Wall clock time and date at job start Tue Mar 31 2020 22:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99987 * 2 1 4 4 O 1.20827 * 119.99986 * 0.02562 * 3 2 1 5 5 C 1.50691 * 119.99972 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47298 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47534 * 179.97438 * 6 5 3 8 8 C 1.37097 * 120.00447 * 270.00317 * 7 6 5 9 9 H 1.07997 * 119.99664 * 340.10201 * 8 7 6 10 10 C 1.38943 * 120.00453 * 160.09940 * 8 7 6 11 11 N 1.31420 * 120.00032 * 350.51988 * 10 8 7 12 12 Si 1.86799 * 120.00316 * 170.51836 * 10 8 7 13 13 H 1.48504 * 109.46876 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.47451 * 120.00179 * 12 10 8 15 15 H 1.48506 * 109.47309 * 240.00198 * 12 10 8 16 16 C 1.34777 * 119.99755 * 90.00126 * 7 6 5 17 17 O 1.21287 * 120.00413 * 127.51165 * 16 7 6 18 18 C 1.50699 * 120.00007 * 307.50443 * 16 7 6 19 19 H 1.09007 * 109.47203 * 54.73202 * 18 16 7 20 20 C 1.53003 * 109.47541 * 294.73049 * 18 16 7 21 21 O 1.42905 * 109.47370 * 174.72792 * 18 16 7 22 22 C 1.35893 * 116.99697 * 291.17301 * 21 18 16 23 23 C 1.38777 * 120.03693 * 178.52530 * 22 21 18 24 24 C 1.38136 * 119.99357 * 180.02562 * 23 22 21 25 25 C 1.38256 * 120.07948 * 0.27406 * 24 23 22 26 26 C 1.38485 * 120.08331 * 359.45357 * 25 24 23 27 27 F 1.35095 * 119.99727 * 180.27142 * 26 25 24 28 28 C 1.38388 * 120.00160 * 0.54417 * 26 25 24 29 29 H 1.09004 * 109.46818 * 60.00025 * 1 2 3 30 30 H 1.08999 * 109.47271 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47253 * 300.00376 * 1 2 3 32 32 H 1.09000 * 109.47370 * 60.00170 * 5 3 2 33 33 H 1.09007 * 109.47217 * 299.99861 * 5 3 2 34 34 H 1.08999 * 109.47175 * 60.00120 * 6 5 3 35 35 H 1.08995 * 109.47135 * 300.00461 * 6 5 3 36 36 H 0.96999 * 120.00071 * 185.00076 * 11 10 8 37 37 H 1.08990 * 109.47077 * 294.32295 * 20 18 16 38 38 H 1.09006 * 109.46457 * 54.32212 * 20 18 16 39 39 H 1.09003 * 109.47234 * 174.31535 * 20 18 16 40 40 H 1.07993 * 120.00459 * 0.02562 * 23 22 21 41 41 H 1.07997 * 119.95859 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.95814 * 179.69830 * 25 24 23 43 43 H 1.08002 * 120.03165 * 179.74779 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1467 2.8556 1.1888 9 1 5.6384 3.1484 2.0955 10 6 7.4935 2.5161 1.2261 11 7 8.0665 1.9836 0.1701 12 14 8.4900 2.8167 2.7773 13 1 7.6179 3.4209 3.8164 14 1 9.0319 1.5270 3.2753 15 1 9.6121 3.7408 2.4736 16 6 6.1370 2.8532 -1.1657 17 8 6.9495 3.7300 -1.3712 18 6 5.8811 1.8022 -2.2149 19 1 4.8165 1.7721 -2.4470 20 6 6.3272 0.4366 -1.6885 21 8 6.6175 2.1205 -3.3976 22 6 6.2169 3.2138 -4.0982 23 6 6.9061 3.5983 -5.2397 24 6 6.4985 4.7101 -5.9509 25 6 5.4075 5.4442 -5.5238 26 6 4.7139 5.0602 -4.3884 27 9 3.6448 5.7756 -3.9757 28 6 5.1193 3.9469 -3.6732 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9564 0.7807 -0.8891 33 1 3.9557 0.7810 0.8909 34 1 3.6101 3.2368 0.8893 35 1 3.6107 3.2356 -0.8906 36 1 8.9864 1.6799 0.2187 37 1 7.4085 0.4355 -1.5519 38 1 5.8401 0.2386 -0.7336 39 1 6.0505 -0.3370 -2.4048 40 1 7.7612 3.0284 -5.5719 41 1 7.0350 5.0086 -6.8394 42 1 5.0934 6.3159 -6.0786 43 1 4.5812 3.6494 -2.7854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871340080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:38 Heat of formation + Delta-G solvation = -152.384010 kcal Electronic energy + Delta-G solvation = -30979.544226 eV Core-core repulsion = 26520.273518 eV Total energy + Delta-G solvation = -4459.270708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.63709 -40.40166 -40.05754 -38.31676 -36.75560 -36.37577 -34.67431 -32.46618 -31.40953 -30.41261 -30.28212 -29.09753 -27.61144 -25.34506 -24.10605 -23.48804 -22.20818 -21.86240 -20.53251 -19.45448 -18.14651 -17.62254 -17.26291 -16.53966 -16.43734 -16.24301 -15.93765 -15.56040 -15.53885 -15.25697 -15.01985 -14.37817 -14.09670 -13.77988 -13.65772 -13.61427 -13.42117 -13.06646 -12.62052 -12.56341 -12.38554 -11.97734 -11.92542 -11.63863 -11.44615 -11.39049 -11.33209 -11.11293 -11.03625 -11.00463 -10.77302 -10.66752 -10.55969 -10.36117 -10.25954 -10.16172 -9.23901 -8.66688 -8.47379 -7.85351 -7.39572 -6.26784 -3.77794 1.42257 1.60386 2.38175 2.84138 3.20221 3.30771 3.33284 3.55326 3.76322 3.91244 4.19738 4.48914 4.71676 4.97830 5.04596 5.07724 5.11432 5.14009 5.19105 5.28233 5.36592 5.41160 5.45594 5.49427 5.56128 5.68845 5.72830 5.87337 5.97990 6.19191 6.25058 6.32359 6.37578 6.41944 6.45760 6.52615 6.53497 6.56750 6.98877 7.09698 7.44719 7.74760 7.89039 7.98533 8.88225 9.14044 9.44041 9.90596 10.85151 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007241 B = 0.005806 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3865.687328 B = 4821.603974 C = 7336.371666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.511 6.511 5 C -0.142 4.142 6 C 0.140 3.860 7 N -0.522 5.522 8 C -0.302 4.302 9 H 0.086 0.914 10 C 0.028 3.972 11 N -0.866 5.866 12 Si 0.927 3.073 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.531 3.469 17 O -0.498 6.498 18 C 0.068 3.932 19 H 0.062 0.938 20 C -0.122 4.122 21 O -0.284 6.284 22 C 0.188 3.812 23 C -0.169 4.169 24 C -0.056 4.056 25 C -0.207 4.207 26 C 0.138 3.862 27 F -0.141 7.141 28 C -0.237 4.237 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.269 0.731 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 -4.419 -7.102 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.399 6.399 5 C -0.182 4.182 6 C 0.014 3.986 7 N -0.250 5.250 8 C -0.429 4.429 9 H 0.104 0.896 10 C -0.176 4.176 11 N -0.506 5.506 12 Si 0.755 3.245 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.319 3.681 17 O -0.370 6.370 18 C 0.008 3.992 19 H 0.080 0.920 20 C -0.179 4.179 21 O -0.195 6.195 22 C 0.141 3.859 23 C -0.188 4.188 24 C -0.074 4.074 25 C -0.226 4.226 26 C 0.119 3.881 27 F -0.119 7.119 28 C -0.257 4.257 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.030 -3.741 -7.309 11.485 hybrid contribution -0.116 0.158 1.152 1.168 sum -8.146 -3.582 -6.157 10.821 Atomic orbital electron populations 1.23206 0.77114 1.03279 1.02375 1.86561 1.22932 1.34176 1.84321 1.24245 0.92487 0.81026 0.71647 1.90651 1.67409 1.36305 1.45530 1.22506 0.85673 1.03500 1.06518 1.21139 0.83515 0.91574 1.02369 1.42930 1.02125 1.74999 1.04975 1.19396 0.93117 1.44755 0.85620 0.89582 1.25081 0.97509 0.96829 0.98176 1.69439 1.13804 1.38738 1.28667 0.85864 0.79871 0.77787 0.80971 1.19817 1.21097 1.20985 1.19543 0.81847 0.84822 0.81910 1.90485 1.34952 1.34673 1.76884 1.22760 0.94181 0.98402 0.83873 0.92035 1.21679 1.05940 0.90359 0.99879 1.86157 1.56208 1.40756 1.36356 1.18697 0.90513 0.86343 0.90353 1.20432 1.02461 0.99975 0.95941 1.20678 0.94892 0.93183 0.98627 1.20883 0.99621 1.03620 0.98437 1.17378 0.85458 0.90879 0.94420 1.91481 1.53391 1.76961 1.90088 1.21168 1.01717 0.99128 1.03657 0.92103 0.88451 0.92078 0.87954 0.86501 0.90262 0.92481 0.91957 0.88883 0.89723 0.93563 0.84812 0.84780 0.85169 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.88 10.57 -39.27 -0.41 -5.29 16 3 C 0.46 7.11 7.96 36.00 0.29 7.39 16 4 O -0.51 -9.00 15.73 -18.75 -0.29 -9.29 16 5 C -0.14 -2.24 5.31 -27.89 -0.15 -2.39 16 6 C 0.14 2.65 4.48 -4.04 -0.02 2.64 16 7 N -0.52 -12.08 2.48 -114.82 -0.28 -12.36 16 8 C -0.30 -7.59 9.59 -14.94 -0.14 -7.74 16 9 H 0.09 2.08 7.83 -52.49 -0.41 1.67 16 10 C 0.03 0.73 5.09 -17.47 -0.09 0.64 16 11 N -0.87 -22.98 8.82 55.50 0.49 -22.49 16 12 Si 0.93 20.73 29.57 -169.99 -5.03 15.70 16 13 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.53 12.82 2.24 -10.99 -0.02 12.79 16 17 O -0.50 -14.19 14.77 -14.30 -0.21 -14.40 16 18 C 0.07 1.38 1.93 -27.88 -0.05 1.33 16 19 H 0.06 1.11 5.81 -51.92 -0.30 0.80 16 20 C -0.12 -2.26 8.26 37.16 0.31 -1.95 16 21 O -0.28 -5.89 9.63 -39.26 -0.38 -6.26 16 22 C 0.19 3.63 5.88 -39.23 -0.23 3.40 16 23 C -0.17 -2.73 9.99 -39.42 -0.39 -3.12 16 24 C -0.06 -0.76 10.04 -39.61 -0.40 -1.16 16 25 C -0.21 -3.04 10.02 -39.48 -0.40 -3.43 16 26 C 0.14 2.43 7.30 -39.44 -0.29 2.14 16 27 F -0.14 -2.49 17.27 2.25 0.04 -2.46 16 28 C -0.24 -4.57 8.07 -39.37 -0.32 -4.89 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.10 1.53 4.80 -51.93 -0.25 1.28 16 33 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.08 1.50 7.99 -51.93 -0.41 1.09 16 35 H 0.06 1.07 7.12 -51.93 -0.37 0.70 16 36 H 0.27 6.98 8.32 -40.82 -0.34 6.64 16 37 H 0.09 1.98 7.00 -51.93 -0.36 1.62 16 38 H 0.08 1.56 6.42 -51.93 -0.33 1.23 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 43 H 0.13 2.64 4.59 -52.49 -0.24 2.40 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -32.10 361.60 -6.67 -38.77 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.20 Total: 5.59 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.84 Total: 7.05 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.20 Total: -34.85 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.30 Total: -35.25 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.10 -6.67 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.615 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds