Wall clock time and date at job start Tue Mar 31 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47485 * 2 1 4 4 N 1.46500 * 109.46984 * 120.00380 * 2 1 3 5 5 S 1.65600 * 119.99991 * 264.99794 * 4 2 1 6 6 O 1.42097 * 104.27312 * 308.92918 * 5 4 2 7 7 O 1.42101 * 104.27829 * 181.07310 * 5 4 2 8 8 C 1.81400 * 104.45011 * 64.99934 * 5 4 2 9 9 C 1.52997 * 109.46973 * 174.34581 * 8 5 4 10 10 C 1.50699 * 115.55146 * 295.22049 * 9 8 5 11 11 H 1.08006 * 119.99664 * 95.16929 * 10 9 8 12 12 C 1.37880 * 120.00083 * 274.88923 * 10 9 8 13 13 N 1.31510 * 120.00053 * 6.45717 * 12 10 9 14 14 Si 1.86797 * 119.99885 * 186.45298 * 12 10 9 15 15 H 1.48504 * 109.47184 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47250 * 120.00076 * 14 12 10 17 17 H 1.48493 * 109.47159 * 240.00300 * 14 12 10 18 18 C 1.52999 * 117.49675 * 80.89766 * 9 8 5 19 19 C 1.53006 * 117.49729 * 149.55238 * 9 8 5 20 20 C 1.53003 * 109.46775 * 240.00210 * 2 1 3 21 21 H 1.09004 * 109.46549 * 185.00423 * 20 2 1 22 22 O 1.42897 * 109.47084 * 304.99889 * 20 2 1 23 23 C 1.50701 * 109.47347 * 65.00165 * 20 2 1 24 24 C 1.38232 * 120.00147 * 279.72684 * 23 20 2 25 25 C 1.38228 * 120.00055 * 179.81105 * 24 23 20 26 26 C 1.38235 * 119.99828 * 0.38919 * 25 24 23 27 27 C 1.38227 * 120.00188 * 359.86419 * 26 25 24 28 28 C 1.38228 * 120.00137 * 359.95157 * 27 26 25 29 29 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47037 * 299.99766 * 1 2 3 31 31 H 1.08998 * 109.47132 * 59.99633 * 1 2 3 32 32 H 0.97006 * 119.99755 * 84.99796 * 4 2 1 33 33 H 1.09004 * 109.47085 * 54.34573 * 8 5 4 34 34 H 1.08998 * 109.46945 * 294.35149 * 8 5 4 35 35 H 0.96994 * 119.99878 * 185.02501 * 13 12 10 36 36 H 1.09004 * 117.49807 * 215.00208 * 18 9 8 37 37 H 1.09000 * 117.50005 * 0.02562 * 18 9 8 38 38 H 1.09004 * 117.49857 * 359.97438 * 19 9 8 39 39 H 1.08995 * 117.49830 * 144.97148 * 19 9 8 40 40 H 0.96703 * 114.00255 * 60.00587 * 22 20 2 41 41 H 1.08003 * 119.99711 * 359.97438 * 24 23 20 42 42 H 1.08003 * 120.00317 * 180.23339 * 25 24 23 43 43 H 1.08005 * 119.99660 * 179.83684 * 26 25 24 44 44 H 1.08006 * 120.00375 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.00824 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1770 2.5505 6 8 3.2875 1.1904 2.0750 7 8 2.8606 -0.8031 3.4765 8 6 0.8408 0.8988 3.0985 9 6 1.0475 1.6167 4.4337 10 6 1.4273 0.7338 5.5945 11 1 2.4669 0.6045 5.8570 12 6 0.4472 0.0958 6.3248 13 7 -0.8071 0.1540 5.9339 14 14 0.9011 -0.8514 7.8695 15 1 2.3668 -0.7636 8.0913 16 1 0.1889 -0.2684 9.0349 17 1 0.5084 -2.2747 7.7108 18 6 1.6426 3.0257 4.3934 19 6 0.1620 2.8291 4.7284 20 6 2.0400 -0.7212 -1.2493 21 1 3.1263 -0.7995 -1.2056 22 8 1.4701 -2.0303 -1.3095 23 6 1.6413 0.0571 -2.4766 24 6 0.3598 -0.0579 -2.9820 25 6 -0.0070 0.6591 -4.1055 26 6 0.9101 1.4848 -4.7283 27 6 2.1931 1.5958 -4.2261 28 6 2.5588 0.8818 -3.1004 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.1109 -1.6563 1.1948 33 1 0.1011 0.1077 3.2220 34 1 0.4890 1.6119 2.3531 35 1 -1.5054 -0.2322 6.4853 36 1 2.3088 3.3141 5.2065 37 1 1.8863 3.4413 3.4157 38 1 -0.5676 3.1155 3.9709 39 1 -0.1463 2.9879 5.7617 40 1 0.5040 -2.0373 -1.3505 41 1 -0.3556 -0.7058 -2.4975 42 1 -1.0094 0.5722 -4.4981 43 1 0.6242 2.0429 -5.6077 44 1 2.9098 2.2406 -4.7129 45 1 3.5611 0.9687 -2.7076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831550083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:36 Heat of formation + Delta-G solvation = -75.592121 kcal Electronic energy + Delta-G solvation = -28144.676418 eV Core-core repulsion = 24254.948832 eV Total energy + Delta-G solvation = -3889.727586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.19855 -37.80053 -36.77567 -36.25022 -35.10619 -34.72916 -32.02672 -31.85036 -31.22536 -29.35635 -28.20343 -26.63856 -25.43053 -22.84529 -22.36307 -21.24863 -20.82401 -19.75949 -18.74444 -17.97986 -17.25006 -16.59586 -16.36688 -15.87646 -15.60558 -15.27108 -15.03878 -14.69971 -14.46043 -14.29575 -14.07244 -13.83568 -13.70367 -13.27338 -13.02075 -12.72855 -12.41877 -11.97510 -11.91551 -11.81737 -11.74008 -11.44050 -11.35872 -11.31829 -11.17762 -11.11632 -11.01315 -10.92075 -10.55294 -10.47756 -10.23745 -10.10897 -9.77059 -9.36946 -9.15562 -8.96297 -8.89861 -8.54643 -8.11616 -6.13625 -4.22253 0.98702 1.13397 1.14355 3.29504 3.33849 3.38164 3.45993 3.52623 4.24617 4.37123 4.39713 4.53740 4.57448 4.61853 4.75981 4.83100 4.90601 5.00507 5.10983 5.14387 5.17515 5.22060 5.26857 5.41782 5.58329 5.60395 5.68697 5.73342 5.79194 5.89628 6.10698 6.13986 6.21235 6.24843 6.25539 6.33196 6.35480 6.58964 6.67857 6.71912 6.96232 7.21372 7.30509 7.36951 7.38949 7.82910 8.20314 8.84601 9.48644 10.94885 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.003163 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.192512 B = 8851.159349 C = 9051.123863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.121 3.879 3 H 0.099 0.901 4 N -1.122 6.122 5 S 2.603 3.397 6 O -0.980 6.980 7 O -0.943 6.943 8 C -0.554 4.554 9 C 0.042 3.958 10 C -0.505 4.505 11 H 0.071 0.929 12 C 0.079 3.921 13 N -0.876 5.876 14 Si 0.891 3.109 15 H -0.268 1.268 16 H -0.284 1.284 17 H -0.281 1.281 18 C -0.214 4.214 19 C -0.138 4.138 20 C 0.145 3.855 21 H 0.116 0.884 22 O -0.549 6.549 23 C -0.113 4.113 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.106 4.106 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.416 0.584 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.373 0.627 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 0.955 -20.087 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.012 3.988 3 H 0.117 0.883 4 N -0.878 5.878 5 S 2.701 3.299 6 O -0.970 6.970 7 O -0.933 6.933 8 C -0.687 4.687 9 C 0.040 3.960 10 C -0.542 4.542 11 H 0.089 0.911 12 C -0.126 4.126 13 N -0.512 5.512 14 Si 0.719 3.281 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.207 1.207 18 C -0.252 4.252 19 C -0.177 4.177 20 C 0.084 3.916 21 H 0.134 0.866 22 O -0.355 6.355 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.125 4.125 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.154 0.846 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.222 0.778 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.671 0.895 -19.694 19.725 hybrid contribution -1.347 -0.532 0.646 1.586 sum -0.676 0.363 -19.048 19.063 Atomic orbital electron populations 1.22656 0.95417 1.03222 1.04010 1.21298 0.94475 0.97346 0.85648 0.88293 1.55992 1.84253 1.20053 1.27510 1.05226 0.77805 0.74598 0.72309 1.93493 1.62581 1.60851 1.80049 1.93572 1.79844 1.58682 1.61214 1.30073 1.20191 1.11605 1.06813 1.18325 1.01002 0.86132 0.90565 1.20597 0.93862 1.27163 1.12620 0.91123 1.24934 0.94927 0.95039 0.97666 1.70016 0.99673 1.44824 1.36736 0.86528 0.79233 0.79782 0.82601 1.19208 1.20976 1.20725 1.23251 0.97672 1.03048 1.01194 1.22526 0.90727 1.03662 1.00833 1.21102 0.99137 0.81904 0.89410 0.86586 1.86631 1.25557 1.26811 1.96522 1.20484 0.94592 0.98682 0.97634 1.20957 0.95590 0.99717 0.96591 1.21124 0.99641 0.97076 0.95898 1.21188 0.93772 0.98880 0.99995 1.21165 0.96567 0.99430 0.96460 1.21085 0.99549 0.96259 0.95570 0.91470 0.90599 0.90735 0.74991 0.84637 0.88443 0.92921 0.89450 0.90703 0.91565 0.89516 0.77806 0.85892 0.85936 0.86099 0.85869 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 8.23 37.16 0.31 -1.74 16 2 C 0.12 1.49 2.67 -67.93 -0.18 1.31 16 3 H 0.10 1.27 7.48 -51.93 -0.39 0.89 16 4 N -1.12 -16.76 5.35 -4.89 -0.03 -16.79 16 5 S 2.60 52.02 5.33 -107.50 -0.57 51.45 16 6 O -0.98 -21.02 17.39 -57.54 -1.00 -22.03 16 7 O -0.94 -22.63 17.10 -57.54 -0.98 -23.62 16 8 C -0.55 -11.33 4.88 37.16 0.18 -11.15 16 9 C 0.04 1.01 1.34 -155.66 -0.21 0.80 16 10 C -0.51 -13.76 7.66 -34.44 -0.26 -14.02 16 11 H 0.07 1.99 7.82 -52.48 -0.41 1.58 16 12 C 0.08 2.13 5.39 -17.82 -0.10 2.04 16 13 N -0.88 -23.88 12.93 55.43 0.72 -23.16 16 14 Si 0.89 21.46 29.55 -169.99 -5.02 16.44 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 C -0.21 -4.65 9.96 -26.70 -0.27 -4.91 16 19 C -0.14 -3.10 9.44 -26.69 -0.25 -3.36 16 20 C 0.15 1.58 3.23 -27.88 -0.09 1.49 16 21 H 0.12 1.30 8.00 -51.93 -0.42 0.89 16 22 O -0.55 -5.85 12.79 -35.23 -0.45 -6.30 16 23 C -0.11 -1.12 4.81 -104.62 -0.50 -1.62 16 24 C -0.11 -0.96 7.30 -39.59 -0.29 -1.24 16 25 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 26 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 27 C -0.12 -1.01 10.05 -39.59 -0.40 -1.40 16 28 C -0.11 -1.02 9.67 -39.58 -0.38 -1.41 16 29 H 0.07 0.60 6.71 -51.93 -0.35 0.26 16 30 H 0.08 0.89 5.97 -51.93 -0.31 0.58 16 31 H 0.07 0.66 5.59 -51.93 -0.29 0.37 16 32 H 0.42 5.79 8.54 -34.47 -0.29 5.49 16 33 H 0.14 2.87 8.14 -51.92 -0.42 2.44 16 34 H 0.10 1.68 7.11 -51.93 -0.37 1.31 16 35 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 36 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 40 H 0.37 2.91 5.65 45.56 0.26 3.16 16 41 H 0.12 0.83 5.89 -52.48 -0.31 0.52 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.13 1.09 8.04 -52.49 -0.42 0.67 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -33.57 376.48 -10.72 -44.30 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.82 Total: 11.97 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: -3.24 Total: -37.93 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.69 Total: -39.95 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -2.44 Total: -51.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 52.02 SS G_CDS: -0.57 Total: 51.45 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.57 -10.72 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831550083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.295 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds