Wall clock time and date at job start Tue Mar 31 2020 23:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99827 * 2 1 4 4 O 1.20826 * 120.00089 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47057 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.47154 * 178.57231 * 6 5 3 8 8 C 1.37096 * 120.00033 * 95.85002 * 7 6 5 9 9 H 1.08004 * 119.99725 * 213.81751 * 8 7 6 10 10 C 1.38945 * 120.00095 * 33.82643 * 8 7 6 11 11 N 1.31411 * 119.99685 * 214.63969 * 10 8 7 12 12 Si 1.86793 * 120.00188 * 34.63675 * 10 8 7 13 13 H 1.48499 * 109.47484 * 95.61270 * 12 10 8 14 14 H 1.48500 * 109.47278 * 215.61347 * 12 10 8 15 15 H 1.48507 * 109.47280 * 335.61013 * 12 10 8 16 16 C 1.34778 * 119.99846 * 276.13123 * 7 6 5 17 17 O 1.21297 * 119.99762 * 359.71640 * 16 7 6 18 18 C 1.50698 * 119.99982 * 179.72549 * 16 7 6 19 19 C 1.50706 * 109.47036 * 179.97438 * 18 16 7 20 20 C 1.38255 * 119.93606 * 269.72725 * 19 18 16 21 21 C 1.38184 * 120.09300 * 179.72718 * 20 19 18 22 22 C 1.38656 * 119.97062 * 0.54200 * 21 20 19 23 23 O 1.35958 * 120.06504 * 179.70344 * 22 21 20 24 24 C 1.42901 * 117.00049 * 0.02704 * 23 22 21 25 25 C 1.38909 * 119.87198 * 359.73079 * 22 21 20 26 26 F 1.35104 * 120.04410 * 180.02562 * 25 22 21 27 27 C 1.38261 * 119.93424 * 89.99612 * 19 18 16 28 28 H 1.09007 * 109.47316 * 300.00464 * 1 2 3 29 29 H 1.08997 * 109.47030 * 60.00108 * 1 2 3 30 30 H 1.08998 * 109.47543 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47291 * 59.99567 * 5 3 2 32 32 H 1.08997 * 109.46837 * 299.99547 * 5 3 2 33 33 H 1.08998 * 109.47227 * 58.56764 * 6 5 3 34 34 H 1.09001 * 109.47183 * 298.57223 * 6 5 3 35 35 H 0.97004 * 119.99837 * 179.97438 * 11 10 8 36 36 H 1.08995 * 109.46880 * 299.99377 * 18 16 7 37 37 H 1.08997 * 109.47151 * 59.99929 * 18 16 7 38 38 H 1.07998 * 119.95195 * 359.97438 * 20 19 18 39 39 H 1.08003 * 120.01427 * 180.27727 * 21 20 19 40 40 H 1.09001 * 109.46945 * 59.99671 * 24 23 22 41 41 H 1.08991 * 109.47322 * 179.97438 * 24 23 22 42 42 H 1.09007 * 109.46949 * 300.00022 * 24 23 22 43 43 H 1.07997 * 119.98816 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4627 2.8190 0.0327 8 6 6.1685 2.9672 -1.1332 9 1 7.1397 2.5066 -1.2387 10 6 5.6345 3.7100 -2.1790 11 7 5.8676 3.3555 -3.4227 12 14 4.5853 5.2125 -1.8170 13 1 5.4316 6.4316 -1.8696 14 1 3.5039 5.3166 -2.8293 15 1 3.9863 5.0837 -0.4642 16 6 6.1147 2.7383 1.2096 17 8 5.4901 2.6073 2.2411 18 6 7.6195 2.8112 1.2438 19 6 8.0956 2.6982 2.6692 20 6 8.2587 3.8380 3.4345 21 6 8.6896 3.7379 4.7436 22 6 8.9697 2.4935 5.2873 23 8 9.3996 2.3932 6.5732 24 6 9.5400 3.6112 7.3073 25 6 8.8108 1.3496 4.5155 26 9 9.0822 0.1353 5.0419 27 6 8.3737 1.4554 3.2073 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 3.5895 3.2427 0.8758 34 1 3.6314 3.2297 -0.9036 35 1 5.4945 3.8739 -4.1528 36 1 8.0362 1.9938 0.6554 37 1 7.9468 3.7633 0.8262 38 1 8.0451 4.8078 3.0098 39 1 8.8123 4.6288 5.3417 40 1 8.5760 4.1172 7.3593 41 1 9.8885 3.3894 8.3159 42 1 10.2623 4.2560 6.8064 43 1 8.2493 0.5668 2.6062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:31 Heat of formation + Delta-G solvation = -183.176244 kcal Electronic energy + Delta-G solvation = -29301.209651 eV Core-core repulsion = 24840.603691 eV Total energy + Delta-G solvation = -4460.605960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.81156 -41.66011 -41.15420 -40.47029 -38.58221 -37.68786 -36.80694 -34.23559 -33.37862 -32.29912 -31.68549 -29.26819 -28.63526 -27.49570 -26.73786 -25.27390 -23.74803 -22.66835 -21.88942 -20.85782 -19.36540 -19.06345 -18.39735 -18.07692 -17.90823 -17.81354 -17.65215 -17.46040 -17.09390 -16.66291 -16.03299 -15.99510 -15.79142 -15.65697 -15.18848 -15.14968 -14.90138 -14.62267 -14.44085 -14.18223 -14.01631 -13.80942 -13.61236 -13.16274 -13.05601 -13.00096 -12.82236 -12.71130 -12.50372 -12.43242 -12.10695 -12.02564 -11.93061 -11.85443 -11.72824 -11.64548 -11.11067 -10.45986 -9.89334 -9.80380 -9.07851 -8.59266 -6.01754 0.17215 0.25269 1.06374 1.24146 1.37420 1.45863 1.60026 1.92815 2.21724 2.22928 2.47121 2.74931 3.04059 3.24190 3.70316 3.75101 3.81666 3.92060 4.06957 4.11105 4.28284 4.29547 4.30168 4.38787 4.40913 4.41232 4.47644 4.55056 4.61344 4.66513 4.71811 4.73946 4.88735 4.89820 4.99605 5.10970 5.18077 5.26670 5.36853 5.59091 5.67472 6.09340 6.26559 6.32227 6.62399 6.98806 7.46112 7.82400 8.53834 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.003306 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.697991 B = 8467.431213 C = 9968.187390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.540 6.540 5 C -0.118 4.118 6 C 0.131 3.869 7 N -0.466 5.466 8 C -0.357 4.357 9 H 0.103 0.897 10 C 0.055 3.945 11 N -0.863 5.863 12 Si 0.884 3.116 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.262 1.262 16 C 0.477 3.523 17 O -0.611 6.611 18 C -0.074 4.074 19 C -0.071 4.071 20 C -0.080 4.080 21 C -0.173 4.173 22 C 0.082 3.918 23 O -0.333 6.333 24 C 0.016 3.984 25 C 0.042 3.958 26 F -0.146 7.146 27 C -0.109 4.109 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.280 0.720 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.146 0.854 39 H 0.168 0.832 40 H 0.065 0.935 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 -1.079 11.754 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.156 4.156 6 C 0.007 3.993 7 N -0.186 5.186 8 C -0.483 4.483 9 H 0.121 0.879 10 C -0.153 4.153 11 N -0.497 5.497 12 Si 0.709 3.291 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.186 1.186 16 C 0.268 3.732 17 O -0.497 6.497 18 C -0.114 4.114 19 C -0.072 4.072 20 C -0.098 4.098 21 C -0.191 4.191 22 C 0.036 3.964 23 O -0.248 6.248 24 C -0.078 4.078 25 C 0.023 3.977 26 F -0.125 7.125 27 C -0.128 4.128 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.164 0.836 39 H 0.185 0.815 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.052 -1.047 12.157 12.374 hybrid contribution -0.873 0.819 -0.360 1.250 sum 1.180 -0.227 11.798 11.859 Atomic orbital electron populations 1.23600 0.74632 1.05935 1.02545 1.86514 1.25266 1.32294 1.83668 1.23819 0.92090 0.81354 0.70913 1.90627 1.67897 1.37391 1.47084 1.21680 0.86943 1.00213 1.06804 1.21235 0.82762 0.94197 1.01074 1.43773 1.03996 1.64572 1.06283 1.18947 1.05434 1.34175 0.89746 0.87934 1.25548 0.96956 0.98404 0.94356 1.69992 1.43367 1.36630 0.99760 0.86845 0.79542 0.83387 0.79324 1.19617 1.21115 1.18589 1.20884 0.90895 0.79232 0.82177 1.90577 1.70048 1.55456 1.33630 1.20383 0.91281 1.06410 0.93288 1.19346 0.99160 0.92627 0.96047 1.21168 0.96268 0.99101 0.93300 1.21337 1.04778 0.96149 0.96864 1.19070 0.98793 0.93354 0.85203 1.86087 1.81622 1.36039 1.21031 1.23432 1.02577 0.84935 0.96834 1.17126 1.08855 0.78877 0.92875 1.91433 1.92210 1.42079 1.86806 1.20940 0.99564 0.99434 0.92877 0.91960 0.91982 0.84499 0.86233 0.86981 0.92272 0.92002 0.91008 0.87452 0.86811 0.83596 0.81496 0.91621 0.86068 0.90901 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.36 -10.90 10.57 -51.45 -0.54 -11.44 16 3 C 0.47 17.17 7.96 71.24 0.57 17.73 16 4 O -0.54 -22.25 15.73 21.97 0.35 -21.91 16 5 C -0.12 -4.39 6.09 29.85 0.18 -4.21 16 6 C 0.13 5.74 2.83 86.38 0.24 5.98 16 7 N -0.47 -20.49 2.22 -635.53 -1.41 -21.91 16 8 C -0.36 -16.61 9.03 84.04 0.76 -15.85 16 9 H 0.10 4.83 7.09 -2.91 -0.02 4.80 16 10 C 0.06 2.70 5.01 84.93 0.43 3.12 16 11 N -0.86 -44.11 13.96 21.66 0.30 -43.81 16 12 Si 0.88 39.48 26.21 68.60 1.80 41.28 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 14 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.26 -11.98 5.86 99.48 0.58 -11.40 16 16 C 0.48 19.84 7.58 87.66 0.66 20.51 16 17 O -0.61 -28.22 15.72 -3.08 -0.05 -28.27 16 18 C -0.07 -2.48 4.48 29.10 0.13 -2.35 16 19 C -0.07 -2.22 4.37 -19.85 -0.09 -2.30 16 20 C -0.08 -2.19 9.69 22.26 0.22 -1.98 16 21 C -0.17 -4.19 9.04 22.36 0.20 -3.99 16 22 C 0.08 2.31 6.69 22.53 0.15 2.46 16 23 O -0.33 -8.53 10.36 -93.08 -0.96 -9.49 16 24 C 0.02 0.23 9.81 113.37 1.11 1.34 16 25 C 0.04 1.35 7.31 22.45 0.16 1.51 16 26 F -0.15 -4.86 17.11 44.97 0.77 -4.09 16 27 C -0.11 -3.43 9.67 22.30 0.22 -3.21 16 28 H 0.06 1.35 8.13 -2.38 -0.02 1.33 16 29 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 32 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.06 2.74 7.53 -2.39 -0.02 2.72 16 34 H 0.06 2.84 4.31 -2.39 -0.01 2.83 16 35 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 36 H 0.11 3.36 7.59 -2.39 -0.02 3.34 16 37 H 0.11 3.54 8.04 -2.39 -0.02 3.52 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.17 2.80 6.30 -2.91 -0.02 2.78 16 40 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 0.82 7.66 -2.38 -0.02 0.80 16 43 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -64.99 371.50 7.31 -57.68 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.92 Total: 21.42 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 6.14 Total: 20.53 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -1.11 Total: -65.72 kcal Atomic # 8 Polarization: -69.90 SS G_CDS: -1.21 Total: -71.11 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.77 Total: -4.09 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.80 Total: 41.28 kcal Total: -64.99 7.31 -57.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.493 kcal (2) G-P(sol) polarization free energy of solvation -64.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds