Wall clock time and date at job start Tue Mar 31 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47456 * 2 1 4 4 N 1.46496 * 109.47416 * 239.99680 * 2 1 3 5 5 S 1.65602 * 120.00280 * 95.00270 * 4 2 1 6 6 O 1.42097 * 104.27639 * 181.07346 * 5 4 2 7 7 O 1.42101 * 104.27519 * 308.92885 * 5 4 2 8 8 C 1.81400 * 104.44806 * 64.99774 * 5 4 2 9 9 C 1.53005 * 109.46987 * 173.97052 * 8 5 4 10 10 C 1.50698 * 115.54819 * 65.27669 * 9 8 5 11 11 H 1.07996 * 120.00203 * 268.55054 * 10 9 8 12 12 C 1.37878 * 119.99991 * 88.54552 * 10 9 8 13 13 N 1.31516 * 120.00089 * 174.69911 * 12 10 9 14 14 Si 1.86804 * 120.00088 * 354.70205 * 12 10 9 15 15 H 1.48497 * 109.47104 * 92.54732 * 14 12 10 16 16 H 1.48500 * 109.47181 * 212.54967 * 14 12 10 17 17 H 1.48501 * 109.46633 * 332.55131 * 14 12 10 18 18 C 1.53001 * 117.49880 * 279.61029 * 9 8 5 19 19 C 1.52997 * 117.49719 * 210.94832 * 9 8 5 20 20 C 1.53002 * 109.47116 * 119.99413 * 2 1 3 21 21 H 1.09005 * 109.47380 * 300.00618 * 20 2 1 22 22 O 1.42908 * 109.46716 * 59.99861 * 20 2 1 23 23 C 1.50697 * 109.47600 * 180.02562 * 20 2 1 24 24 C 1.38240 * 119.99689 * 279.73118 * 23 20 2 25 25 C 1.38240 * 119.99624 * 179.80887 * 24 23 20 26 26 C 1.38233 * 120.00048 * 0.39554 * 25 24 23 27 27 C 1.38240 * 119.99902 * 359.85702 * 26 25 24 28 28 C 1.38230 * 119.99967 * 100.00013 * 23 20 2 29 29 H 1.09007 * 109.46662 * 60.00311 * 1 2 3 30 30 H 1.08998 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47151 * 300.00710 * 1 2 3 32 32 H 0.97000 * 119.99893 * 274.99750 * 4 2 1 33 33 H 1.08996 * 109.47187 * 293.97128 * 8 5 4 34 34 H 1.09001 * 109.46953 * 53.97648 * 8 5 4 35 35 H 0.96995 * 119.99854 * 180.02562 * 13 12 10 36 36 H 1.09001 * 117.49887 * 359.97438 * 18 9 8 37 37 H 1.08997 * 117.49635 * 145.02164 * 18 9 8 38 38 H 1.09000 * 117.49464 * 214.97769 * 19 9 8 39 39 H 1.09000 * 117.50387 * 359.97433 * 19 9 8 40 40 H 0.96699 * 113.99771 * 60.00472 * 22 20 2 41 41 H 1.07997 * 120.00034 * 359.97438 * 24 23 20 42 42 H 1.07997 * 119.99929 * 180.22983 * 25 24 23 43 43 H 1.07995 * 120.00188 * 179.83402 * 26 25 24 44 44 H 1.08000 * 119.99673 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00567 * 359.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4124 0.1770 -2.5504 6 8 2.8124 -0.8078 -3.4934 7 8 1.2753 0.9965 -2.7847 8 6 3.8314 1.1871 -2.0440 9 6 4.3878 1.9310 -3.2598 10 6 3.4680 2.9561 -3.8714 11 1 2.7992 2.6729 -4.6707 12 6 3.4803 4.2555 -3.4105 13 7 2.7551 5.1733 -4.0117 14 14 4.5269 4.7124 -1.9323 15 1 5.8572 5.1835 -2.3943 16 1 3.8570 5.7943 -1.1668 17 1 4.6985 3.5225 -1.0606 18 6 5.3065 1.1532 -4.2042 19 6 5.8888 2.2264 -3.2810 20 6 2.0400 -0.7211 1.2493 21 1 1.6766 -0.2073 2.1393 22 8 1.5636 -2.0685 1.2494 23 6 3.5470 -0.7206 1.2498 24 6 4.2386 -1.6411 0.4847 25 6 5.6210 -1.6381 0.4820 26 6 6.3117 -0.7200 1.2507 27 6 5.6200 0.1971 2.0198 28 6 4.2376 0.1966 2.0195 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.1111 -1.6562 -1.1947 33 1 3.5138 1.9082 -1.2909 34 1 4.6054 0.5430 -1.6267 35 1 2.7641 6.0875 -3.6877 36 1 5.5148 0.1117 -3.9592 37 1 5.2459 1.3833 -5.2679 38 1 6.2111 3.1622 -3.7379 39 1 6.4800 1.8913 -2.4288 40 1 1.8489 -2.5866 0.4844 41 1 3.6990 -2.3608 -0.1130 42 1 6.1614 -2.3548 -0.1186 43 1 7.3916 -0.7194 1.2507 44 1 6.1596 0.9141 2.6207 45 1 3.6973 0.9132 2.6203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831550080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:24 Heat of formation + Delta-G solvation = -96.488753 kcal Electronic energy + Delta-G solvation = -29418.622918 eV Core-core repulsion = 25527.989186 eV Total energy + Delta-G solvation = -3890.633732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87013 -38.87459 -38.58780 -37.97190 -36.83264 -35.65627 -34.30323 -32.43408 -31.71616 -30.90039 -30.11688 -27.62007 -27.00299 -23.47789 -23.36737 -23.07741 -21.87901 -21.45870 -20.35457 -18.96638 -18.55943 -18.45679 -17.72886 -16.98263 -16.90343 -16.64045 -16.34391 -16.10886 -15.52659 -15.47866 -15.07716 -14.84562 -14.64019 -14.52744 -14.34620 -14.10757 -13.96474 -13.64044 -13.26871 -13.19997 -13.14299 -12.96891 -12.86702 -12.71627 -12.58540 -12.44726 -12.39834 -12.06912 -11.97923 -11.83525 -11.74939 -11.71054 -11.19794 -10.98353 -10.74115 -10.56907 -10.14785 -9.76815 -9.61053 -8.33018 -6.46261 -0.60151 0.43764 0.54008 1.34373 1.35332 1.49140 1.93878 2.34383 2.83901 2.86763 2.99390 3.13647 3.38027 3.46915 3.52124 3.76362 3.86412 3.98443 4.10394 4.16096 4.17719 4.27199 4.31807 4.34466 4.38363 4.42851 4.56474 4.62165 4.67643 4.83256 4.83288 4.94094 5.01123 5.10970 5.15205 5.19159 5.22058 5.41465 5.43057 5.59853 5.61062 5.66649 5.67530 6.05484 6.13867 6.18864 6.65198 6.65971 7.26409 8.83235 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.005767 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.933535 B = 4853.658872 C = 5595.109890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 H 0.089 0.911 4 N -1.105 6.105 5 S 2.622 3.378 6 O -0.992 6.992 7 O -0.989 6.989 8 C -0.564 4.564 9 C -0.027 4.027 10 C -0.514 4.514 11 H 0.028 0.972 12 C 0.028 3.972 13 N -0.940 5.940 14 Si 0.932 3.068 15 H -0.265 1.265 16 H -0.294 1.294 17 H -0.215 1.215 18 C -0.174 4.174 19 C -0.167 4.167 20 C 0.156 3.844 21 H 0.135 0.865 22 O -0.552 6.552 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.129 4.129 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.122 4.122 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.419 0.581 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.268 0.732 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.380 0.620 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 -14.336 17.298 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 H 0.108 0.892 4 N -0.867 5.867 5 S 2.718 3.282 6 O -0.982 6.982 7 O -0.979 6.979 8 C -0.697 4.697 9 C -0.030 4.030 10 C -0.551 4.551 11 H 0.046 0.954 12 C -0.171 4.171 13 N -0.578 5.578 14 Si 0.755 3.245 15 H -0.190 1.190 16 H -0.221 1.221 17 H -0.137 1.137 18 C -0.211 4.211 19 C -0.206 4.206 20 C 0.096 3.904 21 H 0.153 0.847 22 O -0.359 6.359 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.145 4.145 27 C -0.146 4.146 28 C -0.140 4.140 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.256 0.744 33 H 0.146 0.854 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.230 0.770 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.118 -13.855 17.010 22.528 hybrid contribution 0.741 0.592 -0.266 0.985 sum 5.859 -13.264 16.744 22.150 Atomic orbital electron populations 1.22232 0.93959 1.03597 1.02859 1.21636 0.95697 0.96724 0.84832 0.89250 1.55531 1.82160 1.19227 1.29773 1.04417 0.76446 0.74042 0.73267 1.93471 1.85058 1.59221 1.60466 1.93535 1.49219 1.71221 1.83927 1.30090 1.18946 1.13188 1.07432 1.18724 0.90986 0.99101 0.94148 1.20448 1.21412 0.93859 1.19374 0.95363 1.25926 0.96101 0.95720 0.99398 1.70067 1.42510 1.02969 1.42285 0.85984 0.78725 0.79611 0.80207 1.19020 1.22054 1.13668 1.23098 1.04290 0.96849 0.96904 1.23051 0.95258 0.99822 1.02461 1.21100 0.88259 0.83649 0.97426 0.84713 1.86619 1.76592 1.22775 1.49920 1.20569 0.96331 0.97436 0.98309 1.21150 0.94842 0.99112 0.98932 1.21431 0.94361 0.99502 0.99381 1.21474 1.00997 0.95431 0.96580 1.21435 0.94451 0.99166 0.99553 1.21290 0.94891 0.98692 0.99125 0.93551 0.90635 0.89604 0.74406 0.85401 0.83514 0.92259 0.87084 0.90184 0.90283 0.86725 0.77003 0.85041 0.84454 0.84576 0.84585 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 9.37 71.98 0.67 -3.14 16 2 C 0.12 2.59 2.50 44.99 0.11 2.70 16 3 H 0.09 2.06 7.29 -2.39 -0.02 2.05 16 4 N -1.10 -26.94 4.25 -169.39 -0.72 -27.66 16 5 S 2.62 97.72 5.12 -56.49 -0.29 97.43 16 6 O -0.99 -40.37 18.08 -127.65 -2.31 -42.68 16 7 O -0.99 -47.31 16.77 -127.65 -2.14 -49.45 16 8 C -0.56 -20.09 5.38 71.98 0.39 -19.70 16 9 C -0.03 -1.19 0.79 -52.93 -0.04 -1.23 16 10 C -0.51 -29.34 8.77 25.60 0.22 -29.12 16 11 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 12 C 0.03 1.60 5.47 84.65 0.46 2.06 16 13 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 14 Si 0.93 41.69 24.96 68.60 1.71 43.40 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.21 -8.11 5.68 99.48 0.57 -7.54 16 18 C -0.17 -6.79 9.96 30.62 0.30 -6.49 16 19 C -0.17 -6.29 7.67 30.62 0.23 -6.06 16 20 C 0.16 2.61 3.10 29.85 0.09 2.70 16 21 H 0.14 1.84 8.00 -2.38 -0.02 1.82 16 22 O -0.55 -9.10 12.51 -148.98 -1.86 -10.96 16 23 C -0.13 -2.23 4.88 -19.87 -0.10 -2.32 16 24 C -0.12 -2.08 8.37 22.27 0.19 -1.90 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 26 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 27 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 28 C -0.12 -2.11 9.67 22.27 0.22 -1.90 16 29 H 0.05 1.37 7.43 -2.38 -0.02 1.35 16 30 H 0.07 1.54 7.68 -2.39 -0.02 1.52 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.42 7.62 6.14 -96.74 -0.59 7.02 16 33 H 0.13 4.45 6.02 -2.39 -0.01 4.44 16 34 H 0.15 4.01 8.09 -2.39 -0.02 3.99 16 35 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 37 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.08 3.19 7.34 -2.39 -0.02 3.17 16 39 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 40 H 0.38 4.50 6.04 -74.06 -0.45 4.05 16 41 H 0.13 1.73 5.70 -2.91 -0.02 1.72 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.14 1.88 8.04 -2.91 -0.02 1.85 16 Total: -1.00 -80.64 372.50 -2.05 -82.69 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.17 Total: 36.23 kcal Atomic # 6 Polarization: -73.56 SS G_CDS: 3.43 Total: -70.14 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -0.42 Total: -86.53 kcal Atomic # 8 Polarization: -96.78 SS G_CDS: -6.31 Total: -103.09 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.71 Total: 43.40 kcal Atomic # 16 Polarization: 97.72 SS G_CDS: -0.29 Total: 97.43 kcal Total: -80.64 -2.05 -82.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831550080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.794 kcal (2) G-P(sol) polarization free energy of solvation -80.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds