Wall clock time and date at job start Tue Mar 31 2020 22:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99987 * 2 1 4 4 O 1.20827 * 119.99986 * 0.02562 * 3 2 1 5 5 C 1.50691 * 119.99972 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47298 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47534 * 179.97438 * 6 5 3 8 8 C 1.37097 * 120.00447 * 270.00317 * 7 6 5 9 9 H 1.07997 * 119.99664 * 340.10201 * 8 7 6 10 10 C 1.38943 * 120.00453 * 160.09940 * 8 7 6 11 11 N 1.31420 * 120.00032 * 350.51988 * 10 8 7 12 12 Si 1.86799 * 120.00316 * 170.51836 * 10 8 7 13 13 H 1.48504 * 109.46876 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.47451 * 120.00179 * 12 10 8 15 15 H 1.48506 * 109.47309 * 240.00198 * 12 10 8 16 16 C 1.34777 * 119.99755 * 90.00126 * 7 6 5 17 17 O 1.21287 * 120.00413 * 127.51165 * 16 7 6 18 18 C 1.50699 * 120.00007 * 307.50443 * 16 7 6 19 19 H 1.09007 * 109.47203 * 54.73202 * 18 16 7 20 20 C 1.53003 * 109.47541 * 294.73049 * 18 16 7 21 21 O 1.42905 * 109.47370 * 174.72792 * 18 16 7 22 22 C 1.35893 * 116.99697 * 291.17301 * 21 18 16 23 23 C 1.38777 * 120.03693 * 178.52530 * 22 21 18 24 24 C 1.38136 * 119.99357 * 180.02562 * 23 22 21 25 25 C 1.38256 * 120.07948 * 0.27406 * 24 23 22 26 26 C 1.38485 * 120.08331 * 359.45357 * 25 24 23 27 27 F 1.35095 * 119.99727 * 180.27142 * 26 25 24 28 28 C 1.38388 * 120.00160 * 0.54417 * 26 25 24 29 29 H 1.09004 * 109.46818 * 60.00025 * 1 2 3 30 30 H 1.08999 * 109.47271 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47253 * 300.00376 * 1 2 3 32 32 H 1.09000 * 109.47370 * 60.00170 * 5 3 2 33 33 H 1.09007 * 109.47217 * 299.99861 * 5 3 2 34 34 H 1.08999 * 109.47175 * 60.00120 * 6 5 3 35 35 H 1.08995 * 109.47135 * 300.00461 * 6 5 3 36 36 H 0.96999 * 120.00071 * 185.00076 * 11 10 8 37 37 H 1.08990 * 109.47077 * 294.32295 * 20 18 16 38 38 H 1.09006 * 109.46457 * 54.32212 * 20 18 16 39 39 H 1.09003 * 109.47234 * 174.31535 * 20 18 16 40 40 H 1.07993 * 120.00459 * 0.02562 * 23 22 21 41 41 H 1.07997 * 119.95859 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.95814 * 179.69830 * 25 24 23 43 43 H 1.08002 * 120.03165 * 179.74779 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1467 2.8556 1.1888 9 1 5.6384 3.1484 2.0955 10 6 7.4935 2.5161 1.2261 11 7 8.0665 1.9836 0.1701 12 14 8.4900 2.8167 2.7773 13 1 7.6179 3.4209 3.8164 14 1 9.0319 1.5270 3.2753 15 1 9.6121 3.7408 2.4736 16 6 6.1370 2.8532 -1.1657 17 8 6.9495 3.7300 -1.3712 18 6 5.8811 1.8022 -2.2149 19 1 4.8165 1.7721 -2.4470 20 6 6.3272 0.4366 -1.6885 21 8 6.6175 2.1205 -3.3976 22 6 6.2169 3.2138 -4.0982 23 6 6.9061 3.5983 -5.2397 24 6 6.4985 4.7101 -5.9509 25 6 5.4075 5.4442 -5.5238 26 6 4.7139 5.0602 -4.3884 27 9 3.6448 5.7756 -3.9757 28 6 5.1193 3.9469 -3.6732 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9564 0.7807 -0.8891 33 1 3.9557 0.7810 0.8909 34 1 3.6101 3.2368 0.8893 35 1 3.6107 3.2356 -0.8906 36 1 8.9864 1.6799 0.2187 37 1 7.4085 0.4355 -1.5519 38 1 5.8401 0.2386 -0.7336 39 1 6.0505 -0.3370 -2.4048 40 1 7.7612 3.0284 -5.5719 41 1 7.0350 5.0086 -6.8394 42 1 5.0934 6.3159 -6.0786 43 1 4.5812 3.6494 -2.7854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871340080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:37 Heat of formation + Delta-G solvation = -170.270786 kcal Electronic energy + Delta-G solvation = -30980.319855 eV Core-core repulsion = 26520.273518 eV Total energy + Delta-G solvation = -4460.046337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.99556 -41.81290 -41.39197 -39.89332 -38.15580 -37.61899 -36.46821 -34.27145 -32.92880 -31.85484 -31.69961 -30.43530 -28.62260 -27.13906 -25.61825 -24.95816 -23.54282 -23.28844 -21.81014 -21.11002 -19.59148 -19.22221 -18.68080 -17.87898 -17.68167 -17.53119 -17.22304 -17.11790 -16.97181 -16.75263 -16.63916 -16.04125 -15.65990 -15.24077 -15.11008 -14.92325 -14.75718 -14.37714 -13.97268 -13.86467 -13.70682 -13.59084 -13.27434 -13.11009 -12.99705 -12.90628 -12.74956 -12.71699 -12.60334 -12.45147 -12.32461 -12.19951 -12.00269 -11.85239 -11.76130 -11.55829 -11.11223 -10.30871 -9.92511 -9.44979 -9.08369 -8.21019 -5.74031 0.13098 0.32386 1.14732 1.39988 1.47330 1.55519 1.71675 1.94494 2.14998 2.39300 2.62588 3.00419 3.21257 3.24103 3.67146 3.77182 3.82990 3.93289 4.00127 4.03010 4.05644 4.19957 4.31545 4.33707 4.35719 4.41689 4.44179 4.56450 4.73144 4.77095 4.92411 4.94233 4.98123 5.03754 5.07937 5.23368 5.32342 5.35804 5.45725 5.56306 5.75472 6.05162 6.31840 6.70718 6.96201 7.28788 7.59195 8.04118 8.89644 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007241 B = 0.005806 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3865.687328 B = 4821.603974 C = 7336.371666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.130 4.130 6 C 0.141 3.859 7 N -0.534 5.534 8 C -0.314 4.314 9 H 0.089 0.911 10 C -0.018 4.018 11 N -0.885 5.885 12 Si 0.983 3.017 13 H -0.264 1.264 14 H -0.273 1.273 15 H -0.302 1.302 16 C 0.531 3.469 17 O -0.555 6.555 18 C 0.076 3.924 19 H 0.082 0.918 20 C -0.113 4.113 21 O -0.300 6.300 22 C 0.156 3.844 23 C -0.173 4.173 24 C -0.039 4.039 25 C -0.194 4.194 26 C 0.115 3.885 27 F -0.148 7.148 28 C -0.259 4.259 29 H 0.061 0.939 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.264 0.736 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.152 0.848 41 H 0.185 0.815 42 H 0.165 0.835 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 -5.084 -8.433 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.170 4.170 6 C 0.017 3.983 7 N -0.262 5.262 8 C -0.441 4.441 9 H 0.107 0.893 10 C -0.219 4.219 11 N -0.526 5.526 12 Si 0.810 3.190 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.229 1.229 16 C 0.321 3.679 17 O -0.432 6.432 18 C 0.016 3.984 19 H 0.100 0.900 20 C -0.170 4.170 21 O -0.212 6.212 22 C 0.109 3.891 23 C -0.192 4.192 24 C -0.057 4.057 25 C -0.212 4.212 26 C 0.096 3.904 27 F -0.126 7.126 28 C -0.279 4.279 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.169 0.831 41 H 0.202 0.798 42 H 0.182 0.818 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.823 -4.447 -8.630 13.118 hybrid contribution 0.015 0.437 1.489 1.552 sum -8.809 -4.010 -7.140 12.027 Atomic orbital electron populations 1.23571 0.74838 1.05757 1.02523 1.86527 1.25044 1.32584 1.83670 1.23910 0.92086 0.81276 0.71044 1.90649 1.67881 1.37297 1.46933 1.22180 0.86540 1.00853 1.07387 1.21088 0.81241 0.93967 1.02040 1.43054 1.03605 1.75085 1.04457 1.19668 0.93640 1.44460 0.86359 0.89286 1.25816 0.98421 0.97000 1.00676 1.69562 1.13510 1.39544 1.29980 0.84998 0.77959 0.77600 0.78464 1.18760 1.19867 1.22934 1.20224 0.80623 0.84538 0.82478 1.90435 1.37563 1.36854 1.78304 1.22662 0.95395 0.97459 0.82930 0.90044 1.21622 1.03900 0.90561 1.00938 1.86113 1.56938 1.41758 1.36380 1.19100 0.91536 0.86712 0.91710 1.20870 1.02515 1.00804 0.94977 1.21248 0.93987 0.91251 0.99191 1.21351 0.98785 1.04167 0.96924 1.17690 0.86105 0.90913 0.95727 1.91455 1.53807 1.76984 1.90379 1.21132 1.02460 1.00540 1.03730 0.91997 0.84843 0.91983 0.86893 0.85854 0.90634 0.92810 0.92578 0.91794 0.89723 0.89847 0.83074 0.79816 0.81766 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -9.04 10.57 -51.47 -0.54 -9.59 16 3 C 0.47 14.11 7.96 71.23 0.57 14.68 16 4 O -0.54 -18.76 15.73 21.96 0.35 -18.42 16 5 C -0.13 -4.05 5.31 29.85 0.16 -3.89 16 6 C 0.14 5.48 4.48 86.38 0.39 5.87 16 7 N -0.53 -25.40 2.48 -635.57 -1.58 -26.98 16 8 C -0.31 -16.12 9.59 84.04 0.81 -15.32 16 9 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 10 C -0.02 -0.93 5.09 84.92 0.43 -0.49 16 11 N -0.89 -48.33 8.82 21.66 0.19 -48.14 16 12 Si 0.98 43.23 29.57 68.60 2.03 45.26 16 13 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 16 C 0.53 26.51 2.24 87.66 0.20 26.71 16 17 O -0.56 -33.06 14.77 15.93 0.24 -32.83 16 18 C 0.08 3.12 1.93 29.85 0.06 3.18 16 19 H 0.08 2.97 5.81 -2.38 -0.01 2.96 16 20 C -0.11 -4.21 8.26 71.98 0.59 -3.61 16 21 O -0.30 -12.69 9.63 -73.36 -0.71 -13.39 16 22 C 0.16 6.05 5.88 22.50 0.13 6.18 16 23 C -0.17 -5.30 9.99 22.37 0.22 -5.08 16 24 C -0.04 -0.94 10.04 22.25 0.22 -0.71 16 25 C -0.19 -5.17 10.02 22.33 0.22 -4.95 16 26 C 0.11 4.02 7.30 22.36 0.16 4.18 16 27 F -0.15 -5.27 17.27 44.97 0.78 -4.50 16 28 C -0.26 -10.25 8.07 22.41 0.18 -10.07 16 29 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.11 3.28 4.80 -2.39 -0.01 3.26 16 33 H 0.12 3.71 8.14 -2.38 -0.02 3.69 16 34 H 0.08 2.94 7.99 -2.39 -0.02 2.92 16 35 H 0.05 2.10 7.12 -2.39 -0.02 2.08 16 36 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 37 H 0.06 2.78 7.00 -2.39 -0.02 2.76 16 38 H 0.08 3.10 6.42 -2.38 -0.02 3.08 16 39 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.11 4.73 4.59 -2.91 -0.01 4.71 16 Total: -1.00 -73.07 361.60 7.35 -65.73 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 1.05 Total: 24.51 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 5.54 Total: 18.34 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -1.38 Total: -75.12 kcal Atomic # 8 Polarization: -73.56 SS G_CDS: -0.67 Total: -74.23 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.50 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -73.07 7.35 -65.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.544 kcal (2) G-P(sol) polarization free energy of solvation -73.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds