Wall clock time and date at job start Tue Mar 31 2020 22:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00068 * 2 1 4 4 O 1.20831 * 119.99827 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00139 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47240 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47130 * 186.27606 * 6 5 3 8 8 C 1.37098 * 120.00195 * 284.44205 * 7 6 5 9 9 H 1.08000 * 119.99889 * 319.61238 * 8 7 6 10 10 C 1.38952 * 119.99898 * 139.60131 * 8 7 6 11 11 N 1.31405 * 120.00127 * 345.93076 * 10 8 7 12 12 Si 1.86802 * 119.99814 * 165.92850 * 10 8 7 13 13 H 1.48501 * 109.46910 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47111 * 119.99981 * 12 10 8 15 15 H 1.48498 * 109.47275 * 240.00489 * 12 10 8 16 16 C 1.34781 * 120.00199 * 104.44096 * 7 6 5 17 17 O 1.21290 * 120.00187 * 179.02204 * 16 7 6 18 18 C 1.50702 * 119.99494 * 359.30191 * 16 7 6 19 19 H 1.08998 * 109.47341 * 46.92217 * 18 16 7 20 20 C 1.52997 * 109.47100 * 286.91433 * 18 16 7 21 21 O 1.42910 * 109.46890 * 166.91763 * 18 16 7 22 22 C 1.35959 * 116.99678 * 275.23794 * 21 18 16 23 23 C 1.38656 * 120.06623 * 5.34190 * 22 21 18 24 24 C 1.38180 * 119.97054 * 179.72253 * 23 22 21 25 25 C 1.38267 * 120.09234 * 0.54881 * 24 23 22 26 26 C 1.38250 * 120.12490 * 359.71929 * 25 24 23 27 27 C 1.38330 * 120.03348 * 0.02562 * 26 25 24 28 28 F 1.35102 * 120.04920 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47401 * 300.00348 * 1 2 3 30 30 H 1.09002 * 109.46560 * 60.00116 * 1 2 3 31 31 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47350 * 59.99529 * 5 3 2 33 33 H 1.09004 * 109.47423 * 299.99825 * 5 3 2 34 34 H 1.09002 * 109.47037 * 66.27424 * 6 5 3 35 35 H 1.09005 * 109.46628 * 306.27322 * 6 5 3 36 36 H 0.97001 * 119.99795 * 185.02135 * 11 10 8 37 37 H 1.08995 * 109.46718 * 76.15467 * 20 18 16 38 38 H 1.09003 * 109.47184 * 196.14765 * 20 18 16 39 39 H 1.08991 * 109.47357 * 316.15286 * 20 18 16 40 40 H 1.08005 * 120.01534 * 359.96799 * 23 22 21 41 41 H 1.08001 * 119.95750 * 180.27152 * 24 23 22 42 42 H 1.07999 * 119.93487 * 179.75103 * 25 24 23 43 43 H 1.08008 * 119.98393 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4552 2.8211 -0.1506 8 6 6.2711 2.5275 0.9113 9 1 6.0064 2.8607 1.9040 10 6 7.4385 1.8012 0.7106 11 7 7.6282 1.1621 -0.4218 12 14 8.7383 1.7332 2.0505 13 1 8.2866 2.5304 3.2191 14 1 8.9483 0.3229 2.4654 15 1 10.0130 2.2920 1.5325 16 6 5.9919 3.1822 -1.3330 17 8 7.1961 3.2647 -1.4526 18 6 5.0955 3.4895 -2.5048 19 1 4.2902 4.1498 -2.1829 20 6 4.5020 2.1882 -3.0480 21 8 5.8559 4.1310 -3.5308 22 6 6.0156 5.4774 -3.4303 23 6 5.5486 6.1508 -2.3118 24 6 5.7171 7.5184 -2.2091 25 6 6.3407 8.2184 -3.2254 26 6 6.8029 7.5517 -4.3449 27 6 6.6417 6.1819 -4.4507 28 9 7.0937 5.5300 -5.5444 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7810 0.8908 34 1 3.7062 3.2084 0.9402 35 1 3.5204 3.2624 -0.8293 36 1 8.4080 0.5964 -0.5347 37 1 3.7059 1.8478 -2.3858 38 1 4.0960 2.3621 -4.0446 39 1 5.2809 1.4277 -3.1006 40 1 5.0569 5.6060 -1.5194 41 1 5.3571 8.0421 -1.3358 42 1 6.4675 9.2878 -3.1443 43 1 7.2894 8.1008 -5.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:30 Heat of formation + Delta-G solvation = -151.094446 kcal Electronic energy + Delta-G solvation = -30602.065263 eV Core-core repulsion = 26142.850475 eV Total energy + Delta-G solvation = -4459.214789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.46194 -40.38355 -39.99956 -38.36748 -36.92719 -36.38798 -34.54126 -32.62327 -31.28407 -30.50259 -30.34022 -29.13991 -27.59693 -25.47417 -24.14557 -23.45373 -22.25583 -21.93036 -20.52517 -19.46314 -18.09507 -17.54506 -17.13943 -16.72925 -16.48053 -16.38923 -16.26082 -15.67008 -15.25687 -15.04114 -14.74139 -14.36746 -14.11504 -14.06353 -13.68221 -13.51408 -13.21801 -13.05148 -12.75080 -12.60680 -12.42718 -12.14767 -11.89554 -11.77501 -11.63288 -11.61389 -11.37842 -11.12067 -10.97409 -10.93275 -10.80640 -10.73096 -10.56672 -10.40210 -10.31646 -10.16071 -8.94716 -8.73799 -8.27545 -7.76808 -7.19861 -6.16061 -3.95970 1.32873 1.50631 2.38897 2.85141 3.25549 3.34248 3.37514 3.38196 3.79601 4.06068 4.25845 4.49360 4.74723 4.90543 5.02152 5.06527 5.07947 5.13852 5.15237 5.20936 5.36888 5.42398 5.42600 5.48451 5.50302 5.59473 5.70918 5.73328 5.89725 5.97263 6.10786 6.19269 6.23826 6.28157 6.37341 6.41246 6.50785 6.56802 6.64874 6.87234 7.51829 7.63194 7.90192 8.14901 8.91820 9.04853 9.52780 10.15879 10.91032 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008577 B = 0.004647 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.791444 B = 6024.241955 C = 8048.620914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.516 6.516 5 C -0.128 4.128 6 C 0.117 3.883 7 N -0.452 5.452 8 C -0.350 4.350 9 H 0.083 0.917 10 C 0.065 3.935 11 N -0.821 5.821 12 Si 0.913 3.087 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.282 1.282 16 C 0.451 3.549 17 O -0.495 6.495 18 C 0.065 3.935 19 H 0.079 0.921 20 C -0.143 4.143 21 O -0.279 6.279 22 C 0.120 3.880 23 C -0.177 4.177 24 C -0.087 4.087 25 C -0.142 4.142 26 C -0.120 4.120 27 C 0.060 3.940 28 F -0.136 7.136 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.264 0.736 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 4.534 -2.940 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.404 6.404 5 C -0.167 4.167 6 C -0.008 4.008 7 N -0.176 5.176 8 C -0.476 4.476 9 H 0.100 0.900 10 C -0.146 4.146 11 N -0.455 5.455 12 Si 0.740 3.260 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.208 1.208 16 C 0.236 3.764 17 O -0.369 6.369 18 C 0.005 3.995 19 H 0.096 0.904 20 C -0.201 4.201 21 O -0.191 6.191 22 C 0.073 3.927 23 C -0.196 4.196 24 C -0.105 4.105 25 C -0.160 4.160 26 C -0.139 4.139 27 C 0.040 3.960 28 F -0.114 7.114 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.279 4.639 -3.345 11.763 hybrid contribution 0.364 -0.392 0.691 0.873 sum -9.916 4.248 -2.654 11.109 Atomic orbital electron populations 1.23204 0.77141 1.03301 1.02315 1.86572 1.22882 1.34126 1.84224 1.24294 0.92574 0.80967 0.71436 1.90630 1.67505 1.36301 1.45949 1.22068 0.85018 1.02366 1.07267 1.21371 0.84873 0.92468 1.02100 1.43306 1.02263 1.61381 1.10679 1.19087 1.04012 1.36499 0.88036 0.89964 1.25224 0.98685 0.94545 0.96182 1.69851 1.27709 1.24120 1.23776 0.86130 0.81629 0.77476 0.80773 1.19596 1.21102 1.20754 1.20050 0.89014 0.83509 0.83838 1.90598 1.14249 1.50528 1.81545 1.22590 0.92874 0.95245 0.88828 0.90355 1.21887 1.01298 0.95560 1.01326 1.86181 1.69852 1.16092 1.46989 1.19061 0.96009 0.83983 0.93639 1.21244 1.04878 0.95681 0.97770 1.20979 0.97668 0.93306 0.98565 1.20813 1.01312 1.00025 0.93856 1.20910 1.01653 0.91380 0.99940 1.16972 1.04087 0.90089 0.84871 1.91475 1.87283 1.81511 1.51172 0.92105 0.92099 0.88466 0.87264 0.86492 0.91233 0.91511 0.92562 0.90536 0.91584 0.90270 0.84515 0.85286 0.85269 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.94 10.57 -39.26 -0.41 -5.36 16 3 C 0.46 7.07 7.96 36.00 0.29 7.36 16 4 O -0.52 -8.64 15.64 -18.75 -0.29 -8.94 16 5 C -0.13 -2.11 5.26 -27.88 -0.15 -2.26 16 6 C 0.12 2.13 4.27 -4.04 -0.02 2.11 16 7 N -0.45 -10.38 2.59 -114.81 -0.30 -10.67 16 8 C -0.35 -8.91 9.18 -14.93 -0.14 -9.05 16 9 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 10 C 0.06 1.73 4.53 -17.47 -0.08 1.65 16 11 N -0.82 -23.19 11.06 55.50 0.61 -22.58 16 12 Si 0.91 21.13 29.58 -169.99 -5.03 16.10 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 C 0.45 10.92 5.24 -10.98 -0.06 10.87 16 17 O -0.50 -14.53 13.79 -14.03 -0.19 -14.73 16 18 C 0.06 1.28 1.82 -27.88 -0.05 1.23 16 19 H 0.08 1.36 4.92 -51.93 -0.26 1.11 16 20 C -0.14 -2.48 9.02 37.16 0.34 -2.14 16 21 O -0.28 -5.97 9.24 -39.18 -0.36 -6.33 16 22 C 0.12 2.33 6.59 -39.18 -0.26 2.07 16 23 C -0.18 -3.05 8.71 -39.45 -0.34 -3.39 16 24 C -0.09 -1.22 10.04 -39.59 -0.40 -1.62 16 25 C -0.14 -1.80 10.04 -39.57 -0.40 -2.20 16 26 C -0.12 -1.68 10.02 -39.54 -0.40 -2.08 16 27 C 0.06 1.06 7.31 -39.30 -0.29 0.77 16 28 F -0.14 -2.54 17.11 2.25 0.04 -2.50 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 1.85 6.47 -51.93 -0.34 1.51 16 33 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.12 4.91 -51.93 -0.26 0.86 16 36 H 0.26 7.25 8.32 -40.82 -0.34 6.91 16 37 H 0.08 1.18 4.79 -51.93 -0.25 0.93 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 40 H 0.14 2.39 5.69 -52.48 -0.30 2.09 16 41 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -33.85 365.45 -6.47 -40.32 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.16 Total: 4.45 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -0.88 Total: 4.73 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.32 Total: -33.25 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.26 Total: -35.35 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.85 -6.47 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.773 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds