Wall clock time and date at job start Tue Mar 31 2020 22:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35679 * 117.00111 * 2 1 4 4 C 1.38690 * 120.12788 * 359.97438 * 3 2 1 5 5 C 1.38052 * 120.11783 * 180.02562 * 4 3 2 6 6 C 1.38742 * 120.37919 * 359.97326 * 5 4 3 7 7 F 1.35109 * 119.87086 * 179.97438 * 6 5 4 8 8 C 1.37959 * 120.25977 * 0.03035 * 6 5 4 9 9 C 1.39789 * 119.86988 * 359.71940 * 8 6 5 10 10 C 1.47405 * 120.18348 * 180.30256 * 9 8 6 11 11 O 1.21507 * 120.00211 * 180.23108 * 10 9 8 12 12 O 1.34754 * 119.99924 * 0.22017 * 10 9 8 13 13 C 1.45203 * 116.99873 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47039 * 30.01076 * 13 12 10 15 15 C 1.52999 * 109.47323 * 270.00725 * 13 12 10 16 16 C 1.50702 * 109.46861 * 150.00592 * 13 12 10 17 17 O 1.21279 * 120.00359 * 16.02785 * 16 13 12 18 18 N 1.34779 * 119.99542 * 196.02993 * 16 13 12 19 19 C 1.46499 * 120.00323 * 5.36295 * 18 16 13 20 20 C 1.46505 * 119.99618 * 185.36346 * 18 16 13 21 21 C 1.50700 * 109.47038 * 89.99821 * 20 18 16 22 22 H 1.07998 * 120.00055 * 0.02562 * 21 20 18 23 23 C 1.37871 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31517 * 120.00057 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00183 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47124 * 89.99634 * 25 23 21 27 27 H 1.48497 * 109.47061 * 209.99572 * 25 23 21 28 28 H 1.48502 * 109.46982 * 329.99775 * 25 23 21 29 29 H 1.09001 * 109.46896 * 299.99597 * 1 2 3 30 30 H 1.08996 * 109.47569 * 60.00052 * 1 2 3 31 31 H 1.09002 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.94021 * 0.02841 * 4 3 2 33 33 H 1.08002 * 119.80592 * 180.02562 * 5 4 3 34 34 H 1.07993 * 120.06317 * 180.02562 * 8 6 5 35 35 H 1.09001 * 109.46783 * 306.13285 * 15 13 12 36 36 H 1.08999 * 109.47182 * 66.13404 * 15 13 12 37 37 H 1.08999 * 109.46957 * 186.13737 * 15 13 12 38 38 H 1.09001 * 109.47008 * 84.82548 * 19 18 16 39 39 H 1.08993 * 109.47028 * 204.82291 * 19 18 16 40 40 H 1.09000 * 109.47070 * 324.82253 * 19 18 16 41 41 H 1.08994 * 109.47035 * 209.99804 * 20 18 16 42 42 H 1.09002 * 109.46951 * 330.00180 * 20 18 16 43 43 H 0.97007 * 119.99849 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2922 2.3737 -0.0005 5 6 1.9192 3.6037 -0.0011 6 6 3.3042 3.6852 -0.0005 7 9 3.9071 4.8943 -0.0016 8 6 4.0682 2.5365 -0.0001 9 6 3.4445 1.2855 0.0058 10 6 4.2541 0.0537 0.0130 11 8 3.7084 -1.0320 0.0139 12 8 5.5993 0.1317 0.0185 13 6 6.3322 -1.1218 0.0250 14 1 5.7496 -1.8860 -0.4895 15 6 6.5834 -1.5584 1.4697 16 6 7.6511 -0.9362 -0.6802 17 8 8.0778 0.1806 -0.8843 18 7 8.3564 -2.0113 -1.0842 19 6 7.7887 -3.3546 -0.9443 20 6 9.6907 -1.8365 -1.6633 21 6 10.7241 -1.8851 -0.5676 22 1 10.4177 -2.0319 0.4576 23 6 12.0609 -1.7432 -0.8739 24 7 12.9628 -1.7861 0.0823 25 14 12.5910 -1.4900 -2.6472 26 1 12.6221 -0.0369 -2.9518 27 1 13.9449 -2.0666 -2.8462 28 1 11.6273 -2.1652 -3.5531 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2136 2.3185 -0.0005 33 1 1.3281 4.5076 -0.0011 34 1 5.1461 2.6036 0.0008 35 1 7.0703 -0.7494 2.0142 36 1 5.6333 -1.7977 1.9473 37 1 7.2256 -2.4391 1.4766 38 1 7.1563 -3.5732 -1.8048 39 1 8.5951 -4.0859 -0.8909 40 1 7.1925 -3.4039 -0.0332 41 1 9.8831 -2.6349 -2.3799 42 1 9.7435 -0.8729 -2.1701 43 1 13.9033 -1.6859 -0.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818192023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:39 Heat of formation + Delta-G solvation = -180.901162 kcal Electronic energy + Delta-G solvation = -29365.990227 eV Core-core repulsion = 24905.482923 eV Total energy + Delta-G solvation = -4460.507305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.90667 -42.11649 -41.19149 -40.30971 -38.31014 -37.57865 -36.74538 -34.82818 -33.50165 -32.50496 -30.91727 -30.28025 -28.20538 -27.64227 -26.43272 -25.53517 -24.03042 -23.25717 -22.13208 -20.41946 -19.75901 -19.15604 -18.99125 -18.49536 -17.94885 -17.75659 -17.39286 -17.16507 -16.79017 -16.58017 -16.44348 -16.28599 -15.95994 -15.70427 -15.39895 -14.94343 -14.77686 -14.37404 -14.35221 -14.03282 -13.88756 -13.76313 -13.69463 -13.48366 -13.35757 -13.21178 -12.91220 -12.87844 -12.64118 -12.46435 -12.35235 -12.04829 -11.97079 -11.93538 -11.75111 -11.58988 -10.84034 -10.71520 -10.45274 -9.52414 -9.32589 -8.34731 -6.40386 -0.59729 0.01484 1.14876 1.31038 1.33586 1.37469 1.45423 1.51193 2.13662 2.28293 2.30876 2.41199 2.99483 3.06346 3.34222 3.39722 3.56865 3.69495 3.78843 3.85765 3.96607 4.16497 4.25963 4.35735 4.44151 4.48402 4.54137 4.56375 4.59998 4.74585 4.75137 4.79613 4.83721 4.89930 4.91927 4.96034 5.04749 5.19671 5.42093 5.49272 5.50492 6.20415 6.21782 6.44318 6.58407 6.61178 7.11414 7.26511 8.81831 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.002691 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.801893 B =10403.222125 C =11486.563212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.308 6.308 3 C 0.182 3.818 4 C -0.180 4.180 5 C -0.054 4.054 6 C 0.035 3.965 7 F -0.143 7.143 8 C -0.067 4.067 9 C -0.162 4.162 10 C 0.507 3.493 11 O -0.502 6.502 12 O -0.342 6.342 13 C 0.083 3.917 14 H 0.125 0.875 15 C -0.159 4.159 16 C 0.504 3.496 17 O -0.574 6.574 18 N -0.597 5.597 19 C 0.065 3.935 20 C 0.222 3.778 21 C -0.539 4.539 22 H 0.034 0.966 23 C 0.013 3.987 24 N -0.943 5.943 25 Si 0.945 3.055 26 H -0.278 1.278 27 H -0.274 1.274 28 H -0.237 1.237 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.191 0.809 33 H 0.184 0.816 34 H 0.142 0.858 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.669 4.572 -0.937 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.220 6.220 3 C 0.134 3.866 4 C -0.198 4.198 5 C -0.073 4.073 6 C 0.016 3.984 7 F -0.122 7.122 8 C -0.086 4.086 9 C -0.164 4.164 10 C 0.353 3.647 11 O -0.391 6.391 12 O -0.259 6.259 13 C 0.025 3.975 14 H 0.143 0.857 15 C -0.216 4.216 16 C 0.291 3.709 17 O -0.453 6.453 18 N -0.329 5.329 19 C -0.077 4.077 20 C 0.101 3.899 21 C -0.577 4.577 22 H 0.052 0.948 23 C -0.185 4.185 24 N -0.583 5.583 25 Si 0.768 3.232 26 H -0.203 1.203 27 H -0.199 1.199 28 H -0.160 1.160 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.208 0.792 33 H 0.201 0.799 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -31.300 4.603 -1.018 31.653 hybrid contribution 1.277 0.364 -0.278 1.357 sum -30.023 4.967 -1.296 30.458 Atomic orbital electron populations 1.23602 0.75428 1.06158 1.03470 1.86341 1.24180 1.25336 1.86134 1.19170 0.89645 0.86672 0.91152 1.21473 1.02489 0.89098 1.06708 1.21601 0.91435 1.00610 0.93624 1.17562 0.91986 0.79796 1.09067 1.91518 1.84092 1.42072 1.94529 1.21317 1.01590 0.90182 0.95534 1.18191 0.90539 0.90550 1.17129 1.21181 0.80761 0.89877 0.72898 1.90827 1.72463 1.29674 1.46163 1.86678 1.19684 1.35537 1.83977 1.22524 0.89851 0.85427 0.99683 0.85713 1.22157 1.04437 1.02974 0.92046 1.20580 0.86393 0.84748 0.79193 1.90649 1.71788 1.25848 1.57050 1.47825 1.17337 1.07267 1.60482 1.22206 1.00156 0.82094 1.03235 1.19458 0.79252 0.97480 0.93747 1.21531 0.91645 1.50305 0.94234 0.94764 1.25811 0.96387 0.93927 1.02363 1.70041 1.01958 1.51365 1.34914 0.85750 0.78720 0.79011 0.79706 1.20339 1.19912 1.15992 0.90096 0.90202 0.86830 0.79209 0.79904 0.84062 0.92114 0.88739 0.88684 0.89999 0.89884 0.89564 0.92387 0.96149 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 -6.00 8.57 -69.03 -0.59 -6.59 16 3 C 0.18 3.50 6.70 22.85 0.15 3.66 16 4 C -0.18 -1.92 9.03 22.33 0.20 -1.72 16 5 C -0.05 -0.63 10.01 22.35 0.22 -0.41 16 6 C 0.04 0.69 7.28 22.32 0.16 0.85 16 7 F -0.14 -3.18 17.26 44.97 0.78 -2.40 16 8 C -0.07 -1.65 9.59 22.58 0.22 -1.44 16 9 C -0.16 -4.16 5.88 -20.02 -0.12 -4.28 16 10 C 0.51 15.93 7.86 70.24 0.55 16.48 16 11 O -0.50 -16.43 14.42 26.82 0.39 -16.04 16 12 O -0.34 -12.19 8.72 -50.41 -0.44 -12.63 16 13 C 0.08 2.85 2.14 29.85 0.06 2.91 16 14 H 0.13 3.71 6.32 -2.39 -0.02 3.70 16 15 C -0.16 -4.72 9.19 71.98 0.66 -4.06 16 16 C 0.50 22.03 6.95 87.66 0.61 22.64 16 17 O -0.57 -30.66 16.13 15.23 0.25 -30.42 16 18 N -0.60 -24.93 2.86 -851.13 -2.43 -27.36 16 19 C 0.06 1.89 9.79 127.77 1.25 3.14 16 20 C 0.22 10.93 4.25 85.63 0.36 11.30 16 21 C -0.54 -31.63 9.94 25.60 0.25 -31.38 16 22 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 23 C 0.01 0.80 5.47 84.65 0.46 1.26 16 24 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 25 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 26 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 28 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 29 H 0.08 0.25 7.66 -2.39 -0.02 0.23 16 30 H 0.08 0.27 7.66 -2.39 -0.02 0.25 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.19 0.40 6.29 -2.91 -0.02 0.38 16 33 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.14 3.96 7.61 -2.91 -0.02 3.94 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.09 2.66 6.33 -2.39 -0.02 2.65 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 40 H 0.09 2.11 4.92 -2.39 -0.01 2.10 16 41 H 0.06 2.57 7.13 -2.39 -0.02 2.55 16 42 H 0.02 1.08 6.78 -2.39 -0.02 1.07 16 43 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -84.91 369.75 7.30 -77.61 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.00 Total: 10.57 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 6.17 Total: 20.12 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.13 Total: -86.63 kcal Atomic # 8 Polarization: -65.28 SS G_CDS: -0.40 Total: -65.68 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -84.91 7.30 -77.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818192023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.292 kcal (2) G-P(sol) polarization free energy of solvation -84.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds