Wall clock time and date at job start Tue Mar 31 2020 22:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99894 * 2 1 4 4 O 1.20830 * 119.99694 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00139 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47336 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47566 * 179.97438 * 6 5 3 8 8 C 1.37097 * 119.99816 * 270.00305 * 7 6 5 9 9 H 1.07997 * 120.00195 * 342.73213 * 8 7 6 10 10 C 1.38953 * 119.99871 * 162.73764 * 8 7 6 11 11 N 1.31414 * 120.00134 * 343.52922 * 10 8 7 12 12 Si 1.86801 * 119.99873 * 163.52892 * 10 8 7 13 13 H 1.48498 * 109.47193 * 90.00237 * 12 10 8 14 14 H 1.48502 * 109.47137 * 210.00033 * 12 10 8 15 15 H 1.48498 * 109.47381 * 329.99803 * 12 10 8 16 16 C 1.34776 * 119.99921 * 90.00035 * 7 6 5 17 17 O 1.21288 * 120.00078 * 127.76289 * 16 7 6 18 18 C 1.50705 * 119.99593 * 307.75526 * 16 7 6 19 19 H 1.08994 * 109.46963 * 52.76169 * 18 16 7 20 20 C 1.52995 * 109.47663 * 292.75506 * 18 16 7 21 21 O 1.42904 * 109.46618 * 172.75754 * 18 16 7 22 22 C 1.35948 * 116.99810 * 210.61747 * 21 18 16 23 23 C 1.38711 * 120.03237 * 85.02617 * 22 21 18 24 24 C 1.38149 * 119.96611 * 180.29735 * 23 22 21 25 25 C 1.38452 * 120.03135 * 359.45164 * 24 23 22 26 26 F 1.35102 * 119.96814 * 180.27864 * 25 24 23 27 27 C 1.38449 * 120.06194 * 0.24963 * 25 24 23 28 28 C 1.38156 * 120.03044 * 0.02763 * 27 25 24 29 29 H 1.08994 * 109.47370 * 300.00110 * 1 2 3 30 30 H 1.09007 * 109.46852 * 60.00482 * 1 2 3 31 31 H 1.08996 * 109.46666 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47772 * 59.99944 * 5 3 2 33 33 H 1.09001 * 109.47226 * 299.99561 * 5 3 2 34 34 H 1.09007 * 109.47147 * 59.99774 * 6 5 3 35 35 H 1.09002 * 109.47131 * 299.99683 * 6 5 3 36 36 H 0.96993 * 120.00123 * 185.01315 * 11 10 8 37 37 H 1.08999 * 109.47701 * 173.45175 * 20 18 16 38 38 H 1.09005 * 109.47330 * 293.45622 * 20 18 16 39 39 H 1.08998 * 109.47065 * 53.45077 * 20 18 16 40 40 H 1.07997 * 120.01566 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.98143 * 179.72830 * 24 23 22 42 42 H 1.08005 * 119.98479 * 180.02562 * 27 25 24 43 43 H 1.08002 * 120.01179 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4630 2.8190 0.0010 8 6 6.1465 2.8558 1.1889 9 1 5.6284 3.1073 2.1025 10 6 7.5059 2.5696 1.2173 11 7 8.0703 1.9586 0.1999 12 14 8.5313 3.0533 2.7019 13 1 8.5299 1.9427 3.6877 14 1 9.9252 3.3313 2.2715 15 1 7.9543 4.2706 3.3268 16 6 6.1369 2.8534 -1.1657 17 8 6.9527 3.7276 -1.3692 18 6 5.8770 1.8056 -2.2171 19 1 4.8080 1.7557 -2.4238 20 6 6.3631 0.4453 -1.7129 21 8 6.5781 2.1481 -3.4143 22 6 6.0188 1.7574 -4.5903 23 6 5.0525 2.5473 -5.1957 24 6 4.4807 2.1460 -6.3875 25 6 4.8798 0.9618 -6.9834 26 9 4.3237 0.5734 -8.1519 27 6 5.8486 0.1755 -6.3834 28 6 6.4181 0.5715 -5.1886 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 3.9564 0.7808 -0.8891 33 1 3.9556 0.7811 0.8909 34 1 3.6099 3.2369 0.8893 35 1 3.6107 3.2357 -0.8907 36 1 9.0020 1.6938 0.2493 37 1 6.0714 -0.3302 -2.4211 38 1 7.4488 0.4602 -1.6170 39 1 5.9154 0.2369 -0.7412 40 1 4.7443 3.4733 -4.7333 41 1 3.7251 2.7586 -6.8568 42 1 6.1593 -0.7479 -6.8496 43 1 7.1741 -0.0419 -4.7210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:22 Heat of formation + Delta-G solvation = -169.499219 kcal Electronic energy + Delta-G solvation = -30218.426745 eV Core-core repulsion = 25758.413866 eV Total energy + Delta-G solvation = -4460.012879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89828 -41.56645 -41.13222 -40.08066 -38.02734 -37.58840 -36.44462 -34.21477 -32.56276 -32.19847 -31.81299 -30.02209 -28.59010 -27.07562 -25.52565 -24.60226 -24.03561 -23.09001 -21.79120 -21.03591 -19.29068 -18.80600 -18.61773 -18.37519 -17.69054 -17.59950 -17.55943 -17.04097 -16.80938 -16.55491 -16.20208 -15.74701 -15.52602 -15.14685 -14.99308 -14.87033 -14.56393 -14.49322 -14.07778 -13.83991 -13.77376 -13.64011 -13.33453 -13.11406 -13.01247 -12.93460 -12.80617 -12.64460 -12.52547 -12.38733 -12.19701 -12.09856 -11.95192 -11.73485 -11.52945 -11.07012 -10.96701 -10.18304 -10.15890 -9.50008 -9.31254 -8.18784 -5.65865 -0.05109 0.17312 1.18679 1.41831 1.51013 1.57126 1.75230 1.96970 2.18924 2.43693 2.74474 3.22623 3.27193 3.32378 3.75751 3.86363 3.88058 3.90463 3.99124 4.09096 4.20283 4.25798 4.35627 4.38208 4.38963 4.48426 4.52313 4.56856 4.75508 4.83009 4.89300 4.94811 5.04143 5.05606 5.06500 5.09643 5.39600 5.41984 5.51448 5.64067 5.70539 6.08331 6.58731 6.74494 6.99729 7.34763 7.64048 8.08572 8.92028 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008093 B = 0.004521 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.898468 B = 6191.591354 C = 8843.340364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.129 4.129 6 C 0.141 3.859 7 N -0.531 5.531 8 C -0.322 4.322 9 H 0.093 0.907 10 C -0.013 4.013 11 N -0.883 5.883 12 Si 0.977 3.023 13 H -0.266 1.266 14 H -0.299 1.299 15 H -0.274 1.274 16 C 0.549 3.451 17 O -0.562 6.562 18 C 0.093 3.907 19 H 0.081 0.919 20 C -0.133 4.133 21 O -0.336 6.336 22 C 0.070 3.930 23 C -0.124 4.124 24 C -0.131 4.131 25 C 0.079 3.921 26 F -0.141 7.141 27 C -0.129 4.129 28 C -0.109 4.109 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.135 0.865 41 H 0.161 0.839 42 H 0.166 0.834 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.908 -9.326 -8.177 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.318 3.682 4 O -0.426 6.426 5 C -0.169 4.169 6 C 0.017 3.983 7 N -0.259 5.259 8 C -0.448 4.448 9 H 0.111 0.889 10 C -0.215 4.215 11 N -0.523 5.523 12 Si 0.804 3.196 13 H -0.191 1.191 14 H -0.226 1.226 15 H -0.199 1.199 16 C 0.339 3.661 17 O -0.438 6.438 18 C 0.034 3.966 19 H 0.098 0.902 20 C -0.191 4.191 21 O -0.253 6.253 22 C 0.026 3.974 23 C -0.143 4.143 24 C -0.150 4.150 25 C 0.060 3.940 26 F -0.119 7.119 27 C -0.147 4.147 28 C -0.127 4.127 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.153 0.847 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.360 -8.479 -8.381 16.468 hybrid contribution 0.454 0.359 0.691 0.901 sum -10.906 -8.120 -7.690 15.621 Atomic orbital electron populations 1.23559 0.74876 1.05672 1.02558 1.86532 1.25026 1.32767 1.83696 1.23906 0.92060 0.81227 0.71019 1.90642 1.67844 1.37201 1.46926 1.22163 0.86458 1.01157 1.07098 1.21128 0.80847 0.93749 1.02594 1.42994 1.03802 1.75026 1.04034 1.19576 0.92372 1.46727 0.86155 0.88902 1.25752 0.98558 0.96773 1.00409 1.69587 1.13049 1.37347 1.32337 0.85156 0.77155 0.78822 0.78510 1.19141 1.22616 1.19859 1.19726 0.80234 0.84047 0.82097 1.90412 1.37543 1.37143 1.78717 1.22390 0.95316 0.95825 0.83099 0.90171 1.21949 1.03254 0.92792 1.01074 1.86210 1.48862 1.78468 1.11797 1.19242 0.95522 0.94362 0.88264 1.21451 0.95984 1.00514 0.96317 1.21182 1.01916 0.96194 0.95713 1.17799 0.96659 0.95716 0.83808 1.91493 1.84214 1.90977 1.45266 1.21249 0.96419 1.01492 0.95571 1.21436 1.00469 0.94849 0.95959 0.91974 0.91887 0.85042 0.87132 0.86328 0.90480 0.91809 0.92698 0.90897 0.92269 0.90879 0.84713 0.82174 0.81643 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.80 10.57 -51.47 -0.54 -9.35 16 3 C 0.47 13.52 7.96 71.23 0.57 14.09 16 4 O -0.54 -17.72 15.73 21.95 0.35 -17.38 16 5 C -0.13 -3.89 5.45 29.85 0.16 -3.72 16 6 C 0.14 5.23 4.46 86.38 0.39 5.61 16 7 N -0.53 -24.85 2.53 -635.52 -1.61 -26.46 16 8 C -0.32 -16.34 9.59 84.04 0.81 -15.53 16 9 H 0.09 4.46 7.87 -2.91 -0.02 4.44 16 10 C -0.01 -0.68 4.93 84.93 0.42 -0.26 16 11 N -0.88 -48.42 9.09 21.66 0.20 -48.22 16 12 Si 0.98 43.31 29.59 68.60 2.03 45.34 16 13 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 C 0.55 27.52 4.03 87.66 0.35 27.87 16 17 O -0.56 -34.02 15.91 15.88 0.25 -33.77 16 18 C 0.09 3.73 2.39 29.85 0.07 3.80 16 19 H 0.08 2.77 6.51 -2.39 -0.02 2.75 16 20 C -0.13 -4.93 8.18 71.98 0.59 -4.35 16 21 O -0.34 -13.96 9.25 -74.03 -0.68 -14.65 16 22 C 0.07 2.23 5.56 22.49 0.12 2.36 16 23 C -0.12 -3.44 9.99 22.36 0.22 -3.22 16 24 C -0.13 -2.95 10.02 22.30 0.22 -2.73 16 25 C 0.08 1.76 7.30 22.37 0.16 1.93 16 26 F -0.14 -3.08 17.27 44.97 0.78 -2.31 16 27 C -0.13 -2.72 10.02 22.30 0.22 -2.49 16 28 C -0.11 -2.81 9.99 22.36 0.22 -2.59 16 29 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 31 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 3.13 4.88 -2.39 -0.01 3.12 16 33 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.08 2.84 7.98 -2.38 -0.02 2.82 16 35 H 0.06 2.28 7.99 -2.39 -0.02 2.26 16 36 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 2.58 7.13 -2.38 -0.02 2.56 16 39 H 0.07 2.74 6.76 -2.39 -0.02 2.73 16 40 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 41 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -71.03 372.00 7.53 -63.50 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.04 Total: 20.88 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 5.73 Total: 22.42 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.41 Total: -74.69 kcal Atomic # 8 Polarization: -74.51 SS G_CDS: -0.63 Total: -75.14 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -71.03 7.53 -63.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.000 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds