Wall clock time and date at job start Tue Mar 31 2020 22:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47485 * 2 1 4 4 N 1.46500 * 109.46984 * 120.00380 * 2 1 3 5 5 S 1.65600 * 119.99991 * 264.99794 * 4 2 1 6 6 O 1.42097 * 104.27312 * 308.92918 * 5 4 2 7 7 O 1.42101 * 104.27829 * 181.07310 * 5 4 2 8 8 C 1.81400 * 104.45011 * 64.99934 * 5 4 2 9 9 C 1.52997 * 109.46973 * 174.34581 * 8 5 4 10 10 C 1.50699 * 115.55146 * 295.22049 * 9 8 5 11 11 H 1.08006 * 119.99664 * 95.16929 * 10 9 8 12 12 C 1.37880 * 120.00083 * 274.88923 * 10 9 8 13 13 N 1.31510 * 120.00053 * 6.45717 * 12 10 9 14 14 Si 1.86797 * 119.99885 * 186.45298 * 12 10 9 15 15 H 1.48504 * 109.47184 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47250 * 120.00076 * 14 12 10 17 17 H 1.48493 * 109.47159 * 240.00300 * 14 12 10 18 18 C 1.52999 * 117.49675 * 80.89766 * 9 8 5 19 19 C 1.53006 * 117.49729 * 149.55238 * 9 8 5 20 20 C 1.53003 * 109.46775 * 240.00210 * 2 1 3 21 21 H 1.09004 * 109.46549 * 185.00423 * 20 2 1 22 22 O 1.42897 * 109.47084 * 304.99889 * 20 2 1 23 23 C 1.50701 * 109.47347 * 65.00165 * 20 2 1 24 24 C 1.38232 * 120.00147 * 279.72684 * 23 20 2 25 25 C 1.38228 * 120.00055 * 179.81105 * 24 23 20 26 26 C 1.38235 * 119.99828 * 0.38919 * 25 24 23 27 27 C 1.38227 * 120.00188 * 359.86419 * 26 25 24 28 28 C 1.38228 * 120.00137 * 359.95157 * 27 26 25 29 29 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47037 * 299.99766 * 1 2 3 31 31 H 1.08998 * 109.47132 * 59.99633 * 1 2 3 32 32 H 0.97006 * 119.99755 * 84.99796 * 4 2 1 33 33 H 1.09004 * 109.47085 * 54.34573 * 8 5 4 34 34 H 1.08998 * 109.46945 * 294.35149 * 8 5 4 35 35 H 0.96994 * 119.99878 * 185.02501 * 13 12 10 36 36 H 1.09004 * 117.49807 * 215.00208 * 18 9 8 37 37 H 1.09000 * 117.50005 * 0.02562 * 18 9 8 38 38 H 1.09004 * 117.49857 * 359.97438 * 19 9 8 39 39 H 1.08995 * 117.49830 * 144.97148 * 19 9 8 40 40 H 0.96703 * 114.00255 * 60.00587 * 22 20 2 41 41 H 1.08003 * 119.99711 * 359.97438 * 24 23 20 42 42 H 1.08003 * 120.00317 * 180.23339 * 25 24 23 43 43 H 1.08005 * 119.99660 * 179.83684 * 26 25 24 44 44 H 1.08006 * 120.00375 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.00824 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1770 2.5505 6 8 3.2875 1.1904 2.0750 7 8 2.8606 -0.8031 3.4765 8 6 0.8408 0.8988 3.0985 9 6 1.0475 1.6167 4.4337 10 6 1.4273 0.7338 5.5945 11 1 2.4669 0.6045 5.8570 12 6 0.4472 0.0958 6.3248 13 7 -0.8071 0.1540 5.9339 14 14 0.9011 -0.8514 7.8695 15 1 2.3668 -0.7636 8.0913 16 1 0.1889 -0.2684 9.0349 17 1 0.5084 -2.2747 7.7108 18 6 1.6426 3.0257 4.3934 19 6 0.1620 2.8291 4.7284 20 6 2.0400 -0.7212 -1.2493 21 1 3.1263 -0.7995 -1.2056 22 8 1.4701 -2.0303 -1.3095 23 6 1.6413 0.0571 -2.4766 24 6 0.3598 -0.0579 -2.9820 25 6 -0.0070 0.6591 -4.1055 26 6 0.9101 1.4848 -4.7283 27 6 2.1931 1.5958 -4.2261 28 6 2.5588 0.8818 -3.1004 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.1109 -1.6563 1.1948 33 1 0.1011 0.1077 3.2220 34 1 0.4890 1.6119 2.3531 35 1 -1.5054 -0.2322 6.4853 36 1 2.3088 3.3141 5.2065 37 1 1.8863 3.4413 3.4157 38 1 -0.5676 3.1155 3.9709 39 1 -0.1463 2.9879 5.7617 40 1 0.5040 -2.0373 -1.3505 41 1 -0.3556 -0.7058 -2.4975 42 1 -1.0094 0.5722 -4.4981 43 1 0.6242 2.0429 -5.6077 44 1 2.9098 2.2406 -4.7129 45 1 3.5611 0.9687 -2.7076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831550083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:35 Heat of formation + Delta-G solvation = -99.501644 kcal Electronic energy + Delta-G solvation = -28145.713212 eV Core-core repulsion = 24254.948832 eV Total energy + Delta-G solvation = -3890.764381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93199 -38.60784 -38.56579 -37.92568 -36.81107 -35.76939 -34.06254 -32.60538 -31.85277 -30.37598 -29.78185 -27.59885 -27.30020 -23.50806 -23.15300 -22.98428 -21.67753 -21.50242 -20.28523 -18.80521 -18.64754 -18.33817 -17.48102 -16.91190 -16.66098 -16.53915 -16.50659 -16.13364 -15.82655 -15.60086 -15.16740 -14.95923 -14.80611 -14.31811 -13.90763 -13.77863 -13.69602 -13.54707 -13.19717 -13.15206 -13.00842 -12.91931 -12.86155 -12.80545 -12.59077 -12.51115 -12.41609 -12.22616 -12.07969 -11.90433 -11.80536 -11.55962 -11.12324 -10.85699 -10.58937 -10.49566 -9.90583 -9.77989 -9.60788 -8.18656 -6.30816 -0.51676 0.40621 0.52171 1.36670 1.41221 1.52259 1.97205 2.41539 2.85067 2.95308 3.09409 3.33977 3.41291 3.48917 3.63392 3.70451 3.89767 4.02283 4.11420 4.16091 4.21124 4.24538 4.32916 4.46973 4.48217 4.55820 4.61695 4.65949 4.79116 4.84748 4.87130 4.95711 5.06518 5.15819 5.17340 5.20778 5.30331 5.47509 5.58081 5.58574 5.65232 5.66058 5.74529 6.10889 6.14658 6.23813 6.69903 6.75201 7.40780 8.89211 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.003163 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.192512 B = 8851.159349 C = 9051.123863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.114 3.886 3 H 0.093 0.907 4 N -1.109 6.109 5 S 2.619 3.381 6 O -0.997 6.997 7 O -0.991 6.991 8 C -0.547 4.547 9 C 0.009 3.991 10 C -0.523 4.523 11 H 0.047 0.953 12 C 0.041 3.959 13 N -0.891 5.891 14 Si 0.933 3.067 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.278 1.278 18 C -0.204 4.204 19 C -0.134 4.134 20 C 0.154 3.846 21 H 0.106 0.894 22 O -0.558 6.558 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.127 4.127 28 C -0.126 4.126 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.422 0.578 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.264 0.736 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.386 0.614 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 1.304 -22.124 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.006 3.994 3 H 0.111 0.889 4 N -0.868 5.868 5 S 2.717 3.283 6 O -0.987 6.987 7 O -0.981 6.981 8 C -0.680 4.680 9 C 0.007 3.993 10 C -0.560 4.560 11 H 0.065 0.935 12 C -0.161 4.161 13 N -0.528 5.528 14 Si 0.759 3.241 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.204 1.204 18 C -0.241 4.241 19 C -0.173 4.173 20 C 0.093 3.907 21 H 0.124 0.876 22 O -0.366 6.366 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.145 4.145 28 C -0.144 4.144 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.258 0.742 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.237 0.763 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.676 1.249 -21.726 21.773 hybrid contribution -0.922 -0.621 1.169 1.613 sum -1.598 0.627 -20.558 20.629 Atomic orbital electron populations 1.22673 0.93666 1.04509 1.04442 1.21581 0.95921 0.96960 0.84915 0.88866 1.55532 1.84244 1.20121 1.26949 1.04460 0.77502 0.73976 0.72399 1.93463 1.63336 1.61583 1.80354 1.93505 1.80918 1.60039 1.63623 1.29934 1.20131 1.11951 1.06008 1.18450 1.02883 0.86765 0.91231 1.20725 0.92850 1.28134 1.14322 0.93479 1.25459 0.95126 0.95823 0.99713 1.70046 0.99918 1.45450 1.37384 0.85883 0.78537 0.79014 0.80658 1.20048 1.19644 1.20383 1.23304 0.97174 1.01334 1.02281 1.22485 0.91591 1.02741 1.00455 1.20903 0.98619 0.81981 0.89216 0.87621 1.86611 1.26841 1.26675 1.96494 1.20418 0.95480 0.99262 0.97551 1.21207 0.95342 0.99967 0.96928 1.21460 1.00716 0.96523 0.95542 1.21534 0.93468 0.98710 1.00507 1.21420 0.97421 0.99485 0.96193 1.21266 0.99825 0.96899 0.96380 0.89877 0.91740 0.88648 0.74190 0.85430 0.85096 0.92673 0.89850 0.88324 0.89275 0.91461 0.76332 0.84104 0.83755 0.83993 0.84356 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.62 8.23 71.98 0.59 -3.02 16 2 C 0.11 2.64 2.67 44.99 0.12 2.76 16 3 H 0.09 2.29 7.48 -2.39 -0.02 2.27 16 4 N -1.11 -32.42 5.35 -169.39 -0.91 -33.33 16 5 S 2.62 104.66 5.33 -56.49 -0.30 104.36 16 6 O -1.00 -42.57 17.39 -127.65 -2.22 -44.79 16 7 O -0.99 -48.70 17.10 -127.65 -2.18 -50.89 16 8 C -0.55 -21.94 4.88 71.98 0.35 -21.58 16 9 C 0.01 0.42 1.34 -52.93 -0.07 0.35 16 10 C -0.52 -28.95 7.66 25.60 0.20 -28.76 16 11 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 12 C 0.04 2.25 5.39 84.66 0.46 2.71 16 13 N -0.89 -48.47 12.93 21.45 0.28 -48.19 16 14 Si 0.93 44.25 29.55 68.60 2.03 46.28 16 15 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C -0.20 -8.63 9.96 30.62 0.30 -8.33 16 19 C -0.13 -5.87 9.44 30.62 0.29 -5.58 16 20 C 0.15 3.16 3.23 29.85 0.10 3.26 16 21 H 0.11 2.35 8.00 -2.38 -0.02 2.33 16 22 O -0.56 -10.96 12.79 -148.98 -1.91 -12.86 16 23 C -0.13 -2.30 4.81 -19.87 -0.10 -2.39 16 24 C -0.12 -1.71 7.30 22.27 0.16 -1.55 16 25 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 26 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 27 C -0.13 -1.94 10.05 22.26 0.22 -1.71 16 28 C -0.13 -2.28 9.67 22.27 0.22 -2.07 16 29 H 0.08 1.27 6.71 -2.39 -0.02 1.25 16 30 H 0.06 1.37 5.97 -2.39 -0.01 1.35 16 31 H 0.09 1.39 5.59 -2.39 -0.01 1.37 16 32 H 0.42 11.54 8.54 -96.74 -0.83 10.71 16 33 H 0.13 5.33 8.14 -2.39 -0.02 5.32 16 34 H 0.13 4.24 7.11 -2.39 -0.02 4.22 16 35 H 0.26 13.64 8.32 -92.71 -0.77 12.87 16 36 H 0.08 3.55 8.14 -2.38 -0.02 3.53 16 37 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 39 H 0.07 3.18 8.14 -2.39 -0.02 3.17 16 40 H 0.39 5.06 5.65 -74.06 -0.42 4.64 16 41 H 0.14 1.44 5.89 -2.91 -0.02 1.42 16 42 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.13 2.15 8.04 -2.91 -0.02 2.13 16 Total: -1.00 -72.05 376.48 -2.15 -74.20 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.22 Total: 33.96 kcal Atomic # 6 Polarization: -72.03 SS G_CDS: 3.29 Total: -68.75 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -0.63 Total: -81.52 kcal Atomic # 8 Polarization: -102.23 SS G_CDS: -6.31 Total: -108.54 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 104.66 SS G_CDS: -0.30 Total: 104.36 kcal Total: -72.05 -2.15 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831550083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.300 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds