Wall clock time and date at job start Tue Mar 31 2020 22:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47400 * 2 1 4 4 O 1.45199 * 109.46809 * 240.00016 * 2 1 3 5 5 C 1.34234 * 116.99947 * 90.00178 * 4 2 1 6 6 O 1.20822 * 120.00090 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99997 * 179.72219 * 5 4 2 8 8 C 1.52992 * 109.47263 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47304 * 180.02562 * 8 7 5 10 10 C 1.50708 * 109.47430 * 179.97438 * 9 8 7 11 11 C 1.38420 * 122.53968 * 269.74089 * 10 9 8 12 12 C 1.33393 * 114.91650 * 179.76128 * 11 10 9 13 13 S 1.75878 * 109.59443 * 0.47249 * 12 11 10 14 14 C 1.33384 * 122.53462 * 90.02312 * 10 9 8 15 15 C 1.50696 * 109.47251 * 120.00433 * 2 1 3 16 16 O 1.21278 * 120.00216 * 119.99362 * 15 2 1 17 17 N 1.34781 * 119.99463 * 299.99781 * 15 2 1 18 18 C 1.46502 * 120.00294 * 359.97438 * 17 15 2 19 19 C 1.46507 * 119.99629 * 179.97438 * 17 15 2 20 20 C 1.50709 * 109.46713 * 90.00126 * 19 17 15 21 21 H 1.08002 * 120.00052 * 359.97438 * 20 19 17 22 22 C 1.37870 * 119.99611 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00473 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99882 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47528 * 89.99626 * 24 22 20 26 26 H 1.48499 * 109.47500 * 209.99798 * 24 22 20 27 27 H 1.48505 * 109.46789 * 329.99560 * 24 22 20 28 28 H 1.09004 * 109.47073 * 59.99280 * 1 2 3 29 29 H 1.08993 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46472 * 300.00387 * 1 2 3 31 31 H 1.09001 * 109.47201 * 300.00712 * 7 5 4 32 32 H 1.09001 * 109.46880 * 60.00295 * 7 5 4 33 33 H 1.09001 * 109.47602 * 300.00478 * 8 7 5 34 34 H 1.09001 * 109.46922 * 60.00333 * 8 7 5 35 35 H 1.08998 * 109.47353 * 300.00224 * 9 8 7 36 36 H 1.09006 * 109.47395 * 59.99968 * 9 8 7 37 37 H 1.07997 * 122.53725 * 359.97438 * 11 10 9 38 38 H 1.08002 * 125.19955 * 180.20937 * 12 11 10 39 39 H 1.08000 * 125.21163 * 0.02706 * 14 10 9 40 40 H 1.08997 * 109.46741 * 90.00395 * 18 17 15 41 41 H 1.09000 * 109.47103 * 209.99884 * 18 17 15 42 42 H 1.08991 * 109.47141 * 330.00257 * 18 17 15 43 43 H 1.08998 * 109.47195 * 209.99676 * 19 17 15 44 44 H 1.09001 * 109.47202 * 330.00475 * 19 17 15 45 45 H 0.97003 * 120.00536 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2812 6 8 1.9983 1.2519 -2.2504 7 6 2.7246 -0.5760 -3.5476 8 6 2.8674 0.4897 -4.6359 9 6 3.3820 -0.1602 -5.9218 10 6 3.5221 0.8895 -6.9941 11 6 2.4943 1.2048 -7.8660 12 6 2.7818 2.1600 -8.7516 13 16 4.4358 2.7079 -8.5121 14 6 4.6476 1.5812 -7.1783 15 6 2.0324 -0.7105 1.2304 16 8 2.7296 -1.6966 1.1190 17 7 1.7068 -0.2500 2.4545 18 6 0.8650 0.9415 2.5890 19 6 2.1947 -0.9410 3.6507 20 6 3.5225 -0.3580 4.0611 21 1 3.9593 0.4464 3.4879 22 6 4.1799 -0.8523 5.1675 23 7 3.6482 -1.8322 5.8651 24 14 5.8253 -0.1293 5.6766 25 1 5.6013 0.9951 6.6205 26 1 6.6425 -1.1769 6.3399 27 1 6.5404 0.3688 4.4742 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 3.6949 -1.0355 -3.3589 32 1 2.0193 -1.3389 -3.8770 33 1 1.8969 0.9488 -4.8245 34 1 3.5725 1.2529 -4.3068 35 1 4.3524 -0.6195 -5.7336 36 1 2.6766 -0.9233 -6.2508 37 1 1.5315 0.7170 -7.8297 38 1 2.1041 2.5362 -9.5037 39 1 5.5509 1.4667 -6.5975 40 1 -0.1830 0.6440 2.6222 41 1 1.1229 1.4666 3.5086 42 1 1.0289 1.6002 1.7362 43 1 1.4767 -0.8154 4.4611 44 1 2.3155 -2.0023 3.4334 45 1 4.1106 -2.1797 6.6438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783265200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:01 Heat of formation + Delta-G solvation = -112.813002 kcal Electronic energy + Delta-G solvation = -26197.691565 eV Core-core repulsion = 22306.349961 eV Total energy + Delta-G solvation = -3891.341605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92422 -40.58111 -39.34782 -37.73247 -36.73761 -35.23212 -34.92150 -33.03837 -31.06695 -29.59184 -28.60924 -27.73156 -26.02601 -25.10658 -24.02422 -22.81838 -21.48761 -20.45456 -19.65155 -19.02164 -18.68550 -18.43187 -18.06003 -17.56172 -17.28947 -16.78703 -16.49260 -16.09103 -15.92561 -15.45345 -14.81960 -14.69386 -14.51254 -14.28829 -14.16022 -13.86944 -13.78810 -13.56746 -13.55698 -13.34912 -13.32824 -13.01467 -12.83787 -12.69635 -12.64524 -12.58068 -12.43323 -12.35668 -12.22394 -11.91547 -11.74095 -11.67401 -11.58854 -11.49634 -10.65848 -10.62542 -9.68200 -9.53063 -9.26777 -8.24933 -6.39541 0.13202 0.80417 1.10834 1.12570 1.34759 1.36420 1.38448 1.48480 1.61171 1.82396 2.32236 2.44861 3.04854 3.39651 3.57038 3.78002 3.83031 3.85289 3.99542 4.16586 4.29183 4.31115 4.43982 4.52060 4.55760 4.62272 4.64984 4.67793 4.71451 4.76005 4.87151 4.93198 4.94958 5.05711 5.09709 5.18725 5.20916 5.31941 5.42192 5.50136 5.58429 5.63798 5.76862 6.02081 6.53620 6.68185 6.69246 7.19220 7.34617 8.82237 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.001869 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.130256 B =14980.630988 C =15865.277245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.111 0.889 4 O -0.346 6.346 5 C 0.456 3.544 6 O -0.534 6.534 7 C -0.108 4.108 8 C -0.093 4.093 9 C -0.055 4.055 10 C -0.107 4.107 11 C -0.141 4.141 12 C -0.216 4.216 13 S 0.074 5.926 14 C -0.225 4.225 15 C 0.499 3.501 16 O -0.579 6.579 17 N -0.599 5.599 18 C 0.068 3.932 19 C 0.259 3.741 20 C -0.547 4.547 21 H 0.051 0.949 22 C 0.009 3.991 23 N -0.925 5.925 24 Si 0.967 3.033 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.276 1.276 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.157 0.843 38 H 0.182 0.818 39 H 0.171 0.829 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.034 0.966 44 H 0.002 0.998 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 8.032 -28.207 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.129 0.871 4 O -0.262 6.262 5 C 0.301 3.699 6 O -0.423 6.423 7 C -0.145 4.145 8 C -0.131 4.131 9 C -0.095 4.095 10 C -0.120 4.120 11 C -0.171 4.171 12 C -0.351 4.351 13 S 0.338 5.662 14 C -0.361 4.361 15 C 0.286 3.714 16 O -0.459 6.459 17 N -0.332 5.332 18 C -0.073 4.073 19 C 0.139 3.861 20 C -0.585 4.585 21 H 0.069 0.931 22 C -0.190 4.190 23 N -0.564 5.564 24 Si 0.791 3.209 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.201 1.201 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.174 0.826 38 H 0.199 0.801 39 H 0.188 0.812 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.905 8.871 -28.772 30.505 hybrid contribution 0.127 -0.713 1.474 1.643 sum -4.778 8.157 -27.297 28.888 Atomic orbital electron populations 1.22391 0.89296 1.04512 1.06054 1.22470 0.97828 0.96517 0.81161 0.87149 1.86636 1.76947 1.42535 1.20099 1.24743 0.73375 0.85853 0.85912 1.90627 1.49463 1.17620 1.84610 1.21601 1.05273 1.00518 0.87110 1.21309 1.02422 0.96629 0.92738 1.20326 1.03441 0.95242 0.90490 1.19150 0.93205 1.00320 0.99305 1.20391 1.01151 0.99471 0.96110 1.25912 0.99388 1.03543 1.06229 1.84337 1.10400 1.40549 1.30944 1.25740 1.03667 1.02811 1.03842 1.20701 0.80653 0.84855 0.85225 1.90657 1.39603 1.28748 1.86896 1.48047 1.50150 1.29513 1.05458 1.22234 0.94761 0.86293 1.04059 1.18857 0.93955 0.91832 0.81491 1.21679 1.05993 1.19266 1.11604 0.93095 1.25832 1.01762 0.95214 0.96200 1.70035 1.40670 1.26957 1.18746 0.85424 0.78741 0.78404 0.78283 1.18688 1.20451 1.20088 0.89459 0.91250 0.87168 0.86135 0.84681 0.91371 0.92558 0.89667 0.88615 0.82586 0.80056 0.81155 0.89560 0.90693 0.89462 0.94810 0.98010 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.19 71.98 0.66 -3.24 16 2 C 0.08 2.55 2.18 29.85 0.07 2.62 16 3 H 0.11 3.45 6.41 -2.39 -0.02 3.44 16 4 O -0.35 -11.27 9.41 -45.10 -0.42 -11.70 16 5 C 0.46 12.10 7.93 71.24 0.56 12.66 16 6 O -0.53 -16.13 15.20 21.98 0.33 -15.79 16 7 C -0.11 -1.77 5.81 29.85 0.17 -1.59 16 8 C -0.09 -1.42 4.49 30.59 0.14 -1.29 16 9 C -0.06 -0.62 5.47 29.85 0.16 -0.46 16 10 C -0.11 -1.54 5.06 -20.92 -0.11 -1.64 16 11 C -0.14 -1.86 9.98 21.22 0.21 -1.64 16 12 C -0.22 -2.74 11.23 66.72 0.75 -1.99 16 13 S 0.07 1.06 23.34 -56.49 -1.32 -0.26 16 14 C -0.23 -3.40 10.98 66.72 0.73 -2.66 16 15 C 0.50 21.80 7.15 87.65 0.63 22.43 16 16 O -0.58 -31.49 16.08 15.78 0.25 -31.24 16 17 N -0.60 -25.58 2.86 -851.12 -2.43 -28.01 16 18 C 0.07 1.98 8.80 127.77 1.12 3.11 16 19 C 0.26 13.96 5.16 85.63 0.44 14.41 16 20 C -0.55 -31.69 9.39 25.60 0.24 -31.45 16 21 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 22 C 0.01 0.54 5.46 84.65 0.46 1.00 16 23 N -0.92 -55.60 13.29 21.44 0.28 -55.32 16 24 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.11 2.16 4.53 -2.39 -0.01 2.15 16 31 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 34 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 36 H 0.10 0.75 8.13 -2.38 -0.02 0.73 16 37 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.09 1.95 6.95 -2.39 -0.02 1.93 16 41 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 42 H 0.09 2.06 6.01 -2.39 -0.01 2.05 16 43 H 0.03 1.80 8.07 -2.39 -0.02 1.79 16 44 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 45 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -79.48 392.08 5.96 -73.52 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.99 Total: 11.46 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.25 Total: 10.24 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.15 Total: -83.33 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: 0.16 Total: -58.73 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -1.32 Total: -0.26 kcal Total: -79.48 5.96 -73.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783265200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.295 kcal (2) G-P(sol) polarization free energy of solvation -79.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds