31 H 1.09004 * 109.46756 * 300.27642 * 7 5 4 32 32 H 1.09000 * 109.47012 * 60.26729 * 7 5 4 33 33 H 1.09004 * 109.47183 * 299.99752 * 8 7 5 34 34 H 1.08996 * 109.47081 * 59.99630 * 8 7 5 35 35 H 1.08997 * 109.46834 * 299.99640 * 9 8 7 36 36 H 1.09004 * 109.46704 * 59.99933 * 9 8 7 37 37 H 1.07999 * 122.53793 * 0.02562 * 11 10 9 38 38 H 1.07996 * 125.19959 * 180.20882 * 12 11 10 39 39 H 1.08002 * 125.20091 * 0.02562 * 14 10 9 40 40 H 1.09004 * 109.46907 * 86.11886 * 18 17 15 41 41 H 1.08999 * 109.47433 * 206.11367 * 18 17 15 42 42 H 1.08993 * 109.47212 * 326.11825 * 18 17 15 43 43 H 1.09004 * 109.47495 * 210.00091 * 19 17 15 44 44 H 1.08994 * 109.47543 * 330.00625 * 19 17 15 45 45 H 0.96996 * 119.99862 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 1.1854 5 6 2.2172 0.0638 2.2811 6 8 1.9982 1.2517 2.2504 7 6 2.7130 -0.5784 3.5510 8 6 2.8523 0.4867 4.6405 9 6 3.3550 -0.1655 5.9300 10 6 3.4928 0.8837 7.0029 11 6 4.6644 1.5925 7.2052 12 6 4.6164 2.4877 8.1929 13 16 3.0253 2.4549 8.9418 14 6 2.4967 1.1957 7.8334 15 6 2.0324 -0.7103 -1.2305 16 8 2.5964 -1.7788 -1.1261 17 7 1.8548 -0.1580 -2.4471 18 6 1.2644 1.1775 -2.5662 19 6 2.2523 -0.8932 -3.6503 20 6 1.0933 -1.7245 -4.1369 21 1 0.1544 -1.7067 -3.6035 22 6 1.2316 -2.5078 -5.2631 23 7 2.3747 -2.5292 -5.9130 24 14 -0.2048 -3.5388 -5.8658 25 1 -1.3518 -2.6511 -6.1848 26 1 0.1984 -4.2848 -7.0848 27 1 -0.6028 -4.5004 -4.8065 28 1 -0.3633 0.6206 0.8191 29 1 -0.3633 0.3991 -0.9470 30 1 -0.3633 -1.0196 0.1278 31 1 2.0024 -1.3388 3.8750 32 1 3.6829 -1.0415 3.3693 33 1 3.5629 1.2471 4.3165 34 1 1.8824 0.9496 4.8221 35 1 2.6441 -0.9256 6.2538 36 1 4.3249 -0.6288 5.7486 37 1 5.5490 1.4359 6.6057 38 1 5.4314 3.1309 8.4904 39 1 1.5157 0.7439 7.8265 40 1 2.0472 1.9303 -2.4732 41 1 0.7800 1.2752 -3.5377 42 1 0.5270 1.3205 -1.7765 43 1 2.5446 -0.1871 -4.4276 44 1 3.0940 -1.5449 -3.4165 45 1 2.4719 -3.0800 -6.7055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783265199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:58 Heat of formation + Delta-G solvation = -92.947824 kcal Electronic energy + Delta-G solvation = -26156.037914 eV Core-core repulsion = 22265.557728 eV Total energy + Delta-G solvation = -3890.480186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70663 -39.07540 -38.72132 -36.51904 -34.91864 -34.51764 -32.87612 -31.66103 -30.42845 -28.03521 -27.69402 -26.15724 -24.72409 -23.93363 -22.76166 -21.91995 -20.47834 -19.08936 -18.84348 -18.10108 -17.64701 -16.72877 -16.58036 -16.37746 -15.90294 -15.59614 -15.01563 -14.95003 -14.54390 -14.27708 -13.98232 -13.68652 -13.41174 -13.16247 -13.07742 -12.89408 -12.65741 -12.45695 -12.21393 -12.09396 -12.07119 -12.00838 -11.76089 -11.59692 -11.33153 -11.21547 -11.09314 -10.97994 -10.91286 -10.69214 -10.56046 -10.48670 -10.18481 -9.68437 -9.14745 -8.91266 -8.71332 -8.46216 -7.72810 -6.07298 -4.12725 0.66685 1.32846 1.65009 2.18195 2.31112 2.56690 3.23698 3.30225 3.34876 3.38526 3.89248 4.40542 4.41341 4.51766 4.61346 4.71692 4.83254 4.86020 4.99844 5.05128 5.08798 5.12793 5.22524 5.26784 5.27664 5.32846 5.44595 5.47134 5.63815 5.68207 5.75709 5.77387 5.86265 5.96434 6.06704 6.09199 6.16881 6.27190 6.47794 6.98155 7.38838 7.45783 7.74233 7.88592 8.18355 8.28802 8.82841 8.97945 9.52296 11.00729 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031985 B = 0.001673 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.207730 B =16727.595953 C =16780.883131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.326 6.326 5 C 0.459 3.541 6 O -0.513 6.513 7 C -0.114 4.114 8 C -0.102 4.102 9 C -0.062 4.062 10 C -0.097 4.097 11 C -0.129 4.129 12 C -0.212 4.212 13 S 0.085 5.915 14 C -0.211 4.211 15 C 0.509 3.491 16 O -0.521 6.521 17 N -0.596 5.596 18 C 0.067 3.933 19 C 0.246 3.754 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 10.283 27.186 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.241 6.241 5 C 0.302 3.698 6 O -0.402 6.402 7 C -0.152 4.152 8 C -0.140 4.140 9 C -0.101 4.101 10 C -0.110 4.110 11 C -0.160 4.160 12 C -0.347 4.347 13 S 0.349 5.651 14 C -0.346 4.346 15 C 0.293 3.707 16 O -0.397 6.397 17 N -0.330 5.330 18 C -0.076 4.076 19 C 0.127 3.873 20 C -0.569 4.569 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.181 0.819 39 H 0.181 0.819 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.387 10.786 28.221 30.214 hybrid contribution -0.201 -1.073 -1.675 1.999 sum 0.187 9.713 26.546 28.268 Atomic orbital electron populations 1.22292 0.92306 1.04118 1.03999 1.22616 0.95892 0.97376 0.82912 0.87971 1.86638 1.76340 1.41526 1.19640 1.23834 0.74175 0.85995 0.85758 1.90643 1.48370 1.16730 1.84454 1.21420 1.04364 0.99996 0.89387 1.21404 1.03162 0.97184 0.92218 1.20347 1.02621 0.95309 0.91864 1.18919 0.93171 1.00211 0.98671 1.20153 0.99264 0.97306 0.99269 1.25609 1.00792 1.05702 1.02602 1.84308 1.07277 1.37489 1.36045 1.25496 1.03683 1.03948 1.01487 1.19788 0.80879 0.86144 0.83856 1.90694 1.41704 1.21505 1.85789 1.48063 1.60781 1.17249 1.06869 1.21974 0.97875 0.84200 1.03586 1.19360 0.96785 0.91638 0.79493 1.21391 0.98402 1.26440 1.10681 0.92401 1.24941 0.96105 0.96586 0.96428 1.69921 1.24099 1.40205 1.18981 0.86539 0.82274 0.80376 0.78118 1.20226 1.21140 1.20145 0.91318 0.89014 0.90678 0.87450 0.87312 0.90682 0.90797 0.90542 0.90356 0.84104 0.81904 0.81864 0.93444 0.90135 0.91679 0.94648 0.93592 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.14 37.16 0.34 -2.07 16 2 C 0.07 1.19 2.16 -27.88 -0.06 1.13 16 3 H 0.10 1.59 6.73 -51.93 -0.35 1.24 16 4 O -0.33 -5.40 9.43 -45.86 -0.43 -5.83 16 5 C 0.46 6.23 7.93 36.00 0.29 6.51 16 6 O -0.51 -7.85 15.20 -18.75 -0.29 -8.13 16 7 C -0.11 -1.01 5.81 -27.89 -0.16 -1.18 16 8 C -0.10 -0.83 4.49 -26.73 -0.12 -0.95 16 9 C -0.06 -0.39 5.47 -27.88 -0.15 -0.55 16 10 C -0.10 -0.74 5.06 -106.25 -0.54 -1.28 16 11 C -0.13 -0.96 9.98 -41.21 -0.41 -1.37 16 12 C -0.21 -1.48 11.23 29.04 0.33 -1.15 16 13 S 0.09 0.60 23.34 -107.50 -2.51 -1.91 16 14 C -0.21 -1.56 10.98 29.04 0.32 -1.24 16 15 C 0.51 10.98 7.03 -10.99 -0.08 10.91 16 16 O -0.52 -13.57 16.08 -13.95 -0.22 -13.80 16 17 N -0.60 -12.72 2.86 -182.95 -0.52 -13.24 16 18 C 0.07 1.06 9.80 59.85 0.59 1.65 16 19 C 0.25 6.42 5.18 -5.19 -0.03 6.39 16 20 C -0.53 -14.88 9.39 -34.43 -0.32 -15.21 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 24 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.23 5.46 -51.93 -0.28 0.95 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.08 0.44 8.13 -51.93 -0.42 0.01 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 42 H 0.06 0.86 4.31 -51.93 -0.22 0.64 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -34.92 393.57 -9.13 -44.05 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.69 Total: -1.33 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.11 Total: 3.25 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.21 Total: -38.87 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.94 Total: -27.76 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.51 Total: -1.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.92 -9.13 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783265199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.897 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds