Wall clock time and date at job start Tue Mar 31 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47126 * 2 1 4 4 N 1.41596 * 114.00247 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00518 * 270.00232 * 4 3 2 6 6 C 1.50699 * 109.47018 * 270.00029 * 5 4 3 7 7 C 1.38230 * 120.00105 * 269.72339 * 6 5 4 8 8 C 1.38237 * 120.00123 * 179.76296 * 7 6 5 9 9 C 1.38234 * 119.99886 * 0.49060 * 8 7 6 10 10 C 1.38227 * 120.00307 * 359.78563 * 9 8 7 11 11 C 1.38242 * 120.00002 * 89.99448 * 6 5 4 12 12 S 1.65601 * 119.99492 * 90.00007 * 4 3 2 13 13 O 1.42103 * 104.27640 * 158.93038 * 12 4 3 14 14 O 1.42094 * 104.27874 * 31.07328 * 12 4 3 15 15 C 1.81405 * 104.45027 * 274.99926 * 12 4 3 16 16 C 1.52999 * 109.47090 * 187.17955 * 15 12 4 17 17 C 1.50697 * 115.55185 * 294.77356 * 16 15 12 18 18 H 1.08000 * 120.00013 * 95.20457 * 17 16 15 19 19 C 1.37875 * 119.99657 * 274.93075 * 17 16 15 20 20 N 1.31513 * 120.00091 * 357.94334 * 19 17 16 21 21 Si 1.86800 * 119.99916 * 177.93974 * 19 17 16 22 22 H 1.48506 * 109.47170 * 60.00049 * 21 19 17 23 23 H 1.48500 * 109.47530 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47473 * 300.00343 * 21 19 17 25 25 C 1.53008 * 117.49684 * 80.44293 * 16 15 12 26 26 C 1.53000 * 117.49729 * 149.09802 * 16 15 12 27 27 H 1.08996 * 109.47318 * 300.00296 * 1 2 3 28 28 H 1.09005 * 109.47068 * 60.00649 * 1 2 3 29 29 H 1.09002 * 109.46667 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47318 * 239.99704 * 2 1 3 31 31 H 1.09005 * 109.47068 * 119.99351 * 2 1 3 32 32 H 1.09007 * 109.47123 * 29.99427 * 5 4 3 33 33 H 1.08994 * 109.47553 * 150.00210 * 5 4 3 34 34 H 1.08002 * 119.99948 * 359.97438 * 7 6 5 35 35 H 1.08004 * 120.00383 * 180.25001 * 8 7 6 36 36 H 1.08000 * 119.99931 * 179.76680 * 9 8 7 37 37 H 1.07997 * 120.00314 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.00321 * 0.02562 * 11 6 5 39 39 H 1.08993 * 109.47021 * 67.17907 * 15 12 4 40 40 H 1.09000 * 109.46825 * 307.18104 * 15 12 4 41 41 H 0.97003 * 119.99844 * 185.02527 * 20 19 17 42 42 H 1.08999 * 117.49723 * 215.00336 * 25 16 15 43 43 H 1.09002 * 117.49906 * 0.02562 * 25 16 15 44 44 H 1.08998 * 117.49827 * 359.97438 * 26 16 15 45 45 H 1.09007 * 117.49482 * 144.97547 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4179 1.4592 0.0006 5 6 4.1477 1.5172 1.2695 6 6 4.2856 2.9534 1.7044 7 6 5.3854 3.6923 1.3104 8 6 5.5096 5.0112 1.7052 9 6 4.5389 5.5883 2.5025 10 6 3.4419 4.8478 2.9013 11 6 3.3151 3.5304 2.5020 12 16 4.2438 1.5244 -1.4333 13 8 5.4887 2.1197 -1.0939 14 8 3.3444 2.1659 -2.3269 15 6 4.4757 -0.2128 -1.9015 16 6 5.3871 -0.2932 -3.1278 17 6 4.8298 0.3079 -4.3924 18 1 5.0767 1.3242 -4.6616 19 6 4.0093 -0.4416 -5.2085 20 7 3.7456 -1.6936 -4.9045 21 14 3.2721 0.3215 -6.7459 22 1 4.3632 0.7695 -7.6482 23 1 2.4331 -0.6850 -7.4447 24 1 2.4334 1.4869 -6.3669 25 6 6.8951 -0.1784 -2.8959 26 6 6.2779 -1.5294 -3.2661 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.6007 0.9585 2.0291 33 1 5.1377 1.0802 1.1396 34 1 6.1461 3.2401 0.6911 35 1 6.3668 5.5898 1.3940 36 1 4.6378 6.6176 2.8141 37 1 2.6838 5.2985 3.5246 38 1 2.4582 2.9517 2.8139 39 1 3.5090 -0.6576 -2.1375 40 1 4.9324 -0.7545 -1.0732 41 1 3.2287 -2.2424 -5.5150 42 1 7.4841 0.3318 -3.6580 43 1 7.2379 -0.0461 -1.8697 44 1 6.2150 -2.2852 -2.4832 45 1 6.4605 -1.9082 -4.2718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832775221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:05 Heat of formation + Delta-G solvation = -32.218842 kcal Electronic energy + Delta-G solvation = -28698.377684 eV Core-core repulsion = 24810.530904 eV Total energy + Delta-G solvation = -3887.846780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.20010 -38.86268 -38.60369 -38.07746 -36.91316 -35.11386 -34.10606 -32.35673 -31.71085 -30.68922 -29.92282 -27.54948 -26.48375 -23.83614 -23.41890 -22.97454 -22.31958 -21.43918 -20.54513 -19.04214 -18.52679 -18.37190 -17.41091 -16.99704 -16.74920 -16.44223 -16.19966 -16.05482 -15.92708 -15.75535 -15.56955 -14.95163 -14.25926 -14.21690 -13.99782 -13.84716 -13.70001 -13.63365 -13.41628 -13.17872 -13.09892 -13.00966 -12.91069 -12.88497 -12.74641 -12.47690 -12.37632 -12.28543 -12.14981 -11.91849 -11.75196 -11.58082 -11.10197 -10.97563 -10.58242 -10.49740 -9.92455 -9.75513 -9.64640 -8.22094 -6.38280 -0.92445 0.41386 0.56584 1.21125 1.34813 1.38955 1.46468 2.36770 2.56802 2.91400 2.95510 3.04838 3.32361 3.40676 3.86112 3.92276 3.93422 4.01033 4.17259 4.18197 4.21824 4.26519 4.36766 4.38764 4.48654 4.52718 4.56001 4.65491 4.73056 4.79123 4.84247 4.92538 4.95473 4.99450 5.15124 5.20138 5.22192 5.25968 5.42315 5.60492 5.62765 5.67797 5.67975 5.74121 5.96866 6.17903 6.18540 6.68281 7.34926 8.84029 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.004268 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.182408 B = 6559.085186 C = 7265.411002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.005 4.005 3 O -0.130 6.130 4 N -0.862 5.862 5 C 0.144 3.856 6 C -0.128 4.128 7 C -0.121 4.121 8 C -0.142 4.142 9 C -0.121 4.121 10 C -0.135 4.135 11 C -0.105 4.105 12 S 2.612 3.388 13 O -0.953 6.953 14 O -0.984 6.984 15 C -0.550 4.550 16 C 0.005 3.995 17 C -0.536 4.536 18 H 0.046 0.954 19 C 0.044 3.956 20 N -0.889 5.889 21 Si 0.927 3.073 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.281 1.281 25 C -0.192 4.192 26 C -0.129 4.129 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.266 0.734 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 3.331 18.349 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 O -0.138 6.138 4 N -0.736 5.736 5 C 0.021 3.979 6 C -0.130 4.130 7 C -0.140 4.140 8 C -0.160 4.160 9 C -0.139 4.139 10 C -0.153 4.153 11 C -0.123 4.123 12 S 2.710 3.290 13 O -0.944 6.944 14 O -0.974 6.974 15 C -0.684 4.684 16 C 0.002 3.998 17 C -0.573 4.573 18 H 0.064 0.936 19 C -0.159 4.159 20 N -0.525 5.525 21 Si 0.752 3.248 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.206 1.206 25 C -0.229 4.229 26 C -0.168 4.168 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.807 4.150 17.911 18.474 hybrid contribution -0.553 -0.613 -1.295 1.536 sum -2.360 3.537 16.616 17.151 Atomic orbital electron populations 1.21748 0.90641 1.04388 1.03370 1.23538 0.97752 0.84782 1.02209 1.90661 1.00100 1.26393 1.96678 1.60639 1.02058 1.89436 1.21454 1.20815 0.97340 0.93937 0.85783 1.20336 0.95812 0.97350 0.99459 1.21645 0.98604 0.95376 0.98406 1.21466 1.00498 0.95102 0.98940 1.21530 0.94094 1.00886 0.97367 1.21481 0.98717 0.94223 1.00863 1.21314 0.97988 0.96008 0.97012 1.05293 0.73086 0.78896 0.71689 1.93481 1.43059 1.75490 1.82344 1.93474 1.65335 1.74229 1.64379 1.30052 1.09751 1.21528 1.07021 1.18378 0.87378 1.02605 0.91424 1.20695 1.30241 0.99125 1.07252 0.93601 1.25464 0.95118 0.95312 0.99976 1.70015 1.38780 1.06873 1.36876 0.86082 0.79303 0.78850 0.80549 1.19049 1.19430 1.20642 1.23267 0.96104 1.01634 1.01891 1.22479 1.03526 0.90250 1.00587 0.90073 0.93021 0.88121 0.93837 0.89043 0.85695 0.87043 0.85215 0.84799 0.83665 0.83573 0.84544 0.86406 0.84065 0.92478 0.90016 0.87711 0.89187 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 10.28 71.98 0.74 -2.23 16 2 C 0.00 -0.12 7.12 71.98 0.51 0.39 16 3 O -0.13 -4.23 10.93 -28.14 -0.31 -4.53 16 4 N -0.86 -28.17 3.20 -190.80 -0.61 -28.79 16 5 C 0.14 3.60 5.78 85.63 0.49 4.10 16 6 C -0.13 -3.51 5.45 -19.87 -0.11 -3.61 16 7 C -0.12 -3.59 8.93 22.27 0.20 -3.40 16 8 C -0.14 -3.63 10.05 22.27 0.22 -3.40 16 9 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 10 C -0.14 -2.85 10.05 22.27 0.22 -2.63 16 11 C -0.10 -2.48 9.70 22.27 0.22 -2.26 16 12 S 2.61 108.86 5.27 -56.49 -0.30 108.56 16 13 O -0.95 -39.27 14.32 -127.65 -1.83 -41.10 16 14 O -0.98 -51.61 17.50 -122.35 -2.14 -53.75 16 15 C -0.55 -22.33 5.93 71.98 0.43 -21.91 16 16 C 0.00 0.22 1.40 -52.93 -0.07 0.14 16 17 C -0.54 -29.84 8.24 25.60 0.21 -29.63 16 18 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 19 C 0.04 2.45 5.42 84.65 0.46 2.91 16 20 N -0.89 -48.71 12.70 21.45 0.27 -48.44 16 21 Si 0.93 44.51 29.54 68.60 2.03 46.53 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -14.02 7.11 99.48 0.71 -13.32 16 25 C -0.19 -7.92 9.96 30.62 0.30 -7.61 16 26 C -0.13 -5.62 9.20 30.62 0.28 -5.34 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.28 6.73 -2.39 -0.02 1.26 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.13 2.20 8.09 -2.38 -0.02 2.18 16 33 H 0.11 2.44 7.59 -2.39 -0.02 2.43 16 34 H 0.13 4.13 6.28 -2.91 -0.02 4.12 16 35 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.12 5.10 6.86 -2.39 -0.02 5.09 16 40 H 0.14 4.39 8.09 -2.39 -0.02 4.37 16 41 H 0.27 13.87 8.32 -92.71 -0.77 13.09 16 42 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 44 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 45 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -72.54 389.48 2.42 -70.12 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.97 Total: 28.26 kcal Atomic # 6 Polarization: -81.20 SS G_CDS: 4.33 Total: -76.86 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -0.34 Total: -77.22 kcal Atomic # 8 Polarization: -95.11 SS G_CDS: -4.28 Total: -99.38 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 108.86 SS G_CDS: -0.30 Total: 108.56 kcal Total: -72.54 2.42 -70.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832775221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.902 kcal (2) G-P(sol) polarization free energy of solvation -72.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds