Wall clock time and date at job start Tue Mar 31 2020 22:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00068 * 2 1 4 4 O 1.20831 * 119.99827 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00139 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47240 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47130 * 186.27606 * 6 5 3 8 8 C 1.37098 * 120.00195 * 284.44205 * 7 6 5 9 9 H 1.08000 * 119.99889 * 319.61238 * 8 7 6 10 10 C 1.38952 * 119.99898 * 139.60131 * 8 7 6 11 11 N 1.31405 * 120.00127 * 345.93076 * 10 8 7 12 12 Si 1.86802 * 119.99814 * 165.92850 * 10 8 7 13 13 H 1.48501 * 109.46910 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47111 * 119.99981 * 12 10 8 15 15 H 1.48498 * 109.47275 * 240.00489 * 12 10 8 16 16 C 1.34781 * 120.00199 * 104.44096 * 7 6 5 17 17 O 1.21290 * 120.00187 * 179.02204 * 16 7 6 18 18 C 1.50702 * 119.99494 * 359.30191 * 16 7 6 19 19 H 1.08998 * 109.47341 * 46.92217 * 18 16 7 20 20 C 1.52997 * 109.47100 * 286.91433 * 18 16 7 21 21 O 1.42910 * 109.46890 * 166.91763 * 18 16 7 22 22 C 1.35959 * 116.99678 * 275.23794 * 21 18 16 23 23 C 1.38656 * 120.06623 * 5.34190 * 22 21 18 24 24 C 1.38180 * 119.97054 * 179.72253 * 23 22 21 25 25 C 1.38267 * 120.09234 * 0.54881 * 24 23 22 26 26 C 1.38250 * 120.12490 * 359.71929 * 25 24 23 27 27 C 1.38330 * 120.03348 * 0.02562 * 26 25 24 28 28 F 1.35102 * 120.04920 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47401 * 300.00348 * 1 2 3 30 30 H 1.09002 * 109.46560 * 60.00116 * 1 2 3 31 31 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47350 * 59.99529 * 5 3 2 33 33 H 1.09004 * 109.47423 * 299.99825 * 5 3 2 34 34 H 1.09002 * 109.47037 * 66.27424 * 6 5 3 35 35 H 1.09005 * 109.46628 * 306.27322 * 6 5 3 36 36 H 0.97001 * 119.99795 * 185.02135 * 11 10 8 37 37 H 1.08995 * 109.46718 * 76.15467 * 20 18 16 38 38 H 1.09003 * 109.47184 * 196.14765 * 20 18 16 39 39 H 1.08991 * 109.47357 * 316.15286 * 20 18 16 40 40 H 1.08005 * 120.01534 * 359.96799 * 23 22 21 41 41 H 1.08001 * 119.95750 * 180.27152 * 24 23 22 42 42 H 1.07999 * 119.93487 * 179.75103 * 25 24 23 43 43 H 1.08008 * 119.98393 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4552 2.8211 -0.1506 8 6 6.2711 2.5275 0.9113 9 1 6.0064 2.8607 1.9040 10 6 7.4385 1.8012 0.7106 11 7 7.6282 1.1621 -0.4218 12 14 8.7383 1.7332 2.0505 13 1 8.2866 2.5304 3.2191 14 1 8.9483 0.3229 2.4654 15 1 10.0130 2.2920 1.5325 16 6 5.9919 3.1822 -1.3330 17 8 7.1961 3.2647 -1.4526 18 6 5.0955 3.4895 -2.5048 19 1 4.2902 4.1498 -2.1829 20 6 4.5020 2.1882 -3.0480 21 8 5.8559 4.1310 -3.5308 22 6 6.0156 5.4774 -3.4303 23 6 5.5486 6.1508 -2.3118 24 6 5.7171 7.5184 -2.2091 25 6 6.3407 8.2184 -3.2254 26 6 6.8029 7.5517 -4.3449 27 6 6.6417 6.1819 -4.4507 28 9 7.0937 5.5300 -5.5444 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7810 0.8908 34 1 3.7062 3.2084 0.9402 35 1 3.5204 3.2624 -0.8293 36 1 8.4080 0.5964 -0.5347 37 1 3.7059 1.8478 -2.3858 38 1 4.0960 2.3621 -4.0446 39 1 5.2809 1.4277 -3.1006 40 1 5.0569 5.6060 -1.5194 41 1 5.3571 8.0421 -1.3358 42 1 6.4675 9.2878 -3.1443 43 1 7.2894 8.1008 -5.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:29 Heat of formation + Delta-G solvation = -170.948401 kcal Electronic energy + Delta-G solvation = -30602.926196 eV Core-core repulsion = 26142.850475 eV Total energy + Delta-G solvation = -4460.075721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.82483 -41.73357 -41.33615 -39.90911 -38.31266 -37.60255 -36.33228 -34.43866 -32.82896 -31.94689 -31.66552 -30.42308 -28.58047 -27.27983 -25.60188 -24.90793 -23.50220 -23.37528 -21.79564 -21.09599 -19.50086 -18.89903 -18.81967 -18.05508 -17.74055 -17.59890 -17.58753 -17.19218 -16.78959 -16.59130 -16.23841 -15.73118 -15.57527 -15.38580 -15.23409 -15.02929 -14.67945 -14.32683 -13.97856 -13.94422 -13.82361 -13.50751 -13.43484 -13.19208 -12.96295 -12.88205 -12.84003 -12.66794 -12.60158 -12.53717 -12.38222 -12.21746 -12.01231 -11.83638 -11.73132 -11.54063 -10.89639 -10.08032 -9.92672 -9.27292 -9.04932 -8.16809 -5.98334 0.13111 0.29460 1.16557 1.39103 1.46097 1.53713 1.70870 1.98586 2.27128 2.42367 2.60994 3.02626 3.25236 3.26340 3.66834 3.75383 3.77817 3.90936 3.98476 4.04880 4.12582 4.23620 4.26766 4.32931 4.35856 4.38758 4.41277 4.51656 4.62347 4.70952 4.75195 4.85037 4.95003 5.00905 5.09370 5.17843 5.26207 5.38909 5.41941 5.50060 5.71810 6.14335 6.27317 6.72671 6.98217 7.16845 7.60948 8.29706 8.90166 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008577 B = 0.004647 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.791444 B = 6024.241955 C = 8048.620914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.477 3.523 4 O -0.530 6.530 5 C -0.121 4.121 6 C 0.118 3.882 7 N -0.459 5.459 8 C -0.356 4.356 9 H 0.090 0.910 10 C 0.016 3.984 11 N -0.855 5.855 12 Si 0.968 3.032 13 H -0.254 1.254 14 H -0.274 1.274 15 H -0.302 1.302 16 C 0.445 3.555 17 O -0.558 6.558 18 C 0.072 3.928 19 H 0.103 0.897 20 C -0.136 4.136 21 O -0.308 6.308 22 C 0.081 3.919 23 C -0.194 4.194 24 C -0.083 4.083 25 C -0.124 4.124 26 C -0.111 4.111 27 C 0.028 3.972 28 F -0.151 7.151 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.256 0.744 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.127 0.873 41 H 0.162 0.838 42 H 0.177 0.823 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 6.401 -2.226 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.321 3.679 4 O -0.420 6.420 5 C -0.160 4.160 6 C -0.006 4.006 7 N -0.182 5.182 8 C -0.483 4.483 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.491 5.491 12 Si 0.794 3.206 13 H -0.178 1.178 14 H -0.199 1.199 15 H -0.230 1.230 16 C 0.233 3.767 17 O -0.436 6.436 18 C 0.013 3.987 19 H 0.121 0.879 20 C -0.193 4.193 21 O -0.221 6.221 22 C 0.035 3.965 23 C -0.213 4.213 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.129 4.129 27 C 0.008 3.992 28 F -0.130 7.130 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.144 0.856 41 H 0.179 0.821 42 H 0.194 0.806 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.244 6.495 -2.599 14.101 hybrid contribution 0.851 -0.850 0.486 1.297 sum -11.393 5.645 -2.113 12.889 Atomic orbital electron populations 1.23575 0.74664 1.05661 1.02756 1.86538 1.25212 1.32857 1.83667 1.23738 0.91756 0.81297 0.71155 1.90628 1.67664 1.36857 1.46815 1.21798 0.86557 1.00803 1.06840 1.21453 0.81966 0.94017 1.03184 1.43457 1.04118 1.60603 1.10010 1.19397 1.04498 1.35519 0.88927 0.89227 1.25987 1.00572 0.94632 0.97880 1.69985 1.27893 1.25460 1.25735 0.85274 0.78340 0.78012 0.79015 1.17787 1.19942 1.22986 1.20784 0.88869 0.82061 0.85002 1.90548 1.17026 1.53158 1.82864 1.22531 0.92285 0.96639 0.87278 0.87947 1.21870 1.00725 0.93565 1.03169 1.86132 1.70830 1.17756 1.47350 1.19491 0.98251 0.83389 0.95392 1.21334 1.05714 0.97277 0.96999 1.21437 0.96675 0.92005 0.99990 1.21376 0.98602 1.02098 0.92130 1.21381 1.00532 0.89752 1.01256 1.17500 1.05353 0.91640 0.84662 1.91424 1.87628 1.82112 1.51797 0.91734 0.91627 0.85257 0.87871 0.87001 0.90403 0.89920 0.93422 0.88652 0.89117 0.93156 0.85564 0.82085 0.80590 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.37 -9.31 10.57 -51.44 -0.54 -9.85 16 3 C 0.48 13.81 7.96 71.23 0.57 14.38 16 4 O -0.53 -16.76 15.64 21.95 0.34 -16.42 16 5 C -0.12 -3.94 5.26 29.85 0.16 -3.78 16 6 C 0.12 4.22 4.27 86.38 0.37 4.59 16 7 N -0.46 -21.41 2.59 -635.52 -1.65 -23.06 16 8 C -0.36 -18.41 9.18 84.04 0.77 -17.64 16 9 H 0.09 4.39 7.87 -2.91 -0.02 4.37 16 10 C 0.02 0.90 4.53 84.93 0.38 1.28 16 11 N -0.86 -50.45 11.06 21.66 0.24 -50.21 16 12 Si 0.97 44.26 29.58 68.60 2.03 46.29 16 13 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 16 C 0.45 22.36 5.24 87.66 0.46 22.81 16 17 O -0.56 -34.39 13.79 15.66 0.22 -34.17 16 18 C 0.07 2.94 1.82 29.85 0.05 2.99 16 19 H 0.10 3.57 4.92 -2.39 -0.01 3.56 16 20 C -0.14 -4.77 9.02 71.98 0.65 -4.12 16 21 O -0.31 -13.73 9.24 -74.37 -0.69 -14.42 16 22 C 0.08 3.20 6.59 22.53 0.15 3.35 16 23 C -0.19 -6.65 8.71 22.36 0.19 -6.45 16 24 C -0.08 -2.11 10.04 22.26 0.22 -1.88 16 25 C -0.12 -2.66 10.04 22.28 0.22 -2.44 16 26 C -0.11 -2.84 10.02 22.29 0.22 -2.62 16 27 C 0.03 1.00 7.31 22.45 0.16 1.17 16 28 F -0.15 -5.82 17.11 44.97 0.77 -5.05 16 29 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.13 1.39 8.14 -2.39 -0.02 1.38 16 32 H 0.10 3.50 6.47 -2.39 -0.02 3.49 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.08 2.68 4.91 -2.38 -0.01 2.67 16 36 H 0.26 14.81 8.32 -92.71 -0.77 14.03 16 37 H 0.10 2.89 4.79 -2.39 -0.01 2.88 16 38 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.05 2.04 8.03 -2.39 -0.02 2.03 16 40 H 0.13 4.45 5.69 -2.91 -0.02 4.43 16 41 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 42 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -78.22 365.45 7.56 -70.66 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 1.05 Total: 22.94 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.79 Total: 13.30 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -1.41 Total: -73.28 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: -0.67 Total: -74.86 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.77 Total: -5.05 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -78.22 7.56 -70.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.284 kcal (2) G-P(sol) polarization free energy of solvation -78.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds