Wall clock time and date at job start Tue Mar 31 2020 23:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46495 * 120.00087 * 2 1 4 4 C 1.52999 * 109.47672 * 293.48957 * 3 2 1 5 5 O 1.42902 * 110.26787 * 64.84349 * 4 3 2 6 6 C 1.54347 * 110.30061 * 302.77526 * 4 3 2 7 7 C 1.54344 * 102.38754 * 214.72566 * 6 4 3 8 8 C 1.51364 * 105.17422 * 26.34999 * 7 6 4 9 9 C 1.38500 * 130.39682 * 162.81290 * 8 7 6 10 10 C 1.38105 * 120.21503 * 179.97438 * 9 8 7 11 11 C 1.38256 * 119.93902 * 0.02562 * 10 9 8 12 12 C 1.38101 * 119.92773 * 359.97438 * 11 10 9 13 13 C 1.38361 * 120.26984 * 359.91070 * 12 11 10 14 14 S 1.65606 * 120.00314 * 180.02562 * 2 1 3 15 15 O 1.42107 * 104.27611 * 28.96131 * 14 2 1 16 16 O 1.42094 * 104.28173 * 156.82475 * 14 2 1 17 17 C 1.81402 * 104.44589 * 272.89371 * 14 2 1 18 18 C 1.53000 * 109.47273 * 179.97438 * 17 14 2 19 19 C 1.50699 * 109.47427 * 179.97438 * 18 17 14 20 20 H 1.08004 * 119.99552 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00164 * 180.02562 * 19 18 17 22 22 N 1.31504 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47204 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47202 * 120.00167 * 23 21 19 26 26 H 1.48497 * 109.47421 * 240.00303 * 23 21 19 27 27 H 1.09001 * 109.47431 * 94.42984 * 1 2 3 28 28 H 1.09006 * 109.46801 * 214.42394 * 1 2 3 29 29 H 1.09002 * 109.47190 * 334.42445 * 1 2 3 30 30 H 1.09004 * 109.47121 * 173.48363 * 3 2 1 31 31 H 1.09007 * 109.46581 * 53.48946 * 3 2 1 32 32 H 0.96697 * 113.99635 * 179.97438 * 5 4 3 33 33 H 1.09005 * 110.82260 * 332.94877 * 6 4 3 34 34 H 1.08999 * 110.82202 * 96.30258 * 6 4 3 35 35 H 1.09002 * 110.30120 * 145.27197 * 7 6 4 36 36 H 1.09004 * 110.30554 * 267.32106 * 7 6 4 37 37 H 1.07995 * 119.88949 * 359.97384 * 9 8 7 38 38 H 1.07996 * 120.02921 * 179.97438 * 10 9 8 39 39 H 1.07989 * 120.03313 * 180.02562 * 11 10 9 40 40 H 1.08002 * 119.88742 * 180.02562 * 12 11 10 41 41 H 1.08999 * 109.47301 * 299.99880 * 17 14 2 42 42 H 1.09007 * 109.47341 * 59.99855 * 17 14 2 43 43 H 1.08999 * 109.47268 * 300.00401 * 18 17 14 44 44 H 1.09007 * 109.46646 * 59.99930 * 18 17 14 45 45 H 0.97008 * 120.00120 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 1.9546 1.9979 -1.3229 5 8 0.5781 2.3629 -1.4416 6 6 2.3767 1.1073 -2.5107 7 6 2.9250 2.1387 -3.5195 8 6 3.3931 3.3062 -2.6776 9 6 4.2399 4.3564 -2.9911 10 6 4.5281 5.3224 -2.0471 11 6 3.9705 5.2414 -0.7845 12 6 3.1259 4.1950 -0.4701 13 6 2.8333 3.2270 -1.4145 14 16 2.2931 -1.4341 -0.0006 15 8 1.4248 -2.3399 -0.6679 16 8 3.5646 -1.1045 -0.5424 17 6 2.4426 -1.8712 1.7536 18 6 3.1983 -3.1948 1.8869 19 6 3.3230 -3.5576 3.3442 20 1 2.9047 -2.9091 4.0998 21 6 3.9712 -4.7173 3.7129 22 7 4.4809 -5.5066 2.7929 23 14 4.1264 -5.1666 5.5194 24 1 3.4742 -4.1205 6.3475 25 1 3.4651 -6.4737 5.7630 26 1 5.5627 -5.2629 5.8839 27 1 -0.3634 -0.0794 -1.0246 28 1 -0.3633 -0.8478 0.5810 29 1 -0.3634 0.9270 0.4437 30 1 3.2634 1.0728 0.1166 31 1 1.8495 1.8890 0.8261 32 1 0.3641 2.8292 -2.2612 33 1 3.1558 0.4060 -2.2115 34 1 1.5177 0.5772 -2.9220 35 1 3.7606 1.7153 -4.0769 36 1 2.1370 2.4551 -4.2030 37 1 4.6762 4.4201 -3.9769 38 1 5.1891 6.1398 -2.2946 39 1 4.1945 5.9961 -0.0453 40 1 2.6903 4.1326 0.5162 41 1 2.9878 -1.0867 2.2783 42 1 1.4483 -1.9755 2.1881 43 1 2.6527 -3.9791 1.3622 44 1 4.1925 -3.0908 1.4523 45 1 4.9373 -6.3224 3.0523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827850175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:28 Heat of formation + Delta-G solvation = -121.318374 kcal Electronic energy + Delta-G solvation = -28039.832986 eV Core-core repulsion = 24148.122561 eV Total energy + Delta-G solvation = -3891.710425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58415 -38.56937 -38.19785 -37.04311 -36.41990 -35.91299 -35.00959 -33.14725 -32.31765 -30.00965 -29.64448 -27.64116 -26.93137 -24.92267 -23.67114 -23.44216 -21.90979 -21.26822 -19.89720 -19.19358 -18.57397 -17.99525 -17.40412 -17.25077 -16.56591 -16.52869 -16.35569 -16.23199 -15.83747 -15.58546 -15.12854 -14.91760 -14.52388 -14.29042 -14.01668 -13.96103 -13.84914 -13.75527 -13.67490 -13.43480 -13.18348 -13.07468 -12.96398 -12.80613 -12.61768 -12.58598 -12.42724 -12.28143 -12.18107 -12.04567 -11.91371 -11.74346 -11.67456 -11.14942 -10.91866 -10.67093 -9.96022 -9.76546 -9.53477 -8.27504 -6.41888 -0.74470 0.36498 0.47565 1.40285 1.41031 1.54490 1.71560 2.37157 2.79275 2.80980 3.05742 3.14023 3.22822 3.41530 3.46237 3.70493 3.89103 4.03130 4.06999 4.09447 4.15107 4.19477 4.30690 4.42598 4.60106 4.63478 4.68547 4.71984 4.78971 4.79146 4.86786 4.96210 5.06320 5.08531 5.14882 5.18432 5.22725 5.24132 5.25148 5.53262 5.59389 5.62716 5.66752 5.68283 6.04429 6.09117 6.71735 6.78244 7.28465 8.85030 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.002900 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.201138 B = 9652.522757 C =10176.060911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.990 5.990 3 C 0.129 3.871 4 C 0.175 3.825 5 O -0.543 6.543 6 C -0.165 4.165 7 C -0.081 4.081 8 C -0.099 4.099 9 C -0.122 4.122 10 C -0.114 4.114 11 C -0.131 4.131 12 C -0.098 4.098 13 C -0.144 4.144 14 S 2.607 3.393 15 O -0.992 6.992 16 O -0.985 6.985 17 C -0.591 4.591 18 C 0.021 3.979 19 C -0.540 4.540 20 H 0.075 0.925 21 C -0.004 4.004 22 N -0.934 5.934 23 Si 0.975 3.025 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.386 0.614 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.005 0.995 44 H 0.007 0.993 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 24.783 -9.397 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.828 5.828 3 C 0.004 3.996 4 C 0.132 3.868 5 O -0.350 6.350 6 C -0.203 4.203 7 C -0.118 4.118 8 C -0.099 4.099 9 C -0.140 4.140 10 C -0.131 4.131 11 C -0.149 4.149 12 C -0.116 4.116 13 C -0.145 4.145 14 S 2.705 3.295 15 O -0.982 6.982 16 O -0.976 6.976 17 C -0.723 4.723 18 C -0.018 4.018 19 C -0.579 4.579 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.573 5.573 23 Si 0.799 3.201 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.023 0.977 44 H 0.025 0.975 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.571 23.896 -9.640 26.363 hybrid contribution 0.327 -0.465 0.642 0.858 sum -5.243 23.431 -8.998 25.641 Atomic orbital electron populations 1.21536 0.76612 1.03692 1.02436 1.57162 1.16107 1.19645 1.89917 1.21532 0.96933 0.83951 0.97185 1.20681 0.81425 0.89616 0.95088 1.86525 1.23400 1.79204 1.45869 1.23134 1.02178 0.98436 0.96541 1.21083 1.01613 0.92044 0.97086 1.20856 0.97150 0.96378 0.95512 1.20915 0.98222 0.93983 1.00873 1.21445 0.99440 0.98954 0.93296 1.21403 0.97353 0.98495 0.97609 1.20882 0.97810 0.93612 0.99270 1.21068 1.00347 0.97553 0.95542 1.04944 0.73079 0.73157 0.78323 1.93496 1.66904 1.64872 1.72930 1.93483 1.43546 1.83012 1.77519 1.30419 1.10672 1.08021 1.23202 1.18818 0.94165 0.89747 0.99033 1.21545 1.36828 1.07352 0.92147 0.90650 1.26135 0.94710 0.96151 1.03273 1.70107 1.37864 1.13799 1.35577 0.85246 0.78120 0.78481 0.78297 1.17910 1.20286 1.20245 0.92608 0.91662 0.88371 0.88741 0.88001 0.76431 0.91151 0.89720 0.90188 0.88021 0.84600 0.83442 0.83576 0.84974 0.84131 0.84223 0.97664 0.97492 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.32 8.74 127.77 1.12 3.44 16 2 N -0.99 -26.93 2.75 -539.13 -1.48 -28.41 16 3 C 0.13 3.10 4.67 86.38 0.40 3.51 16 4 C 0.17 3.78 1.00 -10.87 -0.01 3.77 16 5 O -0.54 -9.96 11.31 -148.98 -1.68 -11.64 16 6 C -0.16 -3.99 5.85 31.51 0.18 -3.80 16 7 C -0.08 -1.52 6.77 30.52 0.21 -1.32 16 8 C -0.10 -1.94 6.14 -19.56 -0.12 -2.06 16 9 C -0.12 -2.03 10.04 22.30 0.22 -1.81 16 10 C -0.11 -1.65 10.05 22.24 0.22 -1.43 16 11 C -0.13 -1.98 10.05 22.24 0.22 -1.76 16 12 C -0.10 -1.76 9.78 22.27 0.22 -1.54 16 13 C -0.14 -2.95 5.25 -19.59 -0.10 -3.05 16 14 S 2.61 96.85 5.37 -56.49 -0.30 96.55 16 15 O -0.99 -42.71 17.28 -127.65 -2.21 -44.91 16 16 O -0.99 -40.90 14.78 -127.65 -1.89 -42.79 16 17 C -0.59 -23.14 6.12 71.98 0.44 -22.70 16 18 C 0.02 1.13 4.98 29.85 0.15 1.28 16 19 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 20 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 21 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 22 N -0.93 -57.26 13.28 21.45 0.28 -56.97 16 23 Si 0.98 43.53 29.54 68.60 2.03 45.56 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 27 H 0.06 1.29 8.09 -2.39 -0.02 1.27 16 28 H 0.06 1.45 8.02 -2.38 -0.02 1.43 16 29 H 0.10 1.78 7.73 -2.39 -0.02 1.77 16 30 H 0.09 2.49 6.93 -2.38 -0.02 2.47 16 31 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.39 4.83 9.03 -74.06 -0.67 4.16 16 33 H 0.07 2.16 6.06 -2.38 -0.01 2.15 16 34 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.15 1.49 8.06 -2.92 -0.02 1.46 16 40 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 42 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 45 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -76.46 378.87 -1.08 -77.54 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.32 Total: 22.44 kcal Atomic # 6 Polarization: -61.21 SS G_CDS: 3.85 Total: -57.36 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.20 Total: -85.39 kcal Atomic # 8 Polarization: -93.57 SS G_CDS: -5.78 Total: -99.34 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 96.85 SS G_CDS: -0.30 Total: 96.55 kcal Total: -76.46 -1.08 -77.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827850175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.777 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds