Wall clock time and date at job start Tue Mar 31 2020 22:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47278 * 2 1 4 4 N 1.46496 * 109.46830 * 239.99427 * 2 1 3 5 5 S 1.65595 * 119.99887 * 95.00351 * 4 2 1 6 6 O 1.42095 * 104.28184 * 181.06811 * 5 4 2 7 7 O 1.42097 * 104.27796 * 308.92711 * 5 4 2 8 8 C 1.81404 * 104.45039 * 64.99679 * 5 4 2 9 9 C 1.53001 * 109.47322 * 173.68180 * 8 5 4 10 10 C 1.50708 * 115.54988 * 65.18593 * 9 8 5 11 11 H 1.07998 * 120.00031 * 264.78469 * 10 9 8 12 12 C 1.37877 * 119.99482 * 84.78838 * 10 9 8 13 13 N 1.31513 * 120.00522 * 352.23768 * 12 10 9 14 14 Si 1.86797 * 119.99680 * 172.23954 * 12 10 9 15 15 H 1.48501 * 109.47367 * 90.00087 * 14 12 10 16 16 H 1.48500 * 109.47040 * 210.00041 * 14 12 10 17 17 H 1.48501 * 109.47263 * 329.99900 * 14 12 10 18 18 C 1.53003 * 117.49800 * 279.52501 * 9 8 5 19 19 C 1.52996 * 117.49892 * 210.86262 * 9 8 5 20 20 C 1.52998 * 109.46795 * 119.99683 * 2 1 3 21 21 H 1.09001 * 109.46970 * 174.99671 * 20 2 1 22 22 O 1.42904 * 109.47536 * 55.00372 * 20 2 1 23 23 C 1.50704 * 109.47310 * 294.99730 * 20 2 1 24 24 C 1.38234 * 119.99884 * 84.73129 * 23 20 2 25 25 C 1.38234 * 120.00078 * 179.79180 * 24 23 20 26 26 C 1.38237 * 119.99664 * 0.43505 * 25 24 23 27 27 C 1.38228 * 120.00246 * 359.81601 * 26 25 24 28 28 C 1.38236 * 119.99920 * 265.00123 * 23 20 2 29 29 H 1.08996 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46795 * 300.00142 * 1 2 3 31 31 H 1.08992 * 109.46925 * 60.00221 * 1 2 3 32 32 H 0.97002 * 120.00271 * 275.00158 * 4 2 1 33 33 H 1.09001 * 109.47041 * 293.67929 * 8 5 4 34 34 H 1.08995 * 109.47032 * 53.67960 * 8 5 4 35 35 H 0.96995 * 120.00479 * 185.03009 * 13 12 10 36 36 H 1.09001 * 117.49574 * 359.97438 * 18 9 8 37 37 H 1.08993 * 117.50044 * 145.02305 * 18 9 8 38 38 H 1.09005 * 117.49810 * 214.97728 * 19 9 8 39 39 H 1.08997 * 117.49892 * 359.97061 * 19 9 8 40 40 H 0.96707 * 113.99486 * 299.99387 * 22 20 2 41 41 H 1.08009 * 119.99618 * 359.97438 * 24 23 20 42 42 H 1.07994 * 120.00285 * 180.27941 * 25 24 23 43 43 H 1.08002 * 119.99523 * 179.83842 * 26 25 24 44 44 H 1.07999 * 120.00509 * 179.97438 * 27 26 25 45 45 H 1.07996 * 119.99970 * 359.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 2.4122 0.1769 -2.5504 6 8 2.8123 -0.8078 -3.4935 7 8 1.2752 0.9964 -2.7846 8 6 3.8314 1.1870 -2.0441 9 6 4.3922 1.9253 -3.2612 10 6 3.4747 2.9479 -3.8808 11 1 2.8527 2.6767 -4.7210 12 6 3.4294 4.2297 -3.3748 13 7 4.0676 4.5205 -2.2623 14 14 2.4616 5.5533 -4.2696 15 1 1.0648 5.5713 -3.7657 16 1 3.0920 6.8760 -4.0283 17 1 2.4585 5.2649 -5.7264 18 6 5.3139 1.1431 -4.1990 19 6 5.8933 2.2203 -3.2787 20 6 2.0400 -0.7212 1.2493 21 1 3.1263 -0.7995 1.2056 22 8 1.4703 -2.0304 1.3096 23 6 1.6413 0.0572 2.4766 24 6 0.3907 -0.1271 3.0359 25 6 0.0266 0.5837 4.1642 26 6 0.9099 1.4854 4.7279 27 6 2.1585 1.6735 4.1656 28 6 2.5243 0.9596 3.0398 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.1109 -1.6563 -1.1948 33 1 3.5127 1.9116 -1.2947 34 1 4.6032 0.5435 -1.6221 35 1 3.9768 5.4016 -1.8671 36 1 5.5211 0.1027 -3.9486 37 1 5.2571 1.3684 -5.2639 38 1 6.2174 3.1540 -3.7385 39 1 6.4813 1.8889 -2.4228 40 1 0.5041 -2.0373 1.3505 41 1 -0.3008 -0.8286 2.5930 42 1 -0.9487 0.4365 4.6039 43 1 0.6244 2.0427 5.6079 44 1 2.8484 2.3783 4.6057 45 1 3.4998 1.1064 2.6005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831550081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:29 Heat of formation + Delta-G solvation = -76.765487 kcal Electronic energy + Delta-G solvation = -28346.015832 eV Core-core repulsion = 24456.237365 eV Total energy + Delta-G solvation = -3889.778467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.12024 -37.73928 -36.76644 -36.23935 -35.11210 -34.64930 -32.05832 -31.78784 -31.10369 -29.26848 -28.19397 -26.57524 -25.47032 -22.77431 -22.30136 -21.22370 -20.76434 -19.77482 -18.69382 -17.97024 -17.25213 -16.50788 -16.31892 -15.80787 -15.52473 -15.19781 -15.08638 -14.73920 -14.40932 -14.29534 -14.00079 -13.81544 -13.58730 -13.12427 -13.01627 -12.67957 -12.33106 -12.01215 -11.87109 -11.85986 -11.61766 -11.42144 -11.31105 -11.24936 -11.13682 -11.05838 -11.01204 -10.95143 -10.59004 -10.47589 -10.25503 -10.09216 -9.76976 -9.35240 -9.06789 -8.96868 -8.82085 -8.57706 -8.10779 -6.15826 -4.25999 1.02869 1.17456 1.23462 3.29446 3.35028 3.38096 3.40354 3.60882 4.24916 4.35851 4.40781 4.57962 4.65489 4.69078 4.83945 4.91997 4.94714 5.04662 5.12593 5.18167 5.20213 5.30595 5.36369 5.43165 5.64342 5.74070 5.75865 5.79904 5.87178 5.96114 6.17632 6.25340 6.29143 6.33424 6.35098 6.36356 6.41599 6.59295 6.71468 6.80656 6.96837 7.20861 7.30415 7.37972 7.39395 7.78838 8.19018 8.79460 9.45167 10.91847 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011798 B = 0.004078 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.637612 B = 6864.837471 C = 7833.623834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.126 3.874 3 H 0.096 0.904 4 N -1.124 6.124 5 S 2.606 3.394 6 O -0.974 6.974 7 O -0.948 6.948 8 C -0.556 4.556 9 C 0.043 3.957 10 C -0.515 4.515 11 H 0.068 0.932 12 C 0.083 3.917 13 N -0.875 5.875 14 Si 0.890 3.110 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.269 1.269 18 C -0.208 4.208 19 C -0.141 4.141 20 C 0.142 3.858 21 H 0.116 0.884 22 O -0.550 6.550 23 C -0.113 4.113 24 C -0.110 4.110 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.106 4.106 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.413 0.587 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.373 0.627 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 -8.363 14.232 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.018 3.982 3 H 0.114 0.886 4 N -0.880 5.880 5 S 2.703 3.297 6 O -0.964 6.964 7 O -0.938 6.938 8 C -0.689 4.689 9 C 0.041 3.959 10 C -0.552 4.552 11 H 0.086 0.914 12 C -0.122 4.122 13 N -0.510 5.510 14 Si 0.717 3.283 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.194 1.194 18 C -0.246 4.246 19 C -0.180 4.180 20 C 0.081 3.919 21 H 0.134 0.866 22 O -0.357 6.357 23 C -0.114 4.114 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.134 4.134 28 C -0.124 4.124 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.247 0.753 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.222 0.778 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.708 -8.241 13.465 16.474 hybrid contribution -0.513 0.898 0.345 1.090 sum -5.220 -7.343 13.811 16.489 Atomic orbital electron populations 1.22440 0.95037 1.02333 1.04259 1.21272 0.95342 0.96655 0.84928 0.88590 1.56038 1.82592 1.19455 1.29910 1.05202 0.77269 0.74452 0.72791 1.93506 1.84925 1.59086 1.58914 1.93534 1.47566 1.69841 1.82872 1.30004 1.16797 1.12114 1.10012 1.18270 0.91003 0.96156 0.90461 1.20520 1.23901 0.94021 1.16798 0.91378 1.24936 0.94337 0.98260 0.94680 1.69970 1.41042 1.21930 1.18095 0.86595 0.80288 0.80655 0.80742 1.20054 1.21071 1.19405 1.23201 1.08307 0.95467 0.97581 1.22552 0.97375 0.98362 0.99742 1.21180 0.99029 0.81936 0.89766 0.86593 1.86610 1.25565 1.26920 1.96556 1.20451 0.94967 0.98379 0.97625 1.20887 0.95670 0.99861 0.96358 1.21101 0.99642 0.96870 0.96181 1.21183 0.94166 0.98417 1.00072 1.21176 0.96704 0.99375 0.96148 1.21085 0.99695 0.95753 0.95891 0.92261 0.91222 0.89818 0.75348 0.84998 0.88226 0.92753 0.90664 0.89514 0.89588 0.91537 0.77818 0.86119 0.86029 0.86128 0.85807 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 8.42 37.16 0.31 -1.90 16 2 C 0.13 1.66 2.54 -67.93 -0.17 1.49 16 3 H 0.10 1.36 7.30 -51.93 -0.38 0.98 16 4 N -1.12 -16.56 5.35 -4.89 -0.03 -16.59 16 5 S 2.61 51.96 5.11 -107.50 -0.55 51.41 16 6 O -0.97 -21.47 18.08 -57.54 -1.04 -22.51 16 7 O -0.95 -22.09 16.78 -57.54 -0.97 -23.06 16 8 C -0.56 -11.43 5.76 37.16 0.21 -11.21 16 9 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 10 C -0.52 -13.97 8.19 -34.44 -0.28 -14.26 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 13 N -0.87 -23.68 12.98 55.43 0.72 -22.96 16 14 Si 0.89 21.23 29.55 -169.99 -5.02 16.20 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.21 -4.57 9.96 -26.69 -0.27 -4.83 16 19 C -0.14 -3.19 9.49 -26.69 -0.25 -3.44 16 20 C 0.14 1.57 3.21 -27.88 -0.09 1.48 16 21 H 0.12 1.25 8.05 -51.93 -0.42 0.84 16 22 O -0.55 -5.82 12.75 -35.23 -0.45 -6.27 16 23 C -0.11 -1.21 4.73 -104.62 -0.49 -1.71 16 24 C -0.11 -1.04 7.38 -39.58 -0.29 -1.33 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 27 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 28 C -0.11 -1.15 9.68 -39.58 -0.38 -1.53 16 29 H 0.06 0.58 6.71 -51.93 -0.35 0.23 16 30 H 0.07 0.74 5.91 -51.93 -0.31 0.43 16 31 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 32 H 0.41 5.39 8.54 -34.47 -0.29 5.09 16 33 H 0.13 2.78 7.64 -51.92 -0.40 2.38 16 34 H 0.10 1.72 8.09 -51.93 -0.42 1.30 16 35 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 38 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.37 2.94 5.54 45.56 0.25 3.19 16 41 H 0.12 0.89 6.16 -52.48 -0.32 0.57 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -33.29 380.43 -10.75 -44.04 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.95 Total: 12.77 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: -3.20 Total: -38.78 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.69 Total: -39.55 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -2.45 Total: -51.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.55 Total: 51.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.29 -10.75 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831550081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.721 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds