Wall clock time and date at job start Tue Mar 31 2020 22:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35679 * 117.00111 * 2 1 4 4 C 1.38690 * 120.12788 * 359.97438 * 3 2 1 5 5 C 1.38052 * 120.11783 * 180.02562 * 4 3 2 6 6 C 1.38742 * 120.37919 * 359.97326 * 5 4 3 7 7 F 1.35109 * 119.87086 * 179.97438 * 6 5 4 8 8 C 1.37959 * 120.25977 * 0.03035 * 6 5 4 9 9 C 1.39789 * 119.86988 * 359.71940 * 8 6 5 10 10 C 1.47405 * 120.18348 * 180.30256 * 9 8 6 11 11 O 1.21507 * 120.00211 * 180.23108 * 10 9 8 12 12 O 1.34754 * 119.99924 * 0.22017 * 10 9 8 13 13 C 1.45203 * 116.99873 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47039 * 30.01076 * 13 12 10 15 15 C 1.52999 * 109.47323 * 270.00725 * 13 12 10 16 16 C 1.50702 * 109.46861 * 150.00592 * 13 12 10 17 17 O 1.21279 * 120.00359 * 16.02785 * 16 13 12 18 18 N 1.34779 * 119.99542 * 196.02993 * 16 13 12 19 19 C 1.46499 * 120.00323 * 5.36295 * 18 16 13 20 20 C 1.46505 * 119.99618 * 185.36346 * 18 16 13 21 21 C 1.50700 * 109.47038 * 89.99821 * 20 18 16 22 22 H 1.07998 * 120.00055 * 0.02562 * 21 20 18 23 23 C 1.37871 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31517 * 120.00057 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00183 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47124 * 89.99634 * 25 23 21 27 27 H 1.48497 * 109.47061 * 209.99572 * 25 23 21 28 28 H 1.48502 * 109.46982 * 329.99775 * 25 23 21 29 29 H 1.09001 * 109.46896 * 299.99597 * 1 2 3 30 30 H 1.08996 * 109.47569 * 60.00052 * 1 2 3 31 31 H 1.09002 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.94021 * 0.02841 * 4 3 2 33 33 H 1.08002 * 119.80592 * 180.02562 * 5 4 3 34 34 H 1.07993 * 120.06317 * 180.02562 * 8 6 5 35 35 H 1.09001 * 109.46783 * 306.13285 * 15 13 12 36 36 H 1.08999 * 109.47182 * 66.13404 * 15 13 12 37 37 H 1.08999 * 109.46957 * 186.13737 * 15 13 12 38 38 H 1.09001 * 109.47008 * 84.82548 * 19 18 16 39 39 H 1.08993 * 109.47028 * 204.82291 * 19 18 16 40 40 H 1.09000 * 109.47070 * 324.82253 * 19 18 16 41 41 H 1.08994 * 109.47035 * 209.99804 * 20 18 16 42 42 H 1.09002 * 109.46951 * 330.00180 * 20 18 16 43 43 H 0.97007 * 119.99849 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2922 2.3737 -0.0005 5 6 1.9192 3.6037 -0.0011 6 6 3.3042 3.6852 -0.0005 7 9 3.9071 4.8943 -0.0016 8 6 4.0682 2.5365 -0.0001 9 6 3.4445 1.2855 0.0058 10 6 4.2541 0.0537 0.0130 11 8 3.7084 -1.0320 0.0139 12 8 5.5993 0.1317 0.0185 13 6 6.3322 -1.1218 0.0250 14 1 5.7496 -1.8860 -0.4895 15 6 6.5834 -1.5584 1.4697 16 6 7.6511 -0.9362 -0.6802 17 8 8.0778 0.1806 -0.8843 18 7 8.3564 -2.0113 -1.0842 19 6 7.7887 -3.3546 -0.9443 20 6 9.6907 -1.8365 -1.6633 21 6 10.7241 -1.8851 -0.5676 22 1 10.4177 -2.0319 0.4576 23 6 12.0609 -1.7432 -0.8739 24 7 12.9628 -1.7861 0.0823 25 14 12.5910 -1.4900 -2.6472 26 1 12.6221 -0.0369 -2.9518 27 1 13.9449 -2.0666 -2.8462 28 1 11.6273 -2.1652 -3.5531 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2136 2.3185 -0.0005 33 1 1.3281 4.5076 -0.0011 34 1 5.1461 2.6036 0.0008 35 1 7.0703 -0.7494 2.0142 36 1 5.6333 -1.7977 1.9473 37 1 7.2256 -2.4391 1.4766 38 1 7.1563 -3.5732 -1.8048 39 1 8.5951 -4.0859 -0.8909 40 1 7.1925 -3.4039 -0.0332 41 1 9.8831 -2.6349 -2.3799 42 1 9.7435 -0.8729 -2.1701 43 1 13.9033 -1.6859 -0.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818192023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:40 Heat of formation + Delta-G solvation = -157.777993 kcal Electronic energy + Delta-G solvation = -29364.987532 eV Core-core repulsion = 24905.482923 eV Total energy + Delta-G solvation = -4459.504609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.08708 -41.07351 -40.09146 -38.87663 -37.58133 -36.29949 -34.98996 -32.83300 -32.30004 -31.34786 -30.20421 -28.39480 -27.71212 -26.18343 -25.33623 -24.10485 -22.79832 -22.12283 -20.96188 -18.98343 -18.68083 -18.17642 -17.48172 -16.98997 -16.83386 -16.55309 -16.40209 -15.80600 -15.73357 -15.69527 -15.22137 -14.99239 -14.69134 -14.68552 -14.10912 -13.70999 -13.49884 -13.24271 -13.13267 -12.91978 -12.69428 -12.39063 -12.29482 -12.25892 -12.20558 -11.89088 -11.66574 -11.49040 -11.42393 -11.35953 -10.95042 -10.69377 -10.54259 -10.47848 -10.16702 -9.70392 -9.56494 -9.01648 -8.60558 -8.58153 -7.78301 -6.10607 -4.10115 0.21623 0.75637 2.29092 2.37953 2.74231 3.15998 3.24067 3.29177 3.35140 3.37350 3.73504 3.87766 4.14863 4.26590 4.38514 4.55826 4.66017 4.72410 4.75865 4.78862 4.96768 5.05886 5.10783 5.12238 5.23010 5.27808 5.46697 5.49868 5.56050 5.64008 5.72523 5.78361 5.80305 6.07202 6.22388 6.25681 6.37788 6.65476 6.82850 6.90911 7.24670 7.57250 7.72086 8.11434 8.43388 8.81663 8.92609 9.49161 11.02527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.002691 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.801893 B =10403.222125 C =11486.563212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.280 6.280 3 C 0.181 3.819 4 C -0.198 4.198 5 C -0.077 4.077 6 C 0.049 3.951 7 F -0.134 7.134 8 C -0.053 4.053 9 C -0.131 4.131 10 C 0.509 3.491 11 O -0.486 6.486 12 O -0.324 6.324 13 C 0.075 3.925 14 H 0.104 0.896 15 C -0.165 4.165 16 C 0.513 3.487 17 O -0.520 6.520 18 N -0.592 5.592 19 C 0.073 3.927 20 C 0.216 3.784 21 C -0.532 4.532 22 H 0.076 0.924 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.876 3.124 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.265 1.265 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.038 4.754 0.341 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.190 6.190 3 C 0.133 3.867 4 C -0.216 4.216 5 C -0.095 4.095 6 C 0.029 3.971 7 F -0.113 7.113 8 C -0.072 4.072 9 C -0.133 4.133 10 C 0.352 3.648 11 O -0.374 6.374 12 O -0.240 6.240 13 C 0.017 3.983 14 H 0.122 0.878 15 C -0.223 4.223 16 C 0.298 3.702 17 O -0.395 6.395 18 N -0.325 5.325 19 C -0.071 4.071 20 C 0.096 3.904 21 C -0.571 4.571 22 H 0.094 0.906 23 C -0.129 4.129 24 N -0.534 5.534 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.620 4.837 0.254 28.041 hybrid contribution 0.294 0.303 -0.769 0.877 sum -27.326 5.140 -0.515 27.810 Atomic orbital electron populations 1.23235 0.78113 1.04771 1.01441 1.86380 1.21307 1.24919 1.86423 1.18997 0.90395 0.85423 0.91871 1.21036 1.00742 0.90725 1.09129 1.21185 0.92789 0.98943 0.96630 1.17373 0.90755 0.80774 1.08151 1.91543 1.83642 1.41734 1.94342 1.21497 1.02317 0.89337 0.94047 1.18212 0.89470 0.91703 1.13913 1.20683 0.81556 0.88887 0.73648 1.90865 1.72583 1.29006 1.44942 1.86658 1.18329 1.35441 1.83572 1.22631 0.91922 0.84736 0.99058 0.87783 1.22174 1.03232 1.03435 0.93431 1.19777 0.85058 0.85485 0.79898 1.90689 1.70100 1.23769 1.54959 1.47737 1.18533 1.05090 1.61189 1.21866 0.99564 0.85112 1.00514 1.19740 0.78256 0.97701 0.94730 1.21318 0.90207 1.50652 0.94882 0.90626 1.24846 0.96402 0.94389 0.97290 1.69896 1.01386 1.49934 1.32213 0.86850 0.78213 0.79255 0.85390 1.19822 1.21035 1.19022 0.92267 0.92278 0.87612 0.83461 0.83712 0.81853 0.90487 0.91118 0.89341 0.93277 0.89887 0.91861 0.94850 0.94269 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.28 -3.00 8.57 -40.64 -0.35 -3.35 16 3 C 0.18 1.91 6.70 -38.69 -0.26 1.65 16 4 C -0.20 -1.45 9.03 -39.48 -0.36 -1.80 16 5 C -0.08 -0.58 10.01 -39.46 -0.39 -0.97 16 6 C 0.05 0.50 7.28 -39.50 -0.29 0.21 16 7 F -0.13 -1.50 17.26 2.25 0.04 -1.46 16 8 C -0.05 -0.62 9.59 -39.10 -0.37 -1.00 16 9 C -0.13 -1.66 5.88 -104.86 -0.62 -2.28 16 10 C 0.51 7.81 7.86 34.46 0.27 8.08 16 11 O -0.49 -8.01 14.42 -26.60 -0.38 -8.39 16 12 O -0.32 -5.52 8.72 -47.17 -0.41 -5.93 16 13 C 0.07 1.27 2.14 -27.88 -0.06 1.21 16 14 H 0.10 1.60 6.32 -51.93 -0.33 1.27 16 15 C -0.17 -2.45 9.19 37.16 0.34 -2.11 16 16 C 0.51 10.89 6.95 -10.98 -0.08 10.82 16 17 O -0.52 -13.17 16.13 -13.54 -0.22 -13.39 16 18 N -0.59 -12.32 2.86 -182.95 -0.52 -12.84 16 19 C 0.07 1.13 9.79 59.85 0.59 1.71 16 20 C 0.22 5.28 4.25 -5.19 -0.02 5.26 16 21 C -0.53 -15.15 9.94 -34.44 -0.34 -15.50 16 22 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 23 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 24 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 25 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.15 0.60 6.29 -52.49 -0.33 0.27 16 33 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 34 H 0.16 2.02 7.61 -52.49 -0.40 1.62 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.26 6.33 -51.93 -0.33 0.93 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 40 H 0.06 0.83 4.92 -51.93 -0.26 0.58 16 41 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 42 H 0.04 1.03 6.78 -51.93 -0.35 0.67 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -36.44 369.75 -6.15 -42.59 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.28 Total: -1.34 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -0.70 Total: 8.41 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.25 Total: -39.54 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.36 Total: -31.06 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.44 -6.15 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818192023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.187 kcal (2) G-P(sol) polarization free energy of solvation -36.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds