Wall clock time and date at job start Tue Mar 31 2020 22:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00450 * 2 1 4 4 O 1.20829 * 119.99696 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00221 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47109 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47022 * 179.97438 * 6 5 3 8 8 C 1.37094 * 120.00582 * 270.00430 * 7 6 5 9 9 H 1.08005 * 119.99509 * 9.60102 * 8 7 6 10 10 C 1.38944 * 120.00492 * 189.60312 * 8 7 6 11 11 N 1.31419 * 119.99599 * 10.71062 * 10 8 7 12 12 Si 1.86795 * 120.00499 * 190.70525 * 10 8 7 13 13 H 1.48503 * 109.46949 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47095 * 119.99673 * 12 10 8 15 15 H 1.48500 * 109.47408 * 240.00091 * 12 10 8 16 16 C 1.34780 * 119.99762 * 90.00564 * 7 6 5 17 17 O 1.21288 * 120.00021 * 242.18294 * 16 7 6 18 18 C 1.50704 * 119.99835 * 62.17891 * 16 7 6 19 19 H 1.08997 * 109.46972 * 302.51709 * 18 16 7 20 20 C 1.52999 * 109.47001 * 62.52269 * 18 16 7 21 21 O 1.42900 * 109.46593 * 182.51925 * 18 16 7 22 22 C 1.35956 * 116.99654 * 151.73897 * 21 18 16 23 23 C 1.38708 * 120.02846 * 88.16822 * 22 21 18 24 24 C 1.38152 * 119.96906 * 179.97438 * 23 22 21 25 25 C 1.38456 * 120.02584 * 359.97438 * 24 23 22 26 26 F 1.35099 * 119.96665 * 179.97438 * 25 24 23 27 27 C 1.38452 * 120.06349 * 0.25292 * 25 24 23 28 28 C 1.38149 * 120.02982 * 359.49319 * 27 25 24 29 29 H 1.08998 * 109.46751 * 59.99264 * 1 2 3 30 30 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46824 * 300.00006 * 1 2 3 32 32 H 1.09001 * 109.46626 * 60.00737 * 5 3 2 33 33 H 1.08998 * 109.46863 * 300.00180 * 5 3 2 34 34 H 1.09009 * 109.46528 * 60.00233 * 6 5 3 35 35 H 1.08993 * 109.47407 * 300.00770 * 6 5 3 36 36 H 0.97001 * 119.99638 * 185.00619 * 11 10 8 37 37 H 1.08996 * 109.47534 * 59.88593 * 20 18 16 38 38 H 1.09000 * 109.47046 * 179.88975 * 20 18 16 39 39 H 1.09000 * 109.46773 * 299.88574 * 20 18 16 40 40 H 1.08001 * 120.01884 * 359.97438 * 23 22 21 41 41 H 1.07990 * 119.98647 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.98380 * 179.72573 * 27 25 24 43 43 H 1.08000 * 120.01602 * 180.22878 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5665 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4633 2.8185 0.0023 8 6 6.1470 2.8541 1.1900 9 1 5.6265 2.6705 2.1184 10 6 7.5094 3.1265 1.1996 11 7 8.1015 3.5549 0.1074 12 14 8.4996 2.8837 2.7648 13 1 7.6050 2.3981 3.8461 14 1 9.5715 1.8850 2.5226 15 1 9.1092 4.1757 3.1704 16 6 6.1371 2.8540 -1.1644 17 8 6.9126 1.9644 -1.4441 18 6 5.9269 3.9990 -2.1214 19 1 4.8715 4.0621 -2.3863 20 6 6.3652 5.3058 -1.4572 21 8 6.7021 3.7814 -3.3020 22 6 6.2338 4.3250 -4.4568 23 6 6.5838 5.6210 -4.8059 24 6 6.1076 6.1720 -5.9799 25 6 5.2818 5.4309 -6.8080 26 9 4.8164 5.9711 -7.9555 27 6 4.9278 4.1389 -6.4584 28 6 5.4068 3.5836 -5.2876 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9564 0.7805 -0.8892 33 1 3.9558 0.7807 0.8908 34 1 3.6102 3.2358 0.8912 35 1 3.6109 3.2363 -0.8888 36 1 9.0638 3.6757 0.0929 37 1 7.4201 5.2420 -1.1906 38 1 6.2150 6.1337 -2.1501 39 1 5.7726 5.4727 -0.5578 40 1 7.2283 6.1991 -4.1603 41 1 6.3796 7.1811 -6.2517 42 1 4.2800 3.5635 -7.1032 43 1 5.1336 2.5744 -5.0170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:19 Heat of formation + Delta-G solvation = -147.540177 kcal Electronic energy + Delta-G solvation = -29821.055355 eV Core-core repulsion = 25361.994691 eV Total energy + Delta-G solvation = -4459.060664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.88011 -40.30727 -39.76625 -38.50383 -36.69720 -36.36285 -34.58478 -32.37269 -31.26209 -31.03171 -30.11056 -28.79872 -27.60137 -25.19388 -24.02627 -23.17892 -22.89867 -21.81781 -20.54525 -19.36573 -17.80709 -17.57192 -17.28510 -16.94646 -16.48314 -16.42530 -16.32027 -15.62544 -15.39773 -15.00882 -14.61488 -14.31712 -14.10647 -13.87123 -13.65958 -13.56515 -13.38956 -13.21474 -12.76142 -12.61822 -12.49755 -12.35804 -11.82393 -11.77480 -11.44649 -11.37290 -11.27043 -11.09160 -10.97032 -10.78019 -10.68973 -10.57019 -10.47125 -10.32048 -10.12330 -9.49880 -9.20512 -9.13121 -8.36478 -8.28597 -7.42569 -6.15563 -3.65373 1.08060 1.21651 2.38706 2.83416 3.26479 3.33261 3.37209 3.38578 3.76008 4.09475 4.26874 4.31732 4.77301 4.81764 4.89363 5.06963 5.11232 5.13298 5.19194 5.28545 5.38300 5.41068 5.44435 5.57377 5.65897 5.71732 5.85773 5.89854 5.95824 6.08036 6.11302 6.16893 6.26989 6.42824 6.52063 6.53535 6.57605 6.61958 6.80604 7.33013 7.49167 7.89358 7.94239 8.06724 8.96391 9.26075 9.48703 9.93149 10.94934 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007597 B = 0.004265 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.771548 B = 6564.109670 C = 9661.451242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.466 3.534 4 O -0.513 6.513 5 C -0.134 4.134 6 C 0.149 3.851 7 N -0.551 5.551 8 C -0.293 4.293 9 H 0.090 0.910 10 C 0.019 3.981 11 N -0.874 5.874 12 Si 0.920 3.080 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.287 1.287 16 C 0.583 3.417 17 O -0.485 6.485 18 C 0.083 3.917 19 H 0.056 0.944 20 C -0.151 4.151 21 O -0.306 6.306 22 C 0.104 3.896 23 C -0.111 4.111 24 C -0.140 4.140 25 C 0.078 3.922 26 F -0.144 7.144 27 C -0.140 4.140 28 C -0.114 4.114 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.269 0.731 37 H 0.100 0.900 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 0.791 -6.869 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.309 3.691 4 O -0.401 6.401 5 C -0.174 4.174 6 C 0.023 3.977 7 N -0.281 5.281 8 C -0.419 4.419 9 H 0.108 0.892 10 C -0.183 4.183 11 N -0.517 5.517 12 Si 0.749 3.251 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.213 1.213 16 C 0.370 3.630 17 O -0.355 6.355 18 C 0.024 3.976 19 H 0.074 0.926 20 C -0.208 4.208 21 O -0.223 6.223 22 C 0.059 3.941 23 C -0.130 4.130 24 C -0.159 4.159 25 C 0.058 3.942 26 F -0.123 7.123 27 C -0.159 4.159 28 C -0.132 4.132 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.370 0.617 -7.077 11.758 hybrid contribution 0.078 0.198 0.547 0.587 sum -9.292 0.815 -6.530 11.386 Atomic orbital electron populations 1.23202 0.77093 1.03277 1.02350 1.86560 1.22934 1.34204 1.84304 1.24160 0.92428 0.80960 0.71510 1.90638 1.67446 1.36284 1.45711 1.22181 0.85420 1.03352 1.06418 1.20730 0.83110 0.91513 1.02330 1.42652 1.01873 1.79048 1.04529 1.19347 0.92137 1.46205 0.84258 0.89248 1.24928 0.97386 0.97786 0.98174 1.69281 1.10474 1.44408 1.27502 0.85966 0.79999 0.77605 0.81573 1.19999 1.21135 1.21341 1.18800 0.79349 0.84428 0.80377 1.90434 1.34372 1.37362 1.73344 1.22575 0.92859 0.98284 0.83928 0.92610 1.22161 1.06572 0.92787 0.99282 1.86247 1.48522 1.74211 1.13273 1.18950 0.94577 0.91369 0.89202 1.21478 1.00035 0.94757 0.96718 1.21008 0.99181 1.00789 0.94937 1.17671 0.99181 0.93100 0.84209 1.91473 1.87314 1.86168 1.47360 1.20983 1.02429 0.94119 0.98338 1.21386 0.96426 1.01055 0.94357 0.92115 0.88475 0.92063 0.88034 0.86990 0.90743 0.92418 0.91873 0.88170 0.94738 0.91188 0.84217 0.84622 0.84623 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.96 10.56 -39.24 -0.41 -5.37 16 3 C 0.47 7.16 7.96 36.01 0.29 7.45 16 4 O -0.51 -8.81 15.73 -18.75 -0.29 -9.11 16 5 C -0.13 -2.17 6.14 -27.88 -0.17 -2.34 16 6 C 0.15 2.75 4.85 -4.04 -0.02 2.73 16 7 N -0.55 -12.55 2.46 -114.81 -0.28 -12.83 16 8 C -0.29 -7.26 9.73 -14.94 -0.15 -7.40 16 9 H 0.09 2.10 7.85 -52.48 -0.41 1.69 16 10 C 0.02 0.49 5.21 -17.47 -0.09 0.40 16 11 N -0.87 -23.53 7.96 55.50 0.44 -23.09 16 12 Si 0.92 20.60 29.57 -169.99 -5.03 15.57 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.58 14.08 3.79 -10.98 -0.04 14.04 16 17 O -0.49 -13.63 15.95 -14.35 -0.23 -13.86 16 18 C 0.08 1.72 3.05 -27.88 -0.09 1.63 16 19 H 0.06 1.03 7.04 -51.93 -0.37 0.66 16 20 C -0.15 -2.99 8.94 37.16 0.33 -2.66 16 21 O -0.31 -6.35 9.24 -39.50 -0.37 -6.72 16 22 C 0.10 1.73 5.55 -39.24 -0.22 1.51 16 23 C -0.11 -1.60 9.31 -39.44 -0.37 -1.97 16 24 C -0.14 -1.76 10.02 -39.53 -0.40 -2.16 16 25 C 0.08 1.00 7.30 -39.42 -0.29 0.72 16 26 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 27 C -0.14 -1.76 10.02 -39.54 -0.40 -2.15 16 28 C -0.11 -1.65 9.98 -39.44 -0.39 -2.04 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.07 1.35 8.00 -51.92 -0.42 0.93 16 35 H 0.06 1.00 6.99 -51.93 -0.36 0.64 16 36 H 0.27 7.19 8.32 -40.82 -0.34 6.85 16 37 H 0.10 2.28 6.30 -51.93 -0.33 1.95 16 38 H 0.03 0.57 7.09 -51.93 -0.37 0.20 16 39 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 40 H 0.14 1.91 7.64 -52.49 -0.40 1.51 16 41 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -31.18 374.68 -7.00 -38.18 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.59 Total: 4.22 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.93 Total: 9.17 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.16 Total: -35.92 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.30 Total: -35.05 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.18 -7.00 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.356 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds