Wall clock time and date at job start Tue Mar 31 2020 22:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47384 * 2 1 4 4 O 1.42097 * 108.57317 * 65.51135 * 3 2 1 5 5 O 1.42093 * 108.57732 * 294.48771 * 3 2 1 6 6 C 1.81397 * 101.92061 * 179.97438 * 3 2 1 7 7 C 1.53005 * 109.46776 * 180.02562 * 6 3 2 8 8 N 1.46506 * 109.46773 * 180.02562 * 7 6 3 9 9 C 1.34773 * 119.99707 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09003 * 109.47117 * 60.00218 * 1 2 3 29 29 H 1.09003 * 109.47105 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47373 * 299.99989 * 1 2 3 31 31 H 1.09003 * 109.46838 * 239.99702 * 2 1 3 32 32 H 1.09000 * 109.46788 * 120.00469 * 2 1 3 33 33 H 1.08997 * 109.47468 * 60.00127 * 6 3 2 34 34 H 1.09003 * 109.47503 * 299.99886 * 6 3 2 35 35 H 1.08999 * 109.47178 * 60.00610 * 7 6 3 36 36 H 1.08992 * 109.47341 * 299.99794 * 7 6 3 37 37 H 0.97001 * 120.00254 * 0.02562 * 8 7 6 38 38 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 39 39 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 40 40 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 41 41 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 42 42 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 43 43 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 44 44 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7592 2.3231 1.2258 5 8 1.7593 2.3231 -1.2257 6 6 3.9330 1.4718 0.0008 7 6 4.6281 2.8348 0.0015 8 7 6.0805 2.6422 0.0016 9 6 6.9018 3.7107 0.0016 10 8 6.4387 4.8317 0.0021 11 6 8.3957 3.5127 0.0022 12 6 9.0909 4.8756 0.0028 13 1 8.7182 5.4733 0.8347 14 6 8.8038 5.5865 -1.2945 15 1 8.6352 5.0170 -2.1966 16 6 8.7563 6.9640 -1.3300 17 7 9.0875 7.6610 -0.2651 18 14 8.2216 7.8403 -2.8908 19 1 8.2550 9.3084 -2.6704 20 1 9.1438 7.4844 -3.9990 21 1 6.8403 7.4245 -3.2434 22 6 10.5780 4.6811 0.1505 23 6 11.2910 4.0271 -0.8368 24 6 12.6556 3.8520 -0.7032 25 6 13.3061 4.3237 0.4217 26 6 12.5922 4.9731 1.4115 27 6 11.2282 5.1515 1.2760 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.2261 0.9145 -0.8890 34 1 4.2253 0.9148 0.8910 35 1 4.3351 3.3916 0.8916 36 1 4.3359 3.3922 -0.8884 37 1 6.4509 1.7457 0.0008 38 1 8.6888 2.9554 -0.8875 39 1 8.6881 2.9558 0.8925 40 1 9.2911 7.2072 0.5676 41 1 10.7821 3.6552 -1.7139 42 1 13.2132 3.3444 -1.4764 43 1 14.3719 4.1846 0.5273 44 1 13.1004 5.3412 2.2905 45 1 10.6706 5.6592 2.0492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793378253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:23 Heat of formation + Delta-G solvation = -92.138059 kcal Electronic energy + Delta-G solvation = -26718.450607 eV Core-core repulsion = 22828.005535 eV Total energy + Delta-G solvation = -3890.445072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.27851 -38.33583 -37.27204 -36.33756 -35.31521 -34.15562 -33.61498 -31.55888 -30.88299 -30.12416 -28.80060 -25.50782 -24.66474 -23.29040 -22.51511 -21.67886 -20.45161 -19.64213 -19.09334 -17.33841 -17.02580 -16.72674 -16.47066 -16.00969 -15.80145 -15.49303 -15.32677 -14.76036 -14.50795 -14.12699 -13.86637 -13.67045 -13.61932 -13.14802 -12.98162 -12.86813 -12.50921 -12.50437 -12.35535 -12.30877 -12.27238 -12.03096 -11.92119 -11.87495 -11.46005 -11.31324 -10.94735 -10.80164 -10.68830 -10.44542 -10.14915 -10.02616 -9.66530 -9.10697 -8.79092 -8.62317 -8.26189 -8.15472 -7.64710 -6.22776 -3.90974 -0.44062 2.17582 2.23247 2.37855 3.16690 3.38765 3.51575 3.58785 3.61799 3.65294 3.73117 4.14704 4.17644 4.19333 4.51529 4.60606 4.67106 4.72540 4.99314 5.12813 5.17720 5.36501 5.47953 5.49315 5.54875 5.58510 5.61817 5.74575 5.78859 5.96016 6.04373 6.14599 6.29928 6.39995 6.64275 6.68456 6.77276 6.91504 7.18554 7.21027 7.36567 7.70616 7.84178 7.90354 8.21733 8.50562 8.91131 8.98397 9.78561 11.17561 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.002610 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.134523 B =10723.747668 C =11987.858734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.614 4.614 3 S 2.425 3.575 4 O -0.931 6.931 5 O -0.929 6.929 6 C -0.631 4.631 7 C 0.134 3.866 8 N -0.745 5.745 9 C 0.511 3.489 10 O -0.493 6.493 11 C -0.116 4.116 12 C 0.071 3.929 13 H 0.052 0.948 14 C -0.571 4.571 15 H 0.045 0.955 16 C 0.033 3.967 17 N -0.904 5.904 18 Si 1.062 2.938 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.288 1.288 22 C -0.031 4.031 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.395 0.605 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.270 0.730 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 -20.297 2.086 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.743 4.743 3 S 2.605 3.395 4 O -0.928 6.928 5 O -0.926 6.926 6 C -0.759 4.759 7 C 0.008 3.992 8 N -0.402 5.402 9 C 0.298 3.702 10 O -0.364 6.364 11 C -0.156 4.156 12 C 0.052 3.948 13 H 0.070 0.930 14 C -0.608 4.608 15 H 0.064 0.936 16 C -0.173 4.173 17 N -0.539 5.539 18 Si 0.891 3.109 19 H -0.209 1.209 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.032 4.032 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.229 0.771 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.666 -17.117 1.410 19.709 hybrid contribution 1.007 -2.885 0.558 3.106 sum -8.659 -20.002 1.968 21.884 Atomic orbital electron populations 1.21521 0.90258 1.04864 1.03950 1.30227 1.07652 1.24883 1.11540 1.08025 0.77704 0.78182 0.75632 1.93613 1.80716 1.72875 1.45577 1.93620 1.80671 1.72826 1.45524 1.30653 1.25885 1.07362 1.11972 1.20778 0.82548 0.91835 1.03998 1.46117 1.04736 1.09750 1.79632 1.20971 0.89509 0.84108 0.75638 1.90775 1.77182 1.23277 1.45118 1.21691 0.90471 1.01879 1.01555 1.17875 0.85820 0.90816 1.00265 0.93013 1.21528 1.52355 0.93648 0.93271 0.93627 1.25595 0.93484 0.94821 1.03411 1.70763 1.41848 1.39353 1.01974 0.83651 0.76389 0.76312 0.74536 1.20901 1.21763 1.21403 1.20821 0.99154 0.91835 0.91358 1.20911 0.93278 0.99748 0.98686 1.21011 0.94961 1.01254 0.97545 1.20827 0.98726 1.02063 0.95500 1.20966 0.94540 0.99984 0.98737 1.21069 0.94263 1.01221 0.98251 0.90693 0.90076 0.90708 0.84937 0.84965 0.84354 0.84415 0.90250 0.90096 0.77110 0.90150 0.91542 0.91870 0.86754 0.87460 0.87587 0.87453 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.92 37.16 0.37 -0.40 16 2 C -0.61 -2.59 6.52 37.16 0.24 -2.35 16 3 S 2.42 20.23 4.72 -107.50 -0.51 19.73 16 4 O -0.93 -11.36 18.10 -57.83 -1.05 -12.41 16 5 O -0.93 -11.57 18.10 -57.83 -1.05 -12.61 16 6 C -0.63 -4.42 5.92 37.16 0.22 -4.20 16 7 C 0.13 1.75 5.68 -4.04 -0.02 1.72 16 8 N -0.74 -10.46 5.56 -60.29 -0.33 -10.79 16 9 C 0.51 10.05 7.58 -10.99 -0.08 9.97 16 10 O -0.49 -12.39 15.02 5.55 0.08 -12.30 16 11 C -0.12 -2.18 4.94 -27.88 -0.14 -2.32 16 12 C 0.07 1.70 1.31 -92.92 -0.12 1.57 16 13 H 0.05 1.39 6.23 -51.93 -0.32 1.07 16 14 C -0.57 -15.53 6.40 -34.44 -0.22 -15.75 16 15 H 0.05 1.24 7.82 -52.49 -0.41 0.83 16 16 C 0.03 0.95 5.45 -17.82 -0.10 0.85 16 17 N -0.90 -27.75 13.63 55.43 0.76 -26.99 16 18 Si 1.06 26.55 29.91 -169.99 -5.08 21.46 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 23 C -0.11 -2.18 8.88 -39.59 -0.35 -2.53 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 25 C -0.15 -2.63 10.05 -39.58 -0.40 -3.03 16 26 C -0.12 -2.26 10.05 -39.59 -0.40 -2.66 16 27 C -0.13 -2.70 9.67 -39.59 -0.38 -3.08 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 33 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.14 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.40 3.93 8.47 -40.82 -0.35 3.59 16 38 H 0.08 1.40 7.87 -51.93 -0.41 0.99 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.27 8.17 6.68 -40.82 -0.27 7.90 16 41 H 0.11 2.24 7.80 -52.48 -0.41 1.83 16 42 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 45 H 0.11 2.27 7.95 -52.49 -0.42 1.85 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -40.05 391.95 -10.43 -50.48 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.88 Total: 3.60 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.28 Total: -26.07 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.42 Total: -37.79 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -2.01 Total: -37.32 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -5.08 Total: 21.46 kcal Atomic # 16 Polarization: 20.23 SS G_CDS: -0.51 Total: 19.73 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.05 -10.43 -50.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793378253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.656 kcal (2) G-P(sol) polarization free energy of solvation -40.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds