Wall clock time and date at job start Tue Mar 31 2020 22:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47126 * 2 1 4 4 N 1.41596 * 114.00247 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00518 * 270.00232 * 4 3 2 6 6 C 1.50699 * 109.47018 * 270.00029 * 5 4 3 7 7 C 1.38230 * 120.00105 * 269.72339 * 6 5 4 8 8 C 1.38237 * 120.00123 * 179.76296 * 7 6 5 9 9 C 1.38234 * 119.99886 * 0.49060 * 8 7 6 10 10 C 1.38227 * 120.00307 * 359.78563 * 9 8 7 11 11 C 1.38242 * 120.00002 * 89.99448 * 6 5 4 12 12 S 1.65601 * 119.99492 * 90.00007 * 4 3 2 13 13 O 1.42103 * 104.27640 * 158.93038 * 12 4 3 14 14 O 1.42094 * 104.27874 * 31.07328 * 12 4 3 15 15 C 1.81405 * 104.45027 * 274.99926 * 12 4 3 16 16 C 1.52999 * 109.47090 * 187.17955 * 15 12 4 17 17 C 1.50697 * 115.55185 * 294.77356 * 16 15 12 18 18 H 1.08000 * 120.00013 * 95.20457 * 17 16 15 19 19 C 1.37875 * 119.99657 * 274.93075 * 17 16 15 20 20 N 1.31513 * 120.00091 * 357.94334 * 19 17 16 21 21 Si 1.86800 * 119.99916 * 177.93974 * 19 17 16 22 22 H 1.48506 * 109.47170 * 60.00049 * 21 19 17 23 23 H 1.48500 * 109.47530 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47473 * 300.00343 * 21 19 17 25 25 C 1.53008 * 117.49684 * 80.44293 * 16 15 12 26 26 C 1.53000 * 117.49729 * 149.09802 * 16 15 12 27 27 H 1.08996 * 109.47318 * 300.00296 * 1 2 3 28 28 H 1.09005 * 109.47068 * 60.00649 * 1 2 3 29 29 H 1.09002 * 109.46667 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47318 * 239.99704 * 2 1 3 31 31 H 1.09005 * 109.47068 * 119.99351 * 2 1 3 32 32 H 1.09007 * 109.47123 * 29.99427 * 5 4 3 33 33 H 1.08994 * 109.47553 * 150.00210 * 5 4 3 34 34 H 1.08002 * 119.99948 * 359.97438 * 7 6 5 35 35 H 1.08004 * 120.00383 * 180.25001 * 8 7 6 36 36 H 1.08000 * 119.99931 * 179.76680 * 9 8 7 37 37 H 1.07997 * 120.00314 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.00321 * 0.02562 * 11 6 5 39 39 H 1.08993 * 109.47021 * 67.17907 * 15 12 4 40 40 H 1.09000 * 109.46825 * 307.18104 * 15 12 4 41 41 H 0.97003 * 119.99844 * 185.02527 * 20 19 17 42 42 H 1.08999 * 117.49723 * 215.00336 * 25 16 15 43 43 H 1.09002 * 117.49906 * 0.02562 * 25 16 15 44 44 H 1.08998 * 117.49827 * 359.97438 * 26 16 15 45 45 H 1.09007 * 117.49482 * 144.97547 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4179 1.4592 0.0006 5 6 4.1477 1.5172 1.2695 6 6 4.2856 2.9534 1.7044 7 6 5.3854 3.6923 1.3104 8 6 5.5096 5.0112 1.7052 9 6 4.5389 5.5883 2.5025 10 6 3.4419 4.8478 2.9013 11 6 3.3151 3.5304 2.5020 12 16 4.2438 1.5244 -1.4333 13 8 5.4887 2.1197 -1.0939 14 8 3.3444 2.1659 -2.3269 15 6 4.4757 -0.2128 -1.9015 16 6 5.3871 -0.2932 -3.1278 17 6 4.8298 0.3079 -4.3924 18 1 5.0767 1.3242 -4.6616 19 6 4.0093 -0.4416 -5.2085 20 7 3.7456 -1.6936 -4.9045 21 14 3.2721 0.3215 -6.7459 22 1 4.3632 0.7695 -7.6482 23 1 2.4331 -0.6850 -7.4447 24 1 2.4334 1.4869 -6.3669 25 6 6.8951 -0.1784 -2.8959 26 6 6.2779 -1.5294 -3.2661 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.6007 0.9585 2.0291 33 1 5.1377 1.0802 1.1396 34 1 6.1461 3.2401 0.6911 35 1 6.3668 5.5898 1.3940 36 1 4.6378 6.6176 2.8141 37 1 2.6838 5.2985 3.5246 38 1 2.4582 2.9517 2.8139 39 1 3.5090 -0.6576 -2.1375 40 1 4.9324 -0.7545 -1.0732 41 1 3.2287 -2.2424 -5.5150 42 1 7.4841 0.3318 -3.6580 43 1 7.2379 -0.0461 -1.8697 44 1 6.2150 -2.2852 -2.4832 45 1 6.4605 -1.9082 -4.2718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832775221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:06 Heat of formation + Delta-G solvation = -13.502842 kcal Electronic energy + Delta-G solvation = -28697.566097 eV Core-core repulsion = 24810.530904 eV Total energy + Delta-G solvation = -3887.035193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.20855 -37.65526 -36.83175 -36.44318 -35.19578 -34.00706 -32.07393 -31.34853 -30.74852 -29.55895 -28.29812 -25.60668 -25.31295 -22.80507 -22.44584 -21.30905 -21.22248 -19.72133 -19.04944 -17.53590 -17.28311 -16.65246 -16.24012 -15.54820 -15.08271 -15.03150 -14.91645 -14.82967 -14.65171 -14.46748 -13.89014 -13.30711 -13.22177 -13.20492 -12.84091 -12.54676 -12.44134 -12.13343 -12.03686 -11.88836 -11.66468 -11.46702 -11.36436 -11.19614 -11.14775 -11.08582 -10.91299 -10.76010 -10.63662 -10.50113 -10.16264 -9.98832 -9.74017 -9.23429 -9.07676 -8.77399 -8.67306 -8.57887 -8.14419 -6.16957 -4.29966 0.61363 1.44032 1.55099 2.53884 3.31223 3.33626 3.42953 3.84236 4.01510 4.35401 4.48638 4.79632 4.86393 4.91259 5.00562 5.09423 5.09751 5.14188 5.15857 5.18307 5.30641 5.37205 5.44488 5.53545 5.63924 5.71809 5.73306 5.79909 5.88651 5.99682 6.08133 6.12044 6.18831 6.24700 6.31343 6.53726 6.54861 6.66209 6.67264 6.75570 6.93465 7.12742 7.14652 7.17314 7.39206 7.76098 8.14271 8.76208 9.42661 10.89873 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.004268 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.182408 B = 6559.085186 C = 7265.411002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 O -0.111 6.111 4 N -0.868 5.868 5 C 0.152 3.848 6 C -0.109 4.109 7 C -0.094 4.094 8 C -0.128 4.128 9 C -0.119 4.119 10 C -0.133 4.133 11 C -0.096 4.096 12 S 2.600 3.400 13 O -0.947 6.947 14 O -0.925 6.925 15 C -0.556 4.556 16 C 0.039 3.961 17 C -0.517 4.517 18 H 0.068 0.932 19 C 0.082 3.918 20 N -0.875 5.875 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.267 1.267 25 C -0.207 4.207 26 C -0.133 4.133 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.264 0.736 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 3.614 15.878 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 O -0.121 6.121 4 N -0.738 5.738 5 C 0.028 3.972 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.146 4.146 9 C -0.137 4.137 10 C -0.151 4.151 11 C -0.115 4.115 12 S 2.697 3.303 13 O -0.938 6.938 14 O -0.915 6.915 15 C -0.689 4.689 16 C 0.037 3.963 17 C -0.554 4.554 18 H 0.086 0.914 19 C -0.123 4.123 20 N -0.510 5.510 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.244 4.244 26 C -0.173 4.173 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.164 0.836 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.419 4.440 15.451 16.139 hybrid contribution -0.677 -0.757 -0.630 1.195 sum -2.096 3.683 14.821 15.415 Atomic orbital electron populations 1.21686 0.92330 1.02873 1.03455 1.23256 0.96365 0.86111 1.01607 1.90682 1.00590 1.24241 1.96551 1.61161 1.01700 1.89500 1.21485 1.20432 0.96559 0.93520 0.86715 1.20165 0.95454 0.96814 0.98661 1.21585 0.98111 0.94229 0.97391 1.21193 0.99406 0.95421 0.98570 1.21160 0.94693 0.99555 0.98319 1.21068 0.98257 0.94524 1.01214 1.21016 0.97877 0.95222 0.97354 1.05951 0.73587 0.79109 0.71606 1.93493 1.42852 1.75337 1.82159 1.93548 1.63733 1.72701 1.61541 1.30203 1.10716 1.21113 1.06902 1.18272 0.85626 1.01120 0.91321 1.20498 1.29735 0.99845 1.05297 0.91418 1.24947 0.94686 0.94778 0.97910 1.69983 1.38291 1.06509 1.36239 0.86680 0.79739 0.79641 0.82449 1.19833 1.21033 1.19131 1.23206 0.98002 1.02813 1.00389 1.22528 1.04088 0.89725 1.00916 0.91782 0.91136 0.90450 0.91907 0.92271 0.89139 0.88354 0.83642 0.86051 0.86429 0.86376 0.86256 0.85136 0.88165 0.92659 0.89431 0.90694 0.91640 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.01 0.07 7.12 37.16 0.26 0.34 16 3 O -0.11 -1.87 10.93 -22.59 -0.25 -2.11 16 4 N -0.87 -14.63 3.20 -11.66 -0.04 -14.67 16 5 C 0.15 2.06 5.78 -5.20 -0.03 2.03 16 6 C -0.11 -1.57 5.45 -104.62 -0.57 -2.14 16 7 C -0.09 -1.42 8.93 -39.58 -0.35 -1.77 16 8 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 9 C -0.12 -1.42 10.05 -39.59 -0.40 -1.81 16 10 C -0.13 -1.58 10.05 -39.58 -0.40 -1.97 16 11 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 12 S 2.60 53.90 5.27 -107.50 -0.57 53.33 16 13 O -0.95 -19.49 14.32 -57.54 -0.82 -20.31 16 14 O -0.92 -23.37 17.50 -63.08 -1.10 -24.47 16 15 C -0.56 -11.47 5.93 37.16 0.22 -11.25 16 16 C 0.04 0.93 1.40 -155.66 -0.22 0.72 16 17 C -0.52 -14.03 8.24 -34.44 -0.28 -14.32 16 18 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 20 N -0.87 -23.76 12.70 55.43 0.70 -23.06 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 25 C -0.21 -4.38 9.96 -26.69 -0.27 -4.65 16 26 C -0.13 -2.96 9.20 -26.69 -0.25 -3.21 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.10 1.18 7.59 -51.93 -0.39 0.79 16 34 H 0.15 2.28 6.28 -52.49 -0.33 1.95 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 2.81 6.86 -51.93 -0.36 2.45 16 40 H 0.10 1.68 8.09 -51.92 -0.42 1.26 16 41 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 42 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -32.56 389.48 -10.89 -43.45 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.89 Total: 6.48 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: -2.77 Total: -40.87 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.67 Total: -37.72 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -2.17 Total: -46.90 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.57 Total: 53.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.56 -10.89 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832775221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.943 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds