Wall clock time and date at job start Tue Mar 31 2020 22:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47278 * 2 1 4 4 N 1.46496 * 109.46830 * 239.99427 * 2 1 3 5 5 S 1.65595 * 119.99887 * 95.00351 * 4 2 1 6 6 O 1.42095 * 104.28184 * 181.06811 * 5 4 2 7 7 O 1.42097 * 104.27796 * 308.92711 * 5 4 2 8 8 C 1.81404 * 104.45039 * 64.99679 * 5 4 2 9 9 C 1.53001 * 109.47322 * 173.68180 * 8 5 4 10 10 C 1.50708 * 115.54988 * 65.18593 * 9 8 5 11 11 H 1.07998 * 120.00031 * 264.78469 * 10 9 8 12 12 C 1.37877 * 119.99482 * 84.78838 * 10 9 8 13 13 N 1.31513 * 120.00522 * 352.23768 * 12 10 9 14 14 Si 1.86797 * 119.99680 * 172.23954 * 12 10 9 15 15 H 1.48501 * 109.47367 * 90.00087 * 14 12 10 16 16 H 1.48500 * 109.47040 * 210.00041 * 14 12 10 17 17 H 1.48501 * 109.47263 * 329.99900 * 14 12 10 18 18 C 1.53003 * 117.49800 * 279.52501 * 9 8 5 19 19 C 1.52996 * 117.49892 * 210.86262 * 9 8 5 20 20 C 1.52998 * 109.46795 * 119.99683 * 2 1 3 21 21 H 1.09001 * 109.46970 * 174.99671 * 20 2 1 22 22 O 1.42904 * 109.47536 * 55.00372 * 20 2 1 23 23 C 1.50704 * 109.47310 * 294.99730 * 20 2 1 24 24 C 1.38234 * 119.99884 * 84.73129 * 23 20 2 25 25 C 1.38234 * 120.00078 * 179.79180 * 24 23 20 26 26 C 1.38237 * 119.99664 * 0.43505 * 25 24 23 27 27 C 1.38228 * 120.00246 * 359.81601 * 26 25 24 28 28 C 1.38236 * 119.99920 * 265.00123 * 23 20 2 29 29 H 1.08996 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46795 * 300.00142 * 1 2 3 31 31 H 1.08992 * 109.46925 * 60.00221 * 1 2 3 32 32 H 0.97002 * 120.00271 * 275.00158 * 4 2 1 33 33 H 1.09001 * 109.47041 * 293.67929 * 8 5 4 34 34 H 1.08995 * 109.47032 * 53.67960 * 8 5 4 35 35 H 0.96995 * 120.00479 * 185.03009 * 13 12 10 36 36 H 1.09001 * 117.49574 * 359.97438 * 18 9 8 37 37 H 1.08993 * 117.50044 * 145.02305 * 18 9 8 38 38 H 1.09005 * 117.49810 * 214.97728 * 19 9 8 39 39 H 1.08997 * 117.49892 * 359.97061 * 19 9 8 40 40 H 0.96707 * 113.99486 * 299.99387 * 22 20 2 41 41 H 1.08009 * 119.99618 * 359.97438 * 24 23 20 42 42 H 1.07994 * 120.00285 * 180.27941 * 25 24 23 43 43 H 1.08002 * 119.99523 * 179.83842 * 26 25 24 44 44 H 1.07999 * 120.00509 * 179.97438 * 27 26 25 45 45 H 1.07996 * 119.99970 * 359.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 2.4122 0.1769 -2.5504 6 8 2.8123 -0.8078 -3.4935 7 8 1.2752 0.9964 -2.7846 8 6 3.8314 1.1870 -2.0441 9 6 4.3922 1.9253 -3.2612 10 6 3.4747 2.9479 -3.8808 11 1 2.8527 2.6767 -4.7210 12 6 3.4294 4.2297 -3.3748 13 7 4.0676 4.5205 -2.2623 14 14 2.4616 5.5533 -4.2696 15 1 1.0648 5.5713 -3.7657 16 1 3.0920 6.8760 -4.0283 17 1 2.4585 5.2649 -5.7264 18 6 5.3139 1.1431 -4.1990 19 6 5.8933 2.2203 -3.2787 20 6 2.0400 -0.7212 1.2493 21 1 3.1263 -0.7995 1.2056 22 8 1.4703 -2.0304 1.3096 23 6 1.6413 0.0572 2.4766 24 6 0.3907 -0.1271 3.0359 25 6 0.0266 0.5837 4.1642 26 6 0.9099 1.4854 4.7279 27 6 2.1585 1.6735 4.1656 28 6 2.5243 0.9596 3.0398 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.1109 -1.6563 -1.1948 33 1 3.5127 1.9116 -1.2947 34 1 4.6032 0.5435 -1.6221 35 1 3.9768 5.4016 -1.8671 36 1 5.5211 0.1027 -3.9486 37 1 5.2571 1.3684 -5.2639 38 1 6.2174 3.1540 -3.7385 39 1 6.4813 1.8889 -2.4228 40 1 0.5041 -2.0373 1.3505 41 1 -0.3008 -0.8286 2.5930 42 1 -0.9487 0.4365 4.6039 43 1 0.6244 2.0427 5.6079 44 1 2.8484 2.3783 4.6057 45 1 3.4998 1.1064 2.6005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831550081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:28 Heat of formation + Delta-G solvation = -100.317831 kcal Electronic energy + Delta-G solvation = -28347.037138 eV Core-core repulsion = 24456.237365 eV Total energy + Delta-G solvation = -3890.799773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91758 -38.61274 -38.55520 -37.91168 -36.78907 -35.73430 -34.08924 -32.60302 -31.81581 -30.30995 -29.86598 -27.49371 -27.42901 -23.52873 -23.15798 -22.99398 -21.70343 -21.50448 -20.25935 -18.82243 -18.64607 -18.30211 -17.45395 -16.83013 -16.74521 -16.57447 -16.49712 -16.11852 -15.89689 -15.53343 -15.16597 -14.93383 -14.77683 -14.30757 -13.94821 -13.76780 -13.74027 -13.54169 -13.31098 -13.13789 -12.94638 -12.89747 -12.87527 -12.76265 -12.55951 -12.52686 -12.43383 -12.22844 -12.08180 -11.92300 -11.82015 -11.60098 -11.13754 -10.87832 -10.59024 -10.53205 -9.89056 -9.78358 -9.60588 -8.19955 -6.34188 -0.52173 0.40602 0.52123 1.37586 1.40118 1.48545 1.99999 2.38959 2.84097 2.93987 3.07354 3.37123 3.44485 3.46771 3.64912 3.68580 3.90886 3.98758 4.10279 4.15186 4.19473 4.28033 4.32565 4.45109 4.53394 4.56157 4.59524 4.64868 4.81269 4.82902 4.87142 4.97359 5.06436 5.16043 5.17000 5.20535 5.33240 5.45716 5.57584 5.58340 5.64946 5.65122 5.71130 6.11319 6.17813 6.22320 6.68938 6.71489 7.37947 8.87011 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011798 B = 0.004078 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.637612 B = 6864.837471 C = 7833.623834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.119 3.881 3 H 0.082 0.918 4 N -1.105 6.105 5 S 2.623 3.377 6 O -0.997 6.997 7 O -0.988 6.988 8 C -0.554 4.554 9 C 0.011 3.989 10 C -0.534 4.534 11 H 0.047 0.953 12 C 0.045 3.955 13 N -0.890 5.890 14 Si 0.932 3.068 15 H -0.277 1.277 16 H -0.273 1.273 17 H -0.270 1.270 18 C -0.198 4.198 19 C -0.137 4.137 20 C 0.154 3.846 21 H 0.117 0.883 22 O -0.554 6.554 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.126 4.126 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.424 0.576 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.385 0.615 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -9.334 15.926 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.012 3.988 3 H 0.100 0.900 4 N -0.866 5.866 5 S 2.720 3.280 6 O -0.987 6.987 7 O -0.978 6.978 8 C -0.687 4.687 9 C 0.009 3.991 10 C -0.572 4.572 11 H 0.066 0.934 12 C -0.158 4.158 13 N -0.526 5.526 14 Si 0.758 3.242 15 H -0.203 1.203 16 H -0.198 1.198 17 H -0.194 1.194 18 C -0.235 4.235 19 C -0.176 4.176 20 C 0.093 3.907 21 H 0.135 0.865 22 O -0.362 6.362 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.148 4.148 28 C -0.145 4.145 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.261 0.739 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.236 0.764 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.162 -9.219 15.151 18.472 hybrid contribution -0.400 1.168 -0.121 1.241 sum -5.562 -8.051 15.030 17.935 Atomic orbital electron populations 1.22437 0.94186 1.03868 1.03557 1.21487 0.96138 0.96190 0.85029 0.90020 1.55503 1.82152 1.19682 1.29217 1.04403 0.76506 0.73887 0.73229 1.93463 1.85117 1.59444 1.60702 1.93486 1.49141 1.71119 1.84040 1.29894 1.18021 1.12352 1.08407 1.18404 0.91328 0.97024 0.92338 1.20683 1.24436 0.95422 1.16623 0.93433 1.25474 0.95298 0.99647 0.95346 1.70008 1.41697 1.22338 1.18598 0.85940 0.79191 0.79288 0.79802 1.20279 1.19791 1.19442 1.23250 1.06712 0.96449 0.97135 1.22514 0.96694 0.97893 1.00545 1.20970 0.99063 0.81907 0.88713 0.86497 1.86598 1.26806 1.26396 1.96446 1.20462 0.95757 0.98803 0.97741 1.21188 0.95488 1.00177 0.96549 1.21455 1.00615 0.96298 0.95920 1.21520 0.93827 0.98436 1.00608 1.21419 0.97557 0.99671 0.96130 1.21268 1.00104 0.96434 0.96647 0.89666 0.89544 0.92865 0.73922 0.85846 0.84826 0.92531 0.88351 0.89988 0.91523 0.89305 0.76398 0.84040 0.83682 0.84119 0.84726 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.19 8.42 71.98 0.61 -3.58 16 2 C 0.12 3.02 2.54 44.99 0.11 3.13 16 3 H 0.08 2.32 7.30 -2.39 -0.02 2.30 16 4 N -1.11 -31.39 5.35 -169.39 -0.91 -32.30 16 5 S 2.62 104.23 5.11 -56.49 -0.29 103.94 16 6 O -1.00 -43.43 18.08 -127.65 -2.31 -45.74 16 7 O -0.99 -47.05 16.78 -127.65 -2.14 -49.19 16 8 C -0.55 -22.45 5.76 71.98 0.41 -22.04 16 9 C 0.01 0.54 1.32 -52.93 -0.07 0.47 16 10 C -0.53 -29.50 8.19 25.60 0.21 -29.29 16 11 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 12 C 0.05 2.47 5.38 84.65 0.46 2.93 16 13 N -0.89 -48.42 12.98 21.45 0.28 -48.14 16 14 Si 0.93 43.81 29.55 68.60 2.03 45.84 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 C -0.20 -8.53 9.96 30.62 0.30 -8.22 16 19 C -0.14 -6.11 9.49 30.62 0.29 -5.82 16 20 C 0.15 3.16 3.21 29.85 0.10 3.25 16 21 H 0.12 2.35 8.05 -2.39 -0.02 2.33 16 22 O -0.55 -10.29 12.75 -148.98 -1.90 -12.19 16 23 C -0.13 -2.52 4.73 -19.86 -0.09 -2.61 16 24 C -0.12 -1.92 7.38 22.27 0.16 -1.76 16 25 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 26 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 27 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 28 C -0.13 -2.63 9.68 22.27 0.22 -2.42 16 29 H 0.08 1.47 6.71 -2.39 -0.02 1.45 16 30 H 0.09 1.68 5.91 -2.39 -0.01 1.67 16 31 H 0.05 1.57 7.42 -2.39 -0.02 1.56 16 32 H 0.42 10.31 8.54 -96.75 -0.83 9.48 16 33 H 0.12 5.22 7.64 -2.39 -0.02 5.20 16 34 H 0.13 4.36 8.09 -2.39 -0.02 4.34 16 35 H 0.27 13.72 8.32 -92.71 -0.77 12.95 16 36 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 37 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.07 3.18 8.14 -2.38 -0.02 3.17 16 39 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.38 4.85 5.54 -74.05 -0.41 4.44 16 41 H 0.14 1.62 6.16 -2.91 -0.02 1.61 16 42 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -71.52 380.43 -2.08 -73.60 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.22 Total: 35.85 kcal Atomic # 6 Polarization: -75.04 SS G_CDS: 3.38 Total: -71.66 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -0.63 Total: -80.44 kcal Atomic # 8 Polarization: -100.77 SS G_CDS: -6.35 Total: -107.12 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 104.23 SS G_CDS: -0.29 Total: 103.94 kcal Total: -71.52 -2.08 -73.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831550081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.720 kcal (2) G-P(sol) polarization free energy of solvation -71.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds