Wall clock time and date at job start Tue Mar 31 2020 23:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46495 * 120.00087 * 2 1 4 4 C 1.52999 * 109.47672 * 293.48957 * 3 2 1 5 5 O 1.42902 * 110.26787 * 64.84349 * 4 3 2 6 6 C 1.54347 * 110.30061 * 302.77526 * 4 3 2 7 7 C 1.54344 * 102.38754 * 214.72566 * 6 4 3 8 8 C 1.51364 * 105.17422 * 26.34999 * 7 6 4 9 9 C 1.38500 * 130.39682 * 162.81290 * 8 7 6 10 10 C 1.38105 * 120.21503 * 179.97438 * 9 8 7 11 11 C 1.38256 * 119.93902 * 0.02562 * 10 9 8 12 12 C 1.38101 * 119.92773 * 359.97438 * 11 10 9 13 13 C 1.38361 * 120.26984 * 359.91070 * 12 11 10 14 14 S 1.65606 * 120.00314 * 180.02562 * 2 1 3 15 15 O 1.42107 * 104.27611 * 28.96131 * 14 2 1 16 16 O 1.42094 * 104.28173 * 156.82475 * 14 2 1 17 17 C 1.81402 * 104.44589 * 272.89371 * 14 2 1 18 18 C 1.53000 * 109.47273 * 179.97438 * 17 14 2 19 19 C 1.50699 * 109.47427 * 179.97438 * 18 17 14 20 20 H 1.08004 * 119.99552 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00164 * 180.02562 * 19 18 17 22 22 N 1.31504 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47204 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47202 * 120.00167 * 23 21 19 26 26 H 1.48497 * 109.47421 * 240.00303 * 23 21 19 27 27 H 1.09001 * 109.47431 * 94.42984 * 1 2 3 28 28 H 1.09006 * 109.46801 * 214.42394 * 1 2 3 29 29 H 1.09002 * 109.47190 * 334.42445 * 1 2 3 30 30 H 1.09004 * 109.47121 * 173.48363 * 3 2 1 31 31 H 1.09007 * 109.46581 * 53.48946 * 3 2 1 32 32 H 0.96697 * 113.99635 * 179.97438 * 5 4 3 33 33 H 1.09005 * 110.82260 * 332.94877 * 6 4 3 34 34 H 1.08999 * 110.82202 * 96.30258 * 6 4 3 35 35 H 1.09002 * 110.30120 * 145.27197 * 7 6 4 36 36 H 1.09004 * 110.30554 * 267.32106 * 7 6 4 37 37 H 1.07995 * 119.88949 * 359.97384 * 9 8 7 38 38 H 1.07996 * 120.02921 * 179.97438 * 10 9 8 39 39 H 1.07989 * 120.03313 * 180.02562 * 11 10 9 40 40 H 1.08002 * 119.88742 * 180.02562 * 12 11 10 41 41 H 1.08999 * 109.47301 * 299.99880 * 17 14 2 42 42 H 1.09007 * 109.47341 * 59.99855 * 17 14 2 43 43 H 1.08999 * 109.47268 * 300.00401 * 18 17 14 44 44 H 1.09007 * 109.46646 * 59.99930 * 18 17 14 45 45 H 0.97008 * 120.00120 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 1.9546 1.9979 -1.3229 5 8 0.5781 2.3629 -1.4416 6 6 2.3767 1.1073 -2.5107 7 6 2.9250 2.1387 -3.5195 8 6 3.3931 3.3062 -2.6776 9 6 4.2399 4.3564 -2.9911 10 6 4.5281 5.3224 -2.0471 11 6 3.9705 5.2414 -0.7845 12 6 3.1259 4.1950 -0.4701 13 6 2.8333 3.2270 -1.4145 14 16 2.2931 -1.4341 -0.0006 15 8 1.4248 -2.3399 -0.6679 16 8 3.5646 -1.1045 -0.5424 17 6 2.4426 -1.8712 1.7536 18 6 3.1983 -3.1948 1.8869 19 6 3.3230 -3.5576 3.3442 20 1 2.9047 -2.9091 4.0998 21 6 3.9712 -4.7173 3.7129 22 7 4.4809 -5.5066 2.7929 23 14 4.1264 -5.1666 5.5194 24 1 3.4742 -4.1205 6.3475 25 1 3.4651 -6.4737 5.7630 26 1 5.5627 -5.2629 5.8839 27 1 -0.3634 -0.0794 -1.0246 28 1 -0.3633 -0.8478 0.5810 29 1 -0.3634 0.9270 0.4437 30 1 3.2634 1.0728 0.1166 31 1 1.8495 1.8890 0.8261 32 1 0.3641 2.8292 -2.2612 33 1 3.1558 0.4060 -2.2115 34 1 1.5177 0.5772 -2.9220 35 1 3.7606 1.7153 -4.0769 36 1 2.1370 2.4551 -4.2030 37 1 4.6762 4.4201 -3.9769 38 1 5.1891 6.1398 -2.2946 39 1 4.1945 5.9961 -0.0453 40 1 2.6903 4.1326 0.5162 41 1 2.9878 -1.0867 2.2783 42 1 1.4483 -1.9755 2.1881 43 1 2.6527 -3.9791 1.3622 44 1 4.1925 -3.0908 1.4523 45 1 4.9373 -6.3224 3.0523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827850175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:29 Heat of formation + Delta-G solvation = -97.153923 kcal Electronic energy + Delta-G solvation = -28038.785136 eV Core-core repulsion = 24148.122561 eV Total energy + Delta-G solvation = -3890.662576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80953 -37.73949 -36.64003 -35.57782 -35.28347 -34.25005 -33.88834 -31.57786 -31.15907 -29.19845 -28.81301 -26.04208 -25.55093 -23.91626 -22.89408 -21.57865 -21.17900 -20.39031 -18.56218 -17.85836 -17.24682 -16.45543 -16.15776 -15.91143 -15.75888 -15.40074 -15.16676 -15.00545 -14.55242 -14.47178 -14.11235 -13.54234 -13.36368 -13.18230 -13.07694 -12.88856 -12.75189 -12.49278 -12.34935 -12.13029 -11.79054 -11.72310 -11.61373 -11.45427 -11.27613 -11.21226 -11.14678 -11.09149 -10.94355 -10.81446 -10.39115 -10.38404 -10.10415 -9.76095 -9.30763 -9.10060 -8.87321 -8.69034 -8.50962 -6.12733 -4.18219 0.74898 1.07003 1.16512 3.03090 3.25280 3.32532 3.36106 3.48805 4.00823 4.19662 4.25529 4.31722 4.40026 4.61362 4.65530 4.76159 4.79888 4.86484 5.00045 5.02492 5.22510 5.25077 5.31684 5.40814 5.51210 5.58889 5.59607 5.68919 5.69979 5.76432 5.79897 5.82403 5.90069 6.07873 6.13219 6.17122 6.23284 6.27443 6.39265 6.49076 6.68976 6.75812 7.29606 7.35536 7.45504 7.80597 8.17446 8.85422 9.46620 10.98353 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.002900 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.201138 B = 9652.522757 C =10176.060911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -1.004 6.004 3 C 0.139 3.861 4 C 0.166 3.834 5 O -0.541 6.541 6 C -0.158 4.158 7 C -0.087 4.087 8 C -0.083 4.083 9 C -0.113 4.113 10 C -0.111 4.111 11 C -0.127 4.127 12 C -0.085 4.085 13 C -0.129 4.129 14 S 2.585 3.415 15 O -0.961 6.961 16 O -0.964 6.964 17 C -0.590 4.590 18 C 0.028 3.972 19 C -0.520 4.520 20 H 0.062 0.938 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.373 0.627 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 22.152 -10.487 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.839 5.839 3 C 0.013 3.987 4 C 0.124 3.876 5 O -0.346 6.346 6 C -0.196 4.196 7 C -0.124 4.124 8 C -0.083 4.083 9 C -0.131 4.131 10 C -0.129 4.129 11 C -0.145 4.145 12 C -0.103 4.103 13 C -0.130 4.130 14 S 2.684 3.316 15 O -0.952 6.952 16 O -0.954 6.954 17 C -0.724 4.724 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.220 0.780 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.833 21.256 -10.731 24.296 hybrid contribution 0.115 0.255 1.060 1.096 sum -4.718 21.511 -9.671 24.052 Atomic orbital electron populations 1.21307 0.78191 1.02201 1.01986 1.57563 1.15398 1.20658 1.90310 1.21288 0.97528 0.84604 0.95272 1.20925 0.80668 0.89554 0.96452 1.86580 1.24262 1.78962 1.44805 1.23169 1.03143 0.98183 0.95101 1.21114 1.01047 0.92797 0.97437 1.20701 0.96443 0.95782 0.95417 1.20633 0.98516 0.94168 0.99774 1.21087 0.99621 0.98645 0.93590 1.21074 0.98029 0.98441 0.96913 1.20650 0.97346 0.93415 0.98938 1.21063 0.99675 0.97367 0.94858 1.05867 0.73655 0.72706 0.79358 1.93543 1.66198 1.62926 1.72505 1.93513 1.41993 1.82498 1.77409 1.30496 1.10192 1.10763 1.20931 1.18969 0.95006 0.87107 1.00038 1.21047 1.36977 1.06923 0.90974 0.91979 1.25071 0.95210 0.96195 0.98042 1.69963 1.36842 1.13132 1.32907 0.86413 0.77921 0.78463 0.84496 1.19625 1.20779 1.20776 0.92584 0.92067 0.90833 0.87614 0.90482 0.78015 0.87983 0.89526 0.90045 0.90192 0.86181 0.85863 0.85761 0.85954 0.86266 0.86261 0.94889 0.94846 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.33 8.74 59.84 0.52 1.85 16 2 N -1.00 -14.07 2.75 -121.76 -0.34 -14.40 16 3 C 0.14 1.75 4.67 -4.05 -0.02 1.73 16 4 C 0.17 1.89 1.00 -90.74 -0.09 1.80 16 5 O -0.54 -5.49 11.31 -35.23 -0.40 -5.89 16 6 C -0.16 -1.91 5.85 -25.32 -0.15 -2.06 16 7 C -0.09 -0.84 6.77 -26.85 -0.18 -1.02 16 8 C -0.08 -0.87 6.14 -104.14 -0.64 -1.51 16 9 C -0.11 -1.04 10.04 -39.53 -0.40 -1.44 16 10 C -0.11 -0.95 10.05 -39.62 -0.40 -1.35 16 11 C -0.13 -1.11 10.05 -39.62 -0.40 -1.51 16 12 C -0.09 -0.85 9.78 -39.59 -0.39 -1.23 16 13 C -0.13 -1.40 5.25 -104.20 -0.55 -1.95 16 14 S 2.59 47.12 5.37 -107.50 -0.58 46.55 16 15 O -0.96 -20.16 17.28 -57.54 -0.99 -21.16 16 16 O -0.96 -19.27 14.78 -57.54 -0.85 -20.12 16 17 C -0.59 -11.52 6.12 37.16 0.23 -11.30 16 18 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 19 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 20 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.56 13.28 55.43 0.74 -25.82 16 23 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.06 0.72 8.02 -51.93 -0.42 0.31 16 29 H 0.07 0.78 7.73 -51.93 -0.40 0.37 16 30 H 0.11 1.40 6.93 -51.93 -0.36 1.04 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.37 2.71 9.03 45.56 0.41 3.12 16 33 H 0.10 1.50 6.06 -51.93 -0.31 1.19 16 34 H 0.09 1.02 8.10 -51.93 -0.42 0.59 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 42 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -34.67 378.87 -10.85 -45.52 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.11 Total: 4.03 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -3.01 Total: -30.66 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.40 Total: -40.22 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -2.24 Total: -47.17 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 47.12 SS G_CDS: -0.58 Total: 46.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.67 -10.85 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827850175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.634 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds